Rh6BG071800
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007548
Physical Location & Seq
Forward (+)
10849509 .. 10853000
3492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG071800.1

Sequence Viewer

Length: 225 bp
ATGTGTCAATTAACTGGTCTGTGGTACTTTGATGTTAGAGGCAACAACCTAACTGGCCTGATCCCCGACAACATTGGCAACTGTACAAGCTTTAAGATCCTGTCGCTACAAGGCAATAGACTGACTGGAAAGATTCCTGAGGTTATTGGTTTAATGCAGGCCCTTGCTGTTTTGGATTTAAGTGAGAATGAACTTCTTGGACCAAGTTGTTTGAATTGTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006833 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009798 GO:0009888 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0009987 GO:0010016 GO:0010087 GO:0010103 GO:0010148 GO:0010229 GO:0010286 GO:0010374 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0022603 GO:0023052 GO:0030155 GO:0032501 GO:0032502 GO:0033218 GO:0033554 GO:0033612 GO:0034605 GO:0036211 GO:0038023 GO:0040008 GO:0042044 GO:0042277 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048281 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065001 GO:0065007 GO:0070370 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:1905421 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

74

Amino Acids

8.04

Weight (kDa)

4.57

Isoelectric Point (pI)

28.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 9 - 65 9.8e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 55, 91
AfaI GTAC 2 cut(s) 26, 85
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
AlwI GGATC 2 cut(s) 55, 91
AoxI GGCC 2 cut(s) 55, 159
AspS9I GGNCC 2 cut(s) 160, 200
AvaII GGWCC 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 160, 200
Bse1I ACTGG 3 cut(s) 19, 58, 130
Bse21I CCTNAGG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 3 cut(s) 19, 58, 130
BshFI GGCC 2 cut(s) 57, 161
BsnI GGCC 2 cut(s) 57, 161
Bsp1407I TGTACA 1 cut(s) 83
Bsp143I GATC 2 cut(s) 60, 96
BspANI GGCC 2 cut(s) 57, 161
BspCNI CTCAG 1 cut(s) 130
BspPI GGATC 2 cut(s) 55, 91
BsrGI TGTACA 1 cut(s) 83
BsrI ACTGG 3 cut(s) 19, 58, 130
BssMI GATC 2 cut(s) 60, 96
Bst4CI ACNGT 1 cut(s) 83
BstAUI TGTACA 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 138
BstKTI GATC 2 cut(s) 63, 99
BstMBI GATC 2 cut(s) 60, 96
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 2 cut(s) 57, 161
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 160, 200
Csp6I GTAC 2 cut(s) 25, 84
CviJI RGCY 3 cut(s) 57, 90, 161
CviKI_1 RGCY 3 cut(s) 57, 90, 161
CviQI GTAC 2 cut(s) 25, 84
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 62, 98
DpnII GATC 2 cut(s) 60, 96
Eco47I GGWCC 1 cut(s) 200
Eco81I CCTNAGG 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 160
HaeIII GGCC 2 cut(s) 57, 161
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 138
Kzo9I GATC 2 cut(s) 60, 96
LpnPI CCDG 6 cut(s) 39, 71, 111, 113, 143, 150
MalI GATC 2 cut(s) 62, 98
MboI GATC 2 cut(s) 60, 96
MflI RGATCY 1 cut(s) 96
MluCI AATT 2 cut(s) 8, 214
MnlI CCTC 2 cut(s) 32, 133
MseI TTAA 4 cut(s) 11, 93, 152, 179
NdeII GATC 2 cut(s) 60, 96
PfeI GAWTC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 160, 200
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 2 cut(s) 26, 85
RsaNI GTAC 2 cut(s) 25, 84
SaqAI TTAA 4 cut(s) 11, 93, 152, 179
Sau3AI GATC 2 cut(s) 60, 96
Sau96I GGNCC 2 cut(s) 160, 200
SetI ASST 3 cut(s) 51, 92, 144
SinI GGWCC 1 cut(s) 200
Sse9I AATT 2 cut(s) 8, 214
TaaI ACNGT 1 cut(s) 83
TasI AATT 2 cut(s) 8, 214
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 4 cut(s) 11, 93, 152, 179
Tru9I TTAA 4 cut(s) 11, 93, 152, 179
TspDTI ATGAA 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.