Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Reverse (-)

68666404 .. 68667598

Gene Structure 1195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG512700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTGTCAATTAATTGGTCTATGGTACTTTGATGTTAGAGGCAATAACCTGACTGGCCCGATCCCCGACAACATTGGCAACTGTACAAGCTTTGAGATCCTGGACATATCATACAATCAGACCACTGGTGGGATTCCATATAACATTGGATTTTTACAAGTGGCTACCCTGTCACTACAAGGCAATAAACTGACTGGAAAGATTCCTGAGGTTATTGGTTTAATGCAAGCCCTTGCTGTTTTGGATTTAAGTGAGAATGAACTTGTAGGGCCAATTCCACCGATACTGGGCAATTTATCATGCACTAGGAAACTATACCTGCATGGTAACAAGTTGACTGGGACAATTCCTCCTAAGCTTGGCAATATGTCAAAGCTTAGCTATTTAAGTCTCTTTGCTTATTATCTCTGCGAGCAATTAAATGACAACAATCTGGTTGGTAGAATTCCTGGTGAGCTTGGGAAGTTGTATCAGTTGTTTGAATTGATTCTTGCCAACAATGATCTGGAAGGTCCCATCCCACATGACATCGGTTCCTGCACTGCCTTGAATCAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006833 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009798 GO:0009888 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0009987 GO:0010016 GO:0010087 GO:0010103 GO:0010148 GO:0010229 GO:0010286 GO:0010374 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0022603 GO:0023052 GO:0030155 GO:0032501 GO:0032502 GO:0033218 GO:0033554 GO:0033612 GO:0034605 GO:0036211 GO:0038023 GO:0040008 GO:0042044 GO:0042277 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048281 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065001 GO:0065007 GO:0070370 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:1905421 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

186

Amino Acids

20.27

Weight (kDa)

4.87

Isoelectric Point (pI)

28.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	54 - 112	8.9e-06	Leucine rich repeat
LRR_14	PF23598	57 - 164	1.6e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	327
AclWI	GGATC	2 cut(s)	55, 91
AcsI	RAATTY	1 cut(s)	444
AfaI	GTAC	2 cut(s)	26, 85
AfiI	CCNNNNNNNGG	3 cut(s)	129, 287, 359
AgsI	TTSAA	2 cut(s)	482, 550
AjnI	CCWGG	2 cut(s)	99, 448
AluBI	AGCT	5 cut(s)	90, 358, 376, 381, 457
AluI	AGCT	5 cut(s)	90, 358, 376, 381, 457
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	2 cut(s)	55, 91
AoxI	GGCC	2 cut(s)	55, 269
ApoI	RAATTY	1 cut(s)	444
AseI	ATTAAT	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	486
AspS9I	GGNCC	3 cut(s)	56, 269, 512
AsuHPI	GGTGA	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	512
AxyI	CCTNAGG	1 cut(s)	207
BccI	CCATC	1 cut(s)	524
BciT130I	CCWGG	2 cut(s)	101, 450
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	327
BlpI	GCTNAGC	1 cut(s)	377
Bme1390I	CCNGG	2 cut(s)	101, 450
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	3 cut(s)	56, 269, 512
BmiI	GGNNCC	2 cut(s)	514, 535
BmrFI	CCNGG	2 cut(s)	101, 450
BmrI	ACTGGG	2 cut(s)	296, 348
BmuI	ACTGGG	2 cut(s)	296, 348
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 287, 359
Bse1I	ACTGG	5 cut(s)	58, 130, 199, 291, 343
Bse21I	CCTNAGG	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	101, 450
BseGI	GGATG	1 cut(s)	516
BseLI	CCNNNNNNNGG	3 cut(s)	129, 287, 359
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	5 cut(s)	58, 130, 199, 291, 343
BsgI	GTGCAG	1 cut(s)	523
BshFI	GGCC	2 cut(s)	57, 271
BslFI	GGGAC	2 cut(s)	355, 498
BslI	CCNNNNNNNGG	3 cut(s)	129, 287, 359
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	355, 498
BsnI	GGCC	2 cut(s)	57, 271
Bsp1407I	TGTACA	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	60, 96, 502
Bsp1720I	GCTNAGC	1 cut(s)	377
BspANI	GGCC	2 cut(s)	57, 271
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	514, 535
BspMI	ACCTGC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	55, 91
BsrGI	TGTACA	1 cut(s)	83
BsrI	ACTGG	5 cut(s)	58, 130, 199, 291, 343
BssMI	GATC	3 cut(s)	60, 96, 502
Bst2UI	CCWGG	2 cut(s)	101, 450
Bst4CI	ACNGT	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	228, 413
BstDEI	CTNAG	3 cut(s)	207, 354, 377
BstF5I	GGATG	1 cut(s)	516
BstKTI	GATC	3 cut(s)	63, 99, 505
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	3 cut(s)	60, 96, 502
BstNI	CCWGG	2 cut(s)	101, 450
BstSCI	CCNGG	2 cut(s)	99, 448
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	57, 271
BtsCI	GGATG	1 cut(s)	516
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	123, 540
BveI	ACCTGC	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	228, 413
Cfr13I	GGNCC	3 cut(s)	56, 269, 512
Csp6I	GTAC	2 cut(s)	25, 84
CviAII	CATG	3 cut(s)	300, 323, 524
CviJI	RGCY	9 cut(s)	57, 90, 164, 230, 271, 358, 376, 381, 457
CviKI_1	RGCY	9 cut(s)	57, 90, 164, 230, 271, 358, 376, 381, 457
CviQI	GTAC	2 cut(s)	25, 84
DdeI	CTNAG	3 cut(s)	207, 354, 377
DpnI	GATC	3 cut(s)	62, 98, 504
DpnII	GATC	3 cut(s)	60, 96, 502
Eco47I	GGWCC	1 cut(s)	512
Eco81I	CCTNAGG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	2 cut(s)	99, 448
FaeI	CATG	3 cut(s)	303, 326, 527
FaqI	GGGAC	2 cut(s)	355, 498
FatI	CATG	3 cut(s)	299, 322, 523
FokI	GGATG	1 cut(s)	503
FspBI	CTAG	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	57, 271
Hin1II	CATG	3 cut(s)	303, 326, 527
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HindIII	AAGCTT	3 cut(s)	88, 356, 374
HinfI	GANTC	4 cut(s)	133, 202, 487, 550
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	2 cut(s)	206, 506
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	226, 303, 322, 540
HpyF3I	CTNAG	3 cut(s)	207, 354, 377
Hsp92II	CATG	3 cut(s)	303, 326, 527
Kzo9I	GATC	3 cut(s)	60, 96, 502
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	171, 326
MalI	GATC	3 cut(s)	62, 98, 504
MboI	GATC	3 cut(s)	60, 96, 502
MfeI	CAATTG	1 cut(s)	554
MflI	RGATCY	1 cut(s)	96
MluCI	AATT	9 cut(s)	8, 12, 273, 292, 345, 416, 444, 482, 554
MnlI	CCTC	3 cut(s)	32, 202, 360
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	5 cut(s)	11, 221, 248, 386, 419
MspR9I	CCNGG	2 cut(s)	101, 450
MunI	CAATTG	1 cut(s)	554
MvaI	CCWGG	2 cut(s)	101, 450
NdeII	GATC	3 cut(s)	60, 96, 502
NlaIII	CATG	3 cut(s)	303, 326, 527
NlaIV	GGNNCC	2 cut(s)	514, 535
NmuCI	GTSAC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	4 cut(s)	133, 202, 487, 550
PfoI	TCCNGGA	1 cut(s)	99
PpuMI	RGGWCCY	1 cut(s)	512
PshBI	ATTAAT	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	99, 448
PspGI	CCWGG	2 cut(s)	99, 448
PspN4I	GGNNCC	2 cut(s)	514, 535
PspPI	GGNCC	3 cut(s)	56, 269, 512
PspPPI	RGGWCCY	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	2 cut(s)	26, 85
RsaNI	GTAC	2 cut(s)	25, 84
SaqAI	TTAA	5 cut(s)	11, 221, 248, 386, 419
Sau3AI	GATC	3 cut(s)	60, 96, 502
Sau96I	GGNCC	3 cut(s)	56, 269, 512
ScrFI	CCNGG	2 cut(s)	101, 450
SetI	ASST	9 cut(s)	51, 92, 213, 321, 360, 378, 383, 459, 514
SinI	GGWCC	1 cut(s)	512
Sse9I	AATT	9 cut(s)	8, 12, 273, 292, 345, 416, 444, 482, 554
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	99, 448
TaaI	ACNGT	1 cut(s)	83
TasI	AATT	9 cut(s)	8, 12, 273, 292, 345, 416, 444, 482, 554
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	4 cut(s)	133, 202, 487, 550
Tru1I	TTAA	5 cut(s)	11, 221, 248, 386, 419
Tru9I	TTAA	5 cut(s)	11, 221, 248, 386, 419
TscAI	CASTG	2 cut(s)	130, 547
TseFI	GTSAC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	2 cut(s)	130, 547
VpaK11BI	GGWCC	1 cut(s)	512
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.