Rroxscaffold_1G00035930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007548
Physical Location & Seq
Forward (+)
52437056 .. 52438855
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035930.1

Sequence Viewer

Length: 543 bp
ATGGGTATTAGGCTCAAGAGAATGGTGGTCTCCGATGAGAGTCTTGAGTTGCTTTCCGTGTATGGCCAAGAAATTATGGCGGTGAAGGGGAAGGTCTTGCAAGTGTTCTTGAGAAAACCGGAGTTGAGCCATAAGTGGAGAGGATTAGTAAATACGAAAGTTCTGCTTTTCGCAAAGCCTCTGCCACTCGCCCTAATCTCATGCACACCTCACTTCTCTGTTCCCTCCGCCGTGACTTTGTTGGATGCCTTCACGCCCTCCACCCCGTCGCCGCTGCCTCAGCTCGCTCGTAGAACCGAAGCCTCTCCAATTCTCACCGGATTCGGTGTTCGTCACGGTGGTGACGTTGTCGGTGGTGTCCGTGGTGACTTCAATCAGTGGTTTGAAGCCGAAGAAGATGAATCAAAGAGAGTTTGTTATAAACTCATCCCCAAATTTCAGTTACGTGATTTGAAGGAAGAGAAAGAAGAGGGTGTATTGACCTTGGATTGTGTTACGATTATGGATATGAATCTTGTTTTGGTTTTGTGGTTTGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.17

Weight (kDa)

6.84

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AciI CCGC 3 cut(s) 80, 228, 272
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 1 cut(s) 434
AgsI TTSAA 3 cut(s) 373, 386, 454
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AleI CACNNNNGTG 1 cut(s) 339
AloI GAACNNNNNNTCC 2 cut(s) 312, 344
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 434
AsuHPI GGTGA 4 cut(s) 94, 307, 353, 377
BalI TGGCCA 1 cut(s) 66
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 261
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BcoDI GTCTC 1 cut(s) 34
BisI GCNGC 2 cut(s) 272, 275
BlsI GCNGC 2 cut(s) 273, 276
BmsI GCATC 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 65, 130
BsaAI YACGTR 1 cut(s) 446
BsaBI GATNNNNATC 1 cut(s) 510
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 361, 483
BsaWI WCCGGW 2 cut(s) 118, 317
Bse8I GATNNNNATC 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 361, 483
BseGI GGATG 2 cut(s) 250, 426
BseJI GATNNNNATC 1 cut(s) 510
BseMII CTCAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 261
BshFI GGCC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 119, 318
BsmAI GTCTC 1 cut(s) 34
BsnI GGCC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 34
BspACI CCGC 3 cut(s) 80, 228, 272
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 361, 483
BssT1I CCWWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 2 cut(s) 453, 462
BstBAI YACGTR 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 2 cut(s) 250, 426
BstMAI GTCTC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 2 cut(s) 250, 426
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 285
CviAII CATG 1 cut(s) 201
CviJI RGCY 7 cut(s) 13, 66, 129, 178, 283, 302, 389
CviKI_1 RGCY 7 cut(s) 13, 66, 129, 178, 283, 302, 389
DdeI CTNAG 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 453, 462
EarI CTCTTC 2 cut(s) 453, 462
EciI GGCGGA 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 1 cut(s) 204
FaiI YATR 7 cut(s) 63, 77, 132, 202, 420, 503, 509
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FatI CATG 1 cut(s) 200
Fnu4HI GCNGC 2 cut(s) 272, 275
FokI GGATG 2 cut(s) 257, 413
Fsp4HI GCNGC 2 cut(s) 272, 275
GluI GCNGC 2 cut(s) 272, 275
HaeIII GGCC 1 cut(s) 66
HapII CCGG 2 cut(s) 119, 318
Hin1II CATG 1 cut(s) 204
HinfI GANTC 4 cut(s) 40, 321, 401, 511
HpaII CCGG 2 cut(s) 119, 318
HphI GGTGA 4 cut(s) 94, 307, 353, 377
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 3 cut(s) 16, 44, 109
Hpy99I CGWCG 1 cut(s) 271
HpyAV CCTTC 4 cut(s) 79, 85, 259, 448
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 2 cut(s) 345, 445
HpyCH4V TGCA 3 cut(s) 100, 204, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 2 cut(s) 345, 445
Hsp92II CATG 1 cut(s) 204
LpnPI CCDG 2 cut(s) 132, 331
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 235
MaeII ACGT 2 cut(s) 345, 445
MaeIII GTNAC 6 cut(s) 232, 332, 341, 365, 441, 493
MboII GAAGA 4 cut(s) 404, 407, 470, 479
MlsI TGGCCA 1 cut(s) 66
MluCI AATT 3 cut(s) 72, 309, 434
MluNI TGGCCA 1 cut(s) 66
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 8 cut(s) 134, 189, 219, 235, 268, 288, 313, 463
Mox20I TGGCCA 1 cut(s) 66
MscI TGGCCA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 2 cut(s) 119, 318
MwoI GCNNNNNNNGC 1 cut(s) 280
NlaIII CATG 1 cut(s) 204
NmuCI GTSAC 4 cut(s) 232, 332, 341, 365
OliI CACNNNNGTG 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PfeI GAWTC 3 cut(s) 321, 401, 511
PflFI GACNNNGTC 1 cut(s) 347
PkrI GCNGC 2 cut(s) 273, 276
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 446
PsiI TTATAA 1 cut(s) 420
PsyI GACNNNGTC 1 cut(s) 347
RseI CAYNNNNRTG 1 cut(s) 339
SatI GCNGC 2 cut(s) 272, 275
SchI GAGTC 1 cut(s) 49
SetI ASST 6 cut(s) 96, 211, 285, 348, 448, 485
SfaNI GCATC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 3 cut(s) 14, 44, 109
SmoI CTYRAG 3 cut(s) 14, 44, 109
Sse9I AATT 3 cut(s) 72, 309, 434
SsiI CCGC 3 cut(s) 80, 228, 272
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 2 cut(s) 348, 448
TasI AATT 3 cut(s) 72, 309, 434
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 3 cut(s) 321, 401, 511
TscAI CASTG 1 cut(s) 383
TseFI GTSAC 4 cut(s) 232, 332, 341, 365
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 4 cut(s) 232, 332, 341, 365
TspDTI ATGAA 2 cut(s) 414, 524
TspGWI ACGGA 2 cut(s) 46, 350
TspRI CASTG 1 cut(s) 383
Tth111I GACNNNGTC 1 cut(s) 347
XapI RAATTY 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.