Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Forward (+)

35765800 .. 35783734

Gene Structure 17935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG207000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGTTGAGACGACTTTTTGTGAAGGGGAGGGTCTTGCAAGTTCCACCAGTGTTCAGGCATCGTTTGTAAGAGGTGTTCTTGAGAAAACTGGACTACGACCAGGTATTAATACTACTAGTGGATTGCAAGGCAACTCTTTGACTGGAGCACTGTCCCCTGATATGTGTCAATTAACTGGTCTATGGTACTTTGATGTTAGAGGCAATAACCTGACTGGCCCGATCCCCGACAACATTGGCAACTGTACAAGCTTTGAGATCCTGGACATATCATACAATCAAACCACTGGTGGGATTCCATATAACATTGGATTTTTACAAGTGGCTACCATGTCGCTACAAGGCAATAGACTGACTGGAAAGATTCCTGAGGTTATTGGTTTAATGCAAGCCCTTGCTGTTTTGGATTTAAGTGAGAATGAACTTGTAGGGCCAATTCCACCGATACTGGGCAATTTATCATACACTAGGAAACTATACCTGCATGGTAACAAGTTGACTGGGACAATTCCTCCTAAGCTTGGCAATATGTCAAAGCTTAGCTATTTTCTCTTTGCTTATTATCTCTGCGAGCAATTAAATGACAACAATCTGGTTGGTAGAATTCCTGGTGAGCTTGGGAAGTTGTATCAGTTGTTTGAATTGAATCTTGCCAACAATGATCTGCAAGGTCCCATCCCACATGACATCGGTTCCTGCACTGCCTTGAATCAATTGCTCACGCTTGAGGAGATCTTACAAAAATCAATCATCACCCAGCTGCCTTCTTTAGCGAGGGCTTTCACTTCATTAGTGCGAGGCTTTTTCACAAGTGATGTTACAAGTAGGATTCCATTGGATTTTCAATTCGTTCTTGACTTCTTGGATATGAGAATTGTTACAATAGGCTTTGTATGGAAAATGCTGTCAATCATCCAATTCTTCTTAACAAAGAACAACGGATTTCATATAGACACAGTAACGTACACAAGGCTAGTAAATGTCAGAGGGACGGTCTGGAAGAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0007275 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0035670 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

336

Amino Acids

37.04

Weight (kDa)

5.96

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	489
AclWI	GGATC	2 cut(s)	217, 253
AcsI	RAATTY	1 cut(s)	603
AfaI	GTAC	3 cut(s)	188, 247, 965
AfiI	CCNNNNNNNGG	3 cut(s)	291, 449, 521
AgsI	TTSAA	4 cut(s)	641, 646, 709, 845
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	3 cut(s)	100, 261, 607
AluBI	AGCT	6 cut(s)	252, 520, 538, 543, 616, 760
AluI	AGCT	6 cut(s)	252, 520, 538, 543, 616, 760
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	217, 253
AoxI	GGCC	2 cut(s)	217, 431
ApeKI	GCWGC	1 cut(s)	760
ApoI	RAATTY	1 cut(s)	603
AseI	ATTAAT	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	218, 431, 671
AsuHPI	GGTGA	2 cut(s)	623, 745
AvaII	GGWCC	1 cut(s)	671
AxyI	CCTNAGG	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	747
BccI	CCATC	1 cut(s)	683
BciT130I	CCWGG	3 cut(s)	102, 263, 609
BcoDI	GTCTC	1 cut(s)	2
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	3 cut(s)	117, 468, 974
BfuAI	ACCTGC	1 cut(s)	489
BglII	AGATCT	1 cut(s)	732
BisI	GCNGC	1 cut(s)	761
BlpI	GCTNAGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	762
Bme1390I	CCNGG	3 cut(s)	102, 263, 609
Bme18I	GGWCC	1 cut(s)	671
BmgT120I	GGNCC	3 cut(s)	218, 431, 671
BmiI	GGNNCC	2 cut(s)	673, 694
BmrFI	CCNGG	3 cut(s)	102, 263, 609
BmrI	ACTGGG	2 cut(s)	458, 510
BmsI	GCATC	1 cut(s)	68
BmuI	ACTGGG	2 cut(s)	458, 510
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	516
Bpu1102I	GCTNAGC	1 cut(s)	539
BpuEI	CTTGAG	2 cut(s)	101, 746
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 449, 521
Bse1I	ACTGG	9 cut(s)	48, 94, 148, 181, 220, 292, 361, 453, 505
Bse21I	CCTNAGG	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	102, 263, 609
BseGI	GGATG	2 cut(s)	675, 912
BseLI	CCNNNNNNNGG	3 cut(s)	291, 449, 521
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	9 cut(s)	48, 94, 148, 181, 220, 292, 361, 453, 505
BseRI	GAGGAG	1 cut(s)	743
BseXI	GCAGC	1 cut(s)	747
BseYI	CCCAGC	1 cut(s)	756
BsgI	GTGCAG	1 cut(s)	682
BshFI	GGCC	2 cut(s)	219, 433
BsiHKAI	GWGCWC	1 cut(s)	151
BslFI	GGGAC	4 cut(s)	139, 517, 657, 1003
BslI	CCNNNNNNNGG	3 cut(s)	291, 449, 521
BsmAI	GTCTC	1 cut(s)	2
BsmBI	CGTCTC	1 cut(s)	2
BsmFI	GGGAC	4 cut(s)	139, 517, 657, 1003
BsnI	GGCC	2 cut(s)	219, 433
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	4 cut(s)	222, 258, 661, 732
Bsp1720I	GCTNAGC	1 cut(s)	539
BspANI	GGCC	2 cut(s)	219, 433
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	673, 694
BspMI	ACCTGC	1 cut(s)	489
BspPI	GGATC	2 cut(s)	217, 253
BsrGI	TGTACA	1 cut(s)	245
BsrI	ACTGG	9 cut(s)	48, 94, 148, 181, 220, 292, 361, 453, 505
BssMI	GATC	4 cut(s)	222, 258, 661, 732
Bst2UI	CCWGG	3 cut(s)	102, 263, 609
Bst4CI	ACNGT	4 cut(s)	153, 245, 958, 994
Bst6I	CTCTTC	1 cut(s)	995
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	390, 572
BstDEI	CTNAG	3 cut(s)	369, 516, 539
BstF5I	GGATG	2 cut(s)	675, 912
BstKTI	GATC	4 cut(s)	225, 261, 664, 735
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	4 cut(s)	222, 258, 661, 732
BstNI	CCWGG	3 cut(s)	102, 263, 609
BstSCI	CCNGG	3 cut(s)	100, 261, 607
BstV1I	GCAGC	1 cut(s)	747
BstX2I	RGATCY	2 cut(s)	258, 732
BstYI	RGATCY	2 cut(s)	258, 732
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	219, 433
BtsCI	GGATG	2 cut(s)	675, 912
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	4 cut(s)	55, 149, 285, 699
BveI	ACCTGC	1 cut(s)	489
Cac8I	GCNNGC	2 cut(s)	390, 572
Cfr13I	GGNCC	3 cut(s)	218, 431, 671
CsiI	ACCWGGT	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	187, 246, 964
CviAII	CATG	3 cut(s)	331, 485, 683
CviQI	GTAC	3 cut(s)	187, 246, 964
DdeI	CTNAG	3 cut(s)	369, 516, 539
DpnI	GATC	4 cut(s)	224, 260, 663, 734
DpnII	GATC	4 cut(s)	222, 258, 661, 732
Eam1104I	CTCTTC	1 cut(s)	995
EarI	CTCTTC	1 cut(s)	995
Eco47I	GGWCC	1 cut(s)	671
Eco81I	CCTNAGG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	671
EcoRI	GAATTC	1 cut(s)	603
EcoRII	CCWGG	3 cut(s)	100, 261, 607
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	3 cut(s)	334, 488, 686
FaqI	GGGAC	4 cut(s)	139, 517, 657, 1003
FatI	CATG	3 cut(s)	330, 484, 682
Fnu4HI	GCNGC	1 cut(s)	761
FokI	GGATG	2 cut(s)	662, 899
Fsp4HI	GCNGC	1 cut(s)	761
FspBI	CTAG	3 cut(s)	117, 468, 974
GluI	GCNGC	1 cut(s)	761
GsaI	CCCAGC	1 cut(s)	760
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	219, 433
Hin1II	CATG	3 cut(s)	334, 488, 686
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HindIII	AAGCTT	3 cut(s)	250, 518, 536
HinfI	GANTC	5 cut(s)	295, 364, 646, 709, 829
HphI	GGTGA	2 cut(s)	623, 745
Hpy166II	GTNNAC	2 cut(s)	498, 966
Hpy188I	TCNGA	1 cut(s)	986
Hpy188III	TCNNGA	4 cut(s)	80, 368, 854, 997
Hpy8I	GTNNAC	2 cut(s)	498, 966
HpyAV	CCTTC	2 cut(s)	17, 774
HpyCH4III	ACNGT	4 cut(s)	153, 245, 958, 994
HpyCH4IV	ACGT	1 cut(s)	962
HpyCH4V	TGCA	6 cut(s)	38, 127, 388, 484, 667, 699
HpyF3I	CTNAG	3 cut(s)	369, 516, 539
HpySE526I	ACGT	1 cut(s)	962
Hsp92II	CATG	3 cut(s)	334, 488, 686
Kzo9I	GATC	4 cut(s)	222, 258, 661, 732
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	1 cut(s)	747
LweI	GCATC	1 cut(s)	68
MabI	ACCWGGT	1 cut(s)	100
MaeI	CTAG	3 cut(s)	117, 468, 974
MaeII	ACGT	1 cut(s)	962
MaeIII	GTNAC	4 cut(s)	488, 817, 877, 958
MalI	GATC	4 cut(s)	224, 260, 663, 734
MboI	GATC	4 cut(s)	222, 258, 661, 732
MboII	GAAGA	1 cut(s)	913
MfeI	CAATTG	1 cut(s)	713
MflI	RGATCY	2 cut(s)	258, 732
MhlI	GDGCHC	1 cut(s)	151
MseI	TTAA	7 cut(s)	108, 173, 383, 410, 578, 926, 1009
MspA1I	CMGCKG	1 cut(s)	760
MspR9I	CCNGG	3 cut(s)	102, 263, 609
MunI	CAATTG	1 cut(s)	713
MvaI	CCWGG	3 cut(s)	102, 263, 609
NdeII	GATC	4 cut(s)	222, 258, 661, 732
NlaIII	CATG	3 cut(s)	334, 488, 686
NlaIV	GGNNCC	2 cut(s)	673, 694
PfeI	GAWTC	5 cut(s)	295, 364, 646, 709, 829
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	762
PpuMI	RGGWCCY	1 cut(s)	671
PshBI	ATTAAT	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	671
Psp6I	CCWGG	3 cut(s)	100, 261, 607
PspFI	CCCAGC	1 cut(s)	756
PspGI	CCWGG	3 cut(s)	100, 261, 607
PspN4I	GGNNCC	2 cut(s)	673, 694
PspPI	GGNCC	3 cut(s)	218, 431, 671
PspPPI	RGGWCCY	1 cut(s)	671
PsrI	GAACNNNNNNTAC	2 cut(s)	60, 92
PsuI	RGATCY	2 cut(s)	258, 732
PvuII	CAGCTG	1 cut(s)	760
RsaI	GTAC	3 cut(s)	188, 247, 965
RsaNI	GTAC	3 cut(s)	187, 246, 964
SaqAI	TTAA	7 cut(s)	108, 173, 383, 410, 578, 926, 1009
SatI	GCNGC	1 cut(s)	761
Sau3AI	GATC	4 cut(s)	222, 258, 661, 732
Sau96I	GGNCC	3 cut(s)	218, 431, 671
ScrFI	CCNGG	3 cut(s)	102, 263, 609
SduI	GDGCHC	1 cut(s)	151
SexAI	ACCWGGT	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	671
SmlI	CTYRAG	2 cut(s)	80, 725
SmoI	CTYRAG	2 cut(s)	80, 725
SpeI	ACTAGT	1 cut(s)	116
SspMI	CTAG	3 cut(s)	117, 468, 974
StyD4I	CCNGG	3 cut(s)	100, 261, 607
TaaI	ACNGT	4 cut(s)	153, 245, 958, 994
TaiI	ACGT	1 cut(s)	965
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	5 cut(s)	295, 364, 646, 709, 829
Tru1I	TTAA	7 cut(s)	108, 173, 383, 410, 578, 926, 1009
Tru9I	TTAA	7 cut(s)	108, 173, 383, 410, 578, 926, 1009
TscAI	CASTG	4 cut(s)	55, 156, 292, 706
TseI	GCWGC	1 cut(s)	760
TspDTI	ATGAA	3 cut(s)	435, 777, 935
TspGWI	ACGGA	1 cut(s)	954
TspRI	CASTG	4 cut(s)	55, 156, 292, 706
VpaK11BI	GGWCC	1 cut(s)	671
VspI	ATTAAT	1 cut(s)	108
XapI	RAATTY	1 cut(s)	603
XspI	CTAG	3 cut(s)	117, 468, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.