Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Reverse (-)

75696171 .. 75698335

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG528400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTTTACGGTGCATTTTGTTAGGTCACTACAAGGCAATAAACTGACTGGAAAGATTCCTGAGGTTATTGGTTTAATGCAAGCCCTTGCTGTTTTGGATTTAAGTGAGAATGAACTTGTAGGGCCAATTCCACCGATACTGGGCAATTTATCATGCACTAGGAAACTATACCTGCATGGTAACAAGTTGACTGGGACAATTCCTCCTAAGCTTGGCAATATGTCAAAGCTTAGCTATTTTCTCTTTGCTTATTATCTCTGCGAGCAATTAAATGACAACAATCTGGTTGGTAGAATTCCTGGTGAGCTTGGGAAGTTGTATCAGTTGTTTGAATTGATTCTTGCCAACAATGATCTGGAAGGTCCCATCCCACATGACATCGGTTCCTGCACTGCCTTGAATCAATTTTGTGTACTGAGATTTCTGGCTGGGCCAGAAAAGCTGGCAAATTTTGGTAGTGTTGCAAGTATATTTCGTCTGTTGGGCCTTGTTTGTCTAGACAAACGATACATGTTAGCCATTTCCAGCAGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0007275 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0035670 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

178

Amino Acids

19.59

Weight (kDa)

8.27

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	294, 448
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	140, 212
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	2 cut(s)	332, 400
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	6 cut(s)	211, 229, 234, 307, 442, 531
AluI	AGCT	6 cut(s)	211, 229, 234, 307, 442, 531
AoxI	GGCC	3 cut(s)	122, 431, 484
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	2 cut(s)	294, 448
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	4 cut(s)	122, 362, 431, 484
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	362
AxyI	CCTNAGG	1 cut(s)	60
BccI	CCATC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	300
BfaI	CTAG	2 cut(s)	159, 497
BfuAI	ACCTGC	1 cut(s)	180
BisI	GCNGC	1 cut(s)	529
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	530
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	4 cut(s)	122, 362, 431, 484
BmiI	GGNNCC	2 cut(s)	364, 385
BmrFI	CCNGG	1 cut(s)	300
BmrI	ACTGGG	2 cut(s)	149, 201
BmuI	ACTGGG	2 cut(s)	149, 201
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 212
Bse1I	ACTGG	3 cut(s)	52, 144, 196
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	140, 212
BseMII	CTCAG	2 cut(s)	51, 407
BseNI	ACTGG	3 cut(s)	52, 144, 196
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	373
BshFI	GGCC	3 cut(s)	124, 433, 486
BslFI	GGGAC	2 cut(s)	208, 348
BslI	CCNNNNNNNGG	2 cut(s)	140, 212
BsmFI	GGGAC	2 cut(s)	208, 348
BsnI	GGCC	3 cut(s)	124, 433, 486
Bsp143I	GATC	1 cut(s)	352
Bsp1720I	GCTNAGC	1 cut(s)	230
BspANI	GGCC	3 cut(s)	124, 433, 486
BspCNI	CTCAG	2 cut(s)	52, 408
BspLI	GGNNCC	2 cut(s)	364, 385
BspMI	ACCTGC	1 cut(s)	180
BsrI	ACTGG	3 cut(s)	52, 144, 196
BssMI	GATC	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	10
BstC8I	GCNNGC	3 cut(s)	81, 263, 444
BstDEI	CTNAG	4 cut(s)	60, 207, 230, 416
BstF5I	GGATG	1 cut(s)	366
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	298
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	124, 433, 486
BtsCI	GGATG	1 cut(s)	366
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	180
Cac8I	GCNNGC	3 cut(s)	81, 263, 444
Cfr13I	GGNCC	4 cut(s)	122, 362, 431, 484
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	4 cut(s)	153, 176, 374, 511
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	4 cut(s)	60, 207, 230, 416
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	362
Eco81I	CCTNAGG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	4 cut(s)	156, 179, 377, 514
FaiI	YATR	7 cut(s)	154, 169, 177, 221, 375, 470, 512
FaqI	GGGAC	2 cut(s)	208, 348
FatI	CATG	4 cut(s)	152, 175, 373, 510
Fnu4HI	GCNGC	1 cut(s)	529
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	529
FspBI	CTAG	2 cut(s)	159, 497
GluI	GCNGC	1 cut(s)	529
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	124, 433, 486
Hin1II	CATG	4 cut(s)	156, 179, 377, 514
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	2 cut(s)	209, 227
HinfI	GANTC	3 cut(s)	55, 337, 400
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	6, 189, 413
Hpy188III	TCNNGA	3 cut(s)	59, 356, 497
Hpy8I	GTNNAC	3 cut(s)	6, 189, 413
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	6 cut(s)	13, 79, 156, 175, 390, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	4 cut(s)	60, 207, 230, 416
Hsp92II	CATG	4 cut(s)	156, 179, 377, 514
Kzo9I	GATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	159, 497
MaeIII	GTNAC	2 cut(s)	24, 179
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MluCI	AATT	8 cut(s)	126, 145, 198, 266, 294, 332, 404, 448
MnlI	CCTC	2 cut(s)	55, 213
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	4 cut(s)	74, 101, 269, 535
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	439
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	4 cut(s)	156, 179, 377, 514
NlaIV	GGNNCC	2 cut(s)	364, 385
NmuCI	GTSAC	1 cut(s)	24
NspI	RCATGY	1 cut(s)	514
PciI	ACATGT	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	55, 337, 400
PkrI	GCNGC	1 cut(s)	530
PpuMI	RGGWCCY	1 cut(s)	362
PscI	ACATGT	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	364, 385
PspPI	GGNCC	4 cut(s)	122, 362, 431, 484
PspPPI	RGGWCCY	1 cut(s)	362
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SaqAI	TTAA	4 cut(s)	74, 101, 269, 535
SatI	GCNGC	1 cut(s)	529
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	4 cut(s)	122, 362, 431, 484
ScrFI	CCNGG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	362
Sse9I	AATT	8 cut(s)	126, 145, 198, 266, 294, 332, 404, 448
SspMI	CTAG	2 cut(s)	159, 497
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	10
TasI	AATT	8 cut(s)	126, 145, 198, 266, 294, 332, 404, 448
TatI	WGTACW	1 cut(s)	412
TfiI	GAWTC	3 cut(s)	55, 337, 400
Tru1I	TTAA	4 cut(s)	74, 101, 269, 535
Tru9I	TTAA	4 cut(s)	74, 101, 269, 535
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	1 cut(s)	528
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	2 cut(s)	294, 448
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	2 cut(s)	159, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.