Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Reverse (-)

68557632 .. 68575252

Gene Structure 17621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG485600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAAAGTAGAAATTGCTCAGTACACCCAAGGCAATAACCTGACTGGCACGATCCCCGACAACATTGGCAACTGTACAAGCTTTGAGATCCTGGACATATCATACAATCAAACCACTGGTGGGATTCCATATAACATTGGATTTTTACAAGTGGCTACCCTGTCGCTACAAGGCAATAGACTGACTGGAAAGATTCCTGAGGTTATTGGTTTAATGCAAGCCCTTGCTGTTTTGGATTTAAGTGAGAATGAACTTGTAGGGCCAATTCCACCGATACTGGGCAATTTATCATACACTAGGAAACTATACCTGCATGGTAACAAGTTGACTGGGACAATTCCTCCTAAGCTTGGCAATATGTCAAAGCTTAGCTATTTTCTCTTTGCTTATTATCTCTGCGAGCAATTAAATGACAACAATCTGGTTGGTAGAATTCCTGGTGAGCTTGGGAAGTTGTATCAGTTGTTTGAATTGAATCTTGCCAACAATGATCTGCAAGGTCCCATCCCACATGACATCGGTTCCTGCACTACCTTGAATCAATTTCCCGGAGAACCATGCACAGTGTCACGCAGCACTCATTTGCTGACACCTGTCACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006833 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009798 GO:0009888 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0009987 GO:0010016 GO:0010087 GO:0010103 GO:0010148 GO:0010229 GO:0010286 GO:0010374 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0022603 GO:0023052 GO:0030155 GO:0032501 GO:0032502 GO:0033218 GO:0033554 GO:0033612 GO:0034605 GO:0036211 GO:0038023 GO:0040008 GO:0042044 GO:0042277 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048281 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065001 GO:0065007 GO:0070370 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:1905421 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

201

Amino Acids

21.88

Weight (kDa)

5.28

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	318
AclWI	GGATC	2 cut(s)	46, 82
AcsI	RAATTY	1 cut(s)	432
AfaI	GTAC	2 cut(s)	23, 76
AfiI	CCNNNNNNNGG	3 cut(s)	120, 278, 350
AgsI	TTSAA	3 cut(s)	470, 475, 538
AjnI	CCWGG	2 cut(s)	90, 436
AluBI	AGCT	5 cut(s)	81, 349, 367, 372, 445
AluI	AGCT	5 cut(s)	81, 349, 367, 372, 445
AlwI	GGATC	2 cut(s)	46, 82
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	573
ApoI	RAATTY	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	260, 500
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	585
BccI	CCATC	1 cut(s)	512
BciT130I	CCWGG	2 cut(s)	92, 438
BcnI	CCSGG	1 cut(s)	549
BfaI	CTAG	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	318
BisI	GCNGC	1 cut(s)	574
BlpI	GCTNAGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	575
Bme1390I	CCNGG	3 cut(s)	92, 438, 549
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	2 cut(s)	260, 500
BmiI	GGNNCC	2 cut(s)	502, 523
BmrFI	CCNGG	3 cut(s)	92, 438, 549
BmrI	ACTGGG	2 cut(s)	287, 339
BmuI	ACTGGG	2 cut(s)	287, 339
BoxI	GACNNNNGTC	1 cut(s)	593
Bpu10I	CCTNAGC	1 cut(s)	345
Bpu1102I	GCTNAGC	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 278, 350
Bse1I	ACTGG	5 cut(s)	49, 121, 190, 282, 334
Bse21I	CCTNAGG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	92, 438
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	120, 278, 350
BseMII	CTCAG	2 cut(s)	32, 189
BseNI	ACTGG	5 cut(s)	49, 121, 190, 282, 334
BseXI	GCAGC	1 cut(s)	585
BsgI	GTGCAG	1 cut(s)	511
BshFI	GGCC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	549
BslFI	GGGAC	2 cut(s)	346, 486
BslI	CCNNNNNNNGG	3 cut(s)	120, 278, 350
BsmFI	GGGAC	2 cut(s)	346, 486
BsnI	GGCC	1 cut(s)	262
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	51, 87, 490
Bsp1720I	GCTNAGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	2 cut(s)	31, 190
BspLI	GGNNCC	2 cut(s)	502, 523
BspMI	ACCTGC	1 cut(s)	318
BspPI	GGATC	2 cut(s)	46, 82
BsrGI	TGTACA	1 cut(s)	74
BsrI	ACTGG	5 cut(s)	49, 121, 190, 282, 334
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	3 cut(s)	51, 87, 490
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	2 cut(s)	92, 438
Bst4CI	ACNGT	2 cut(s)	74, 565
BstAUI	TGTACA	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	219, 401
BstDEI	CTNAG	4 cut(s)	18, 198, 345, 368
BstF5I	GGATG	1 cut(s)	504
BstKTI	GATC	3 cut(s)	54, 90, 493
BstMBI	GATC	3 cut(s)	51, 87, 490
BstNI	CCWGG	2 cut(s)	92, 438
BstPAI	GACNNNNGTC	1 cut(s)	593
BstSCI	CCNGG	3 cut(s)	90, 436, 547
BstV1I	GCAGC	1 cut(s)	585
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	504
BtsIMutI	CAGTG	2 cut(s)	114, 570
BveI	ACCTGC	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	219, 401
Cfr13I	GGNCC	2 cut(s)	260, 500
Csp6I	GTAC	2 cut(s)	22, 75
CviAII	CATG	4 cut(s)	314, 512, 558, 603
CviJI	RGCY	8 cut(s)	81, 155, 221, 262, 349, 367, 372, 445
CviKI_1	RGCY	8 cut(s)	81, 155, 221, 262, 349, 367, 372, 445
CviQI	GTAC	2 cut(s)	22, 75
DdeI	CTNAG	4 cut(s)	18, 198, 345, 368
DpnI	GATC	3 cut(s)	53, 89, 492
DpnII	GATC	3 cut(s)	51, 87, 490
Eco130I	CCWWGG	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	500
Eco81I	CCTNAGG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	90, 436
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	4 cut(s)	317, 515, 561, 606
FaqI	GGGAC	2 cut(s)	346, 486
FatI	CATG	4 cut(s)	313, 511, 557, 602
Fnu4HI	GCNGC	1 cut(s)	574
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	1 cut(s)	574
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	1 cut(s)	574
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	549
Hin1II	CATG	4 cut(s)	317, 515, 561, 606
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HindIII	AAGCTT	3 cut(s)	79, 347, 365
HinfI	GANTC	4 cut(s)	124, 193, 475, 538
HpaII	CCGG	1 cut(s)	549
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	2 cut(s)	24, 327
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	2 cut(s)	24, 327
HpyCH4III	ACNGT	2 cut(s)	74, 565
HpyCH4V	TGCA	5 cut(s)	217, 313, 496, 528, 561
HpyF3I	CTNAG	4 cut(s)	18, 198, 345, 368
Hsp92II	CATG	4 cut(s)	317, 515, 561, 606
Kzo9I	GATC	3 cut(s)	51, 87, 490
Lsp1109I	GCAGC	1 cut(s)	585
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	317, 567, 595
MalI	GATC	3 cut(s)	53, 89, 492
MboI	GATC	3 cut(s)	51, 87, 490
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	8 cut(s)	12, 264, 283, 336, 404, 432, 470, 542
MnlI	CCTC	2 cut(s)	193, 351
MseI	TTAA	3 cut(s)	212, 239, 407
MspI	CCGG	1 cut(s)	549
MspR9I	CCNGG	3 cut(s)	92, 438, 549
MvaI	CCWGG	2 cut(s)	92, 438
NciI	CCSGG	1 cut(s)	549
NdeII	GATC	3 cut(s)	51, 87, 490
NlaIII	CATG	4 cut(s)	317, 515, 561, 606
NlaIV	GGNNCC	2 cut(s)	502, 523
NmuCI	GTSAC	2 cut(s)	567, 595
PfeI	GAWTC	4 cut(s)	124, 193, 475, 538
PfoI	TCCNGGA	2 cut(s)	90, 547
PkrI	GCNGC	1 cut(s)	575
PpuMI	RGGWCCY	1 cut(s)	500
PshAI	GACNNNNGTC	1 cut(s)	593
Psp5II	RGGWCCY	1 cut(s)	500
Psp6I	CCWGG	2 cut(s)	90, 436
PspGI	CCWGG	2 cut(s)	90, 436
PspN4I	GGNNCC	2 cut(s)	502, 523
PspPI	GGNCC	2 cut(s)	260, 500
PspPPI	RGGWCCY	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	2 cut(s)	23, 76
RsaNI	GTAC	2 cut(s)	22, 75
SaqAI	TTAA	3 cut(s)	212, 239, 407
SatI	GCNGC	1 cut(s)	574
Sau3AI	GATC	3 cut(s)	51, 87, 490
Sau96I	GGNCC	2 cut(s)	260, 500
ScrFI	CCNGG	3 cut(s)	92, 438, 549
SinI	GGWCC	1 cut(s)	500
Sse9I	AATT	8 cut(s)	12, 264, 283, 336, 404, 432, 470, 542
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	3 cut(s)	90, 436, 547
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	74, 565
TasI	AATT	8 cut(s)	12, 264, 283, 336, 404, 432, 470, 542
TatI	WGTACW	2 cut(s)	21, 74
TfiI	GAWTC	4 cut(s)	124, 193, 475, 538
Tru1I	TTAA	3 cut(s)	212, 239, 407
Tru9I	TTAA	3 cut(s)	212, 239, 407
TscAI	CASTG	2 cut(s)	121, 570
TseFI	GTSAC	2 cut(s)	567, 595
TseI	GCWGC	1 cut(s)	573
Tsp45I	GTSAC	2 cut(s)	567, 595
TspDTI	ATGAA	2 cut(s)	17, 264
TspRI	CASTG	2 cut(s)	121, 570
VpaK11BI	GGWCC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	432
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.