Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000185.1

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Forward (+)

30180 .. 31849

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000185.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgggtaactgggatttgaattttgtggtttcagtatttgattcgaacattggagatgtggatttgggattgaaggaaaaaatgtcaaaattggggctaggaagaaattcaatgggtattaggctcaagagaatggtggtctccgatgagagccttgagttgctttccaggtatggccaagaaattatggcagtgaaggggaggggcttgcaagttccaccagtgttcaagcatcgtttgcctcatccaaatgaatgttctggaagtgatcttgatggagatatttactttgtttgctgggaccccgagttgatttctcgcaatcaaatccaacctatggattataccccagcaccaactataaagatggatcatgatgtcacaattgaggtattactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

133

Amino Acids

14.99

Weight (kDa)

5.09

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	337
AclWI	GGATC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	19, 106
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	4 cut(s)	19, 73, 111, 229
AjnI	CCWGG	1 cut(s)	167
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	378
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	2 cut(s)	19, 106
Asp700I	GAANNNNTTC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	301
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	177
BccI	CCATC	2 cut(s)	269, 361
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	2 cut(s)	302, 303
BmrFI	CCNGG	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	110, 176
BsaI	GGTCTC	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	14, 221
BseBI	CCWGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseNI	ACTGG	2 cut(s)	14, 221
BseYI	CCCAGC	2 cut(s)	297, 349
BshFI	GGCC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	268, 370
BspANI	GGCC	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	302, 303
BspPI	GGATC	1 cut(s)	378
BspT104I	TTCGAA	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	14, 221
BssMI	GATC	2 cut(s)	268, 370
Bst2UI	CCWGG	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	271, 373
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	2 cut(s)	268, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 228
Cac8I	GCNNGC	1 cut(s)	209
CciI	TCATGA	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	301
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	5 cut(s)	97, 124, 153, 177, 207
CviKI_1	RGCY	5 cut(s)	97, 124, 153, 177, 207
DpnI	GATC	2 cut(s)	270, 372
DpnII	GATC	2 cut(s)	268, 370
EaeI	YGGCCR	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	377
FaiI	YATR	6 cut(s)	174, 188, 338, 345, 362, 375
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	1 cut(s)	373
FokI	GGATG	1 cut(s)	231
FspBI	CTAG	1 cut(s)	98
GsaI	CCCAGC	2 cut(s)	301, 353
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	377
HinfI	GANTC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	4 cut(s)	127, 261, 272, 374
HpyAV	CCTTC	2 cut(s)	67, 190
HpyCH4V	TGCA	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
Hsp92II	CATG	1 cut(s)	377
KflI	GGGWCCC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	268, 370
LpnPI	CCDG	6 cut(s)	154, 181, 234, 246, 283, 363
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	5, 379
MalI	GATC	2 cut(s)	270, 372
MboI	GATC	2 cut(s)	268, 370
MboII	GAAGA	1 cut(s)	114
MfeI	CAATTG	1 cut(s)	384
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	5 cut(s)	19, 89, 106, 183, 384
MluNI	TGGCCA	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	3 cut(s)	195, 252, 382
Mox20I	TGGCCA	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	106
MscI	TGGCCA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeII	GATC	2 cut(s)	268, 370
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	2 cut(s)	302, 303
NmuCI	GTSAC	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	44
PagI	TCATGA	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	301
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	167
PspFI	CCCAGC	2 cut(s)	297, 349
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	302, 303
PspPI	GGNCC	1 cut(s)	301
PspPPI	RGGWCCY	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	268, 370
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	3 cut(s)	173, 337, 393
SfaNI	GCATC	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	125, 155
SmoI	CTYRAG	2 cut(s)	125, 155
Sse9I	AATT	5 cut(s)	19, 89, 106, 183, 384
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	167
TaqI	TCGA	1 cut(s)	44
TasI	AATT	5 cut(s)	19, 89, 106, 183, 384
TfiI	GAWTC	1 cut(s)	41
TscAI	CASTG	2 cut(s)	198, 228
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	2 cut(s)	198, 228
Van91I	CCANNNNNTGG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	2 cut(s)	19, 106
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.