Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006805.1

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Forward (+)

28643 .. 31103

Gene Structure 2461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006805.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggtggtctccgatgagagccttgagttgctttccaggtatggccaagaaattatggcagtgaaggggagggtcttgcaagttccaccagtgttcaggcatctggagaggattagtaaatacgaaagtgctggtgagcaacttgagctacgaccaggtattaatactactagtggattgcaaggcaactctttgactggagcactgtcccctgatatgtgtcaattaactggtctatggtactttgatgttagaggcaataacctgactggcccgatccccgacaacattggcaactgtacaagctttgagatcctggacatatcatacaatcaaaccactggtgggattccatataacattggatttttacaagtggctaccatgtcgctacaaggcaatagactgactggaaagattcctgaggttattggtttaatgcaagcccttgctgttttggatttaagtgagaatgaacttgtagggccaattccaccgatactgggcaatttatcatacactaggaaactatacctgcatggtaacaagttgactgggacaattcctcctaagcttggcaatatgtcaaagcttagctattttctctttgcttattatctctgcgagcaattaaatgacaacaatctggttggtagaattcctggtgagcttgggaagttgtatcagttgtttgaattgaatcttgccaacaatgatctgcaaggtcccatcccacatgacatcggttcctgcactgccttgaatcaattattctcatggcaaatttcagcaaagcaaatgaaagcaagtgcaaagctcacaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0007275 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0035670 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

275

Amino Acids

30.19

Weight (kDa)

5.95

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	543
AclWI	GGATC	2 cut(s)	271, 307
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	657, 783
AfaI	GTAC	2 cut(s)	242, 301
AfiI	CCNNNNNNNGG	3 cut(s)	345, 503, 575
AgsI	TTSAA	3 cut(s)	695, 700, 763
AhlI	ACTAGT	1 cut(s)	170
AjnI	CCWGG	4 cut(s)	35, 154, 315, 661
AluBI	AGCT	7 cut(s)	148, 306, 574, 592, 597, 670, 817
AluI	AGCT	7 cut(s)	148, 306, 574, 592, 597, 670, 817
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	271, 307
AoxI	GGCC	3 cut(s)	43, 271, 485
ApoI	RAATTY	2 cut(s)	657, 783
AseI	ATTAAT	1 cut(s)	162
AspS9I	GGNCC	3 cut(s)	272, 485, 725
AsuHPI	GGTGA	2 cut(s)	146, 677
AvaII	GGWCC	1 cut(s)	725
AxyI	CCTNAGG	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	205
BccI	CCATC	1 cut(s)	737
BciT130I	CCWGG	4 cut(s)	37, 156, 317, 663
BcoDI	GTCTC	1 cut(s)	13
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	2 cut(s)	171, 522
BfuAI	ACCTGC	1 cut(s)	543
BlpI	GCTNAGC	1 cut(s)	593
Bme1390I	CCNGG	4 cut(s)	37, 156, 317, 663
Bme18I	GGWCC	1 cut(s)	725
BmgT120I	GGNCC	3 cut(s)	272, 485, 725
BmiI	GGNNCC	2 cut(s)	727, 748
BmrFI	CCNGG	4 cut(s)	37, 156, 317, 663
BmrI	ACTGGG	2 cut(s)	512, 564
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	2 cut(s)	512, 564
BpmI	CTGGAG	2 cut(s)	125, 219
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	593
BpuEI	CTTGAG	2 cut(s)	44, 164
BsaI	GGTCTC	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bsc4I	CCNNNNNNNGG	3 cut(s)	345, 503, 575
Bse1I	ACTGG	8 cut(s)	89, 202, 235, 274, 346, 415, 507, 559
Bse21I	CCTNAGG	1 cut(s)	423
BseBI	CCWGG	4 cut(s)	37, 156, 317, 663
BseGI	GGATG	1 cut(s)	729
BseLI	CCNNNNNNNGG	3 cut(s)	345, 503, 575
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	8 cut(s)	89, 202, 235, 274, 346, 415, 507, 559
BsgI	GTGCAG	1 cut(s)	736
BshFI	GGCC	3 cut(s)	45, 273, 487
BsiHKAI	GWGCWC	1 cut(s)	205
BslFI	GGGAC	3 cut(s)	193, 571, 711
BslI	CCNNNNNNNGG	3 cut(s)	345, 503, 575
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	3 cut(s)	193, 571, 711
BsnI	GGCC	3 cut(s)	45, 273, 487
Bso31I	GGTCTC	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp1407I	TGTACA	1 cut(s)	299
Bsp143I	GATC	3 cut(s)	276, 312, 715
Bsp1720I	GCTNAGC	1 cut(s)	593
BspANI	GGCC	3 cut(s)	45, 273, 487
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	727, 748
BspMI	ACCTGC	1 cut(s)	543
BspPI	GGATC	2 cut(s)	271, 307
BspTNI	GGTCTC	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	299
BsrI	ACTGG	8 cut(s)	89, 202, 235, 274, 346, 415, 507, 559
BssMI	GATC	3 cut(s)	276, 312, 715
Bst2UI	CCWGG	4 cut(s)	37, 156, 317, 663
Bst4CI	ACNGT	2 cut(s)	207, 299
BstAUI	TGTACA	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	444, 626
BstDEI	CTNAG	3 cut(s)	423, 570, 593
BstF5I	GGATG	1 cut(s)	729
BstKTI	GATC	3 cut(s)	279, 315, 718
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	276, 312, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	4 cut(s)	37, 156, 317, 663
BstSCI	CCNGG	4 cut(s)	35, 154, 315, 661
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	3 cut(s)	45, 273, 487
BtsCI	GGATG	1 cut(s)	729
BtsI	GCAGTG	2 cut(s)	66, 753
BtsIMutI	CAGTG	5 cut(s)	66, 96, 203, 339, 753
BveI	ACCTGC	1 cut(s)	543
Cac8I	GCNNGC	2 cut(s)	444, 626
Cfr13I	GGNCC	3 cut(s)	272, 485, 725
CsiI	ACCWGGT	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	241, 300
CviAII	CATG	4 cut(s)	385, 539, 737, 777
CviQI	GTAC	2 cut(s)	241, 300
DdeI	CTNAG	3 cut(s)	423, 570, 593
DpnI	GATC	3 cut(s)	278, 314, 717
DpnII	GATC	3 cut(s)	276, 312, 715
EaeI	YGGCCR	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	725
Eco81I	CCTNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRI	GAATTC	1 cut(s)	657
EcoRII	CCWGG	4 cut(s)	35, 154, 315, 661
FaeI	CATG	4 cut(s)	388, 542, 740, 780
FaqI	GGGAC	3 cut(s)	193, 571, 711
FatI	CATG	4 cut(s)	384, 538, 736, 776
FokI	GGATG	1 cut(s)	716
FspBI	CTAG	2 cut(s)	171, 522
GsuI	CTGGAG	2 cut(s)	125, 219
HaeIII	GGCC	3 cut(s)	45, 273, 487
Hin1II	CATG	4 cut(s)	388, 542, 740, 780
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HindIII	AAGCTT	3 cut(s)	304, 572, 590
HinfI	GANTC	4 cut(s)	349, 418, 700, 763
HphI	GGTGA	2 cut(s)	146, 677
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	104, 422
Hpy8I	GTNNAC	1 cut(s)	552
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	207, 299
HpyCH4V	TGCA	7 cut(s)	79, 181, 442, 538, 721, 753, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	3 cut(s)	423, 570, 593
Hsp92II	CATG	4 cut(s)	388, 542, 740, 780
Kzo9I	GATC	3 cut(s)	276, 312, 715
LmnI	GCTCC	1 cut(s)	200
LweI	GCATC	1 cut(s)	109
MabI	ACCWGGT	1 cut(s)	154
MaeI	CTAG	2 cut(s)	171, 522
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	3 cut(s)	278, 314, 717
MboI	GATC	3 cut(s)	276, 312, 715
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	45
MnlI	CCTC	5 cut(s)	63, 102, 248, 418, 576
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	5 cut(s)	162, 227, 437, 464, 632
Msp20I	TGGCCA	1 cut(s)	45
MspR9I	CCNGG	4 cut(s)	37, 156, 317, 663
MvaI	CCWGG	4 cut(s)	37, 156, 317, 663
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	3 cut(s)	276, 312, 715
NlaIII	CATG	4 cut(s)	388, 542, 740, 780
NlaIV	GGNNCC	2 cut(s)	727, 748
PfeI	GAWTC	4 cut(s)	349, 418, 700, 763
PfoI	TCCNGGA	1 cut(s)	315
PpuMI	RGGWCCY	1 cut(s)	725
PshBI	ATTAAT	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	725
Psp6I	CCWGG	4 cut(s)	35, 154, 315, 661
PspGI	CCWGG	4 cut(s)	35, 154, 315, 661
PspN4I	GGNNCC	2 cut(s)	727, 748
PspPI	GGNCC	3 cut(s)	272, 485, 725
PspPPI	RGGWCCY	1 cut(s)	725
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	2 cut(s)	242, 301
RsaNI	GTAC	2 cut(s)	241, 300
SaqAI	TTAA	5 cut(s)	162, 227, 437, 464, 632
Sau3AI	GATC	3 cut(s)	276, 312, 715
Sau96I	GGNCC	3 cut(s)	272, 485, 725
ScrFI	CCNGG	4 cut(s)	37, 156, 317, 663
SduI	GDGCHC	1 cut(s)	205
SexAI	ACCWGGT	1 cut(s)	154
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	725
SmlI	CTYRAG	2 cut(s)	23, 143
SmoI	CTYRAG	2 cut(s)	23, 143
SpeI	ACTAGT	1 cut(s)	170
SspMI	CTAG	2 cut(s)	171, 522
StyD4I	CCNGG	4 cut(s)	35, 154, 315, 661
TaaI	ACNGT	2 cut(s)	207, 299
TatI	WGTACW	1 cut(s)	299
TfiI	GAWTC	4 cut(s)	349, 418, 700, 763
Tru1I	TTAA	5 cut(s)	162, 227, 437, 464, 632
Tru9I	TTAA	5 cut(s)	162, 227, 437, 464, 632
TscAI	CASTG	5 cut(s)	66, 96, 210, 346, 760
TspDTI	ATGAA	2 cut(s)	489, 815
TspRI	CASTG	5 cut(s)	66, 96, 210, 346, 760
VpaK11BI	GGWCC	1 cut(s)	725
VspI	ATTAAT	1 cut(s)	162
XapI	RAATTY	2 cut(s)	657, 783
XspI	CTAG	2 cut(s)	171, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.