RLG00000013116

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007548
Physical Location & Seq
Reverse (-)
26377303 .. 26378588
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013116

Sequence Viewer

Length: 354 bp
ATGGGTATTAGGCTCAAGAGAATGGTGGTCTCCGATGAGAGCCTTGAGTTGCTTTCCAGGTATGGCCAAGAAATTATGGCAGTGAAGGGGAGGGTCTTGCAAGTTCCACCAGTGATCAGGCATCGTGTTCTTGAGAAAACTGGAGTTGAGCCACAAGTGGAGAGGATTAGTAAATACGAAAGTGCTGGTGAGCAACTTGAGCTACGACCATGTCTGAAGAAAATTGTGTTGATTTTTCTTCCAGCAGCTGATATGTGGAGTCAACTACTGTCAGTCCATGGCCTCATCCAAATGAATGTTCTGGAAGTGATCTTGATGGAGATATTTACTTTGTTTGCTGGGACCCCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.26

Weight (kDa)

7.9

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 236
AjnI CCWGG 1 cut(s) 56
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 2 cut(s) 202, 248
AluI AGCT 2 cut(s) 202, 248
Alw26I GTCTC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 346
AoxI GGCC 2 cut(s) 64, 280
ApeKI GCWGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 346
AvaII GGWCC 1 cut(s) 342
BalI TGGCCA 1 cut(s) 66
BbvI GCAGC 1 cut(s) 257
BccI CCATC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 58
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 34
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 2 cut(s) 343, 344
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 162
BpuEI CTTGAG 3 cut(s) 65, 152, 218
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 110, 145
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 110, 145
BseXI GCAGC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 338
BshFI GGCC 2 cut(s) 66, 282
BsiHKCI CYCGRG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 34
BsnI GGCC 2 cut(s) 66, 282
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 346
Bsp143I GATC 2 cut(s) 114, 309
Bsp19I CCATGG 1 cut(s) 277
BspANI GGCC 2 cut(s) 66, 282
BspLI GGNNCC 2 cut(s) 343, 344
BspTNI GGTCTC 1 cut(s) 34
BsrI ACTGG 2 cut(s) 110, 145
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 2 cut(s) 114, 309
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 2 cut(s) 117, 312
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 114, 309
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 66, 282
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 87, 117
CaiI CAGNNNCTG 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 342
CviAII CATG 2 cut(s) 210, 278
CviJI RGCY 7 cut(s) 13, 42, 66, 151, 202, 248, 282
CviKI_1 RGCY 7 cut(s) 13, 42, 66, 151, 202, 248, 282
DpnI GATC 2 cut(s) 116, 311
DpnII GATC 2 cut(s) 114, 309
EaeI YGGCCR 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 346
EcoO109I RGGNCCY 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 2 cut(s) 213, 281
FaiI YATR 5 cut(s) 63, 77, 211, 254, 279
FatI CATG 2 cut(s) 209, 277
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 246
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 2 cut(s) 66, 282
Hin1II CATG 2 cut(s) 213, 281
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HinfI GANTC 1 cut(s) 259
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 2 cut(s) 34, 216
Hpy188III TCNNGA 4 cut(s) 16, 131, 302, 313
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
Hsp92II CATG 2 cut(s) 213, 281
KflI GGGWCCC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 2 cut(s) 114, 309
LpnPI CCDG 9 cut(s) 43, 70, 103, 123, 126, 171, 255, 287, 324
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 130
MalI GATC 2 cut(s) 116, 311
MboI GATC 2 cut(s) 114, 309
MboII GAAGA 2 cut(s) 229, 230
MlsI TGGCCA 1 cut(s) 66
MluCI AATT 2 cut(s) 72, 222
MluNI TGGCCA 1 cut(s) 66
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 3 cut(s) 84, 156, 293
Mox20I TGGCCA 1 cut(s) 66
MscI TGGCCA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 199
NcoI CCATGG 1 cut(s) 277
NdeII GATC 2 cut(s) 114, 309
NlaIII CATG 2 cut(s) 213, 281
NlaIV GGNNCC 2 cut(s) 343, 344
PflFI GACNNNGTC 1 cut(s) 210
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PpuMI RGGWCCY 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 343, 344
PspPI GGNCC 1 cut(s) 342
PspPPI RGGWCCY 1 cut(s) 342
PstNI CAGNNNCTG 1 cut(s) 248
PsyI GACNNNGTC 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 290
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 114, 309
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 58
SetI ASST 3 cut(s) 62, 204, 250
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 4 cut(s) 14, 44, 131, 197
SmoI CTYRAG 4 cut(s) 14, 44, 131, 197
Sse9I AATT 2 cut(s) 72, 222
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 270
TasI AATT 2 cut(s) 72, 222
TscAI CASTG 2 cut(s) 87, 117
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 308
TspRI CASTG 2 cut(s) 87, 117
Tth111I GACNNNGTC 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.