Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Reverse (-)

71492529 .. 71498945

Gene Structure 6417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG494800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAAACGGCGTCGTTTCCCACTCCAACGTTTGCTTGCCGAGATGAAAACAACCAAAGTTGGAAATTGGGTATTAATACTACTAGTGGATTGCAAGGCAACTCTTTGACTGGAGCACTGTCCCCTGATATGTGTCAATTAACTGGTCTATGGTACTTTGATGTTAGAGGCAATAACCTGACTGGCACGATCCCCGACAACATTGGCAACTGTACAAGCTTTGAGATCCTGGACATATCATACAATCAAACCACTGGTGGGATTCCATATAACATTGGATTTTTACAAGTGGCTACCCTGTCGCTACAAGGCAATAGACTGACTGGAAAGATTCCTGAGGTTATTGGTTTAATGCAAGCCCTTGCTGTTTTGGATTTAAGTGAGAATGAACTTGTAGGGCCAATTCCACCGATACTGGGCAATTTATCATACACTAGGAAACTATACCTGCATGGTAACAAGTTGACTGGGACAATTCCTCCTAAGCTTGGCAATATGTCAAAGCTTAGCTATTTTCTCTTTGCTTATTATCTCTGCGAGCAATTAAATGACAACAATCTGGTTGGTAGAATTCCTGGTGAGCTTGGGAAGTTGTATCAGTTGTTTGAATTGAATCTTGCCAACAATGATCTGCAAGGTCCCATCCCACATGACATCGGTTCCTGCACTACCTTGAATCAATTATTCTCATGGAAAATTTCAGCAAAGCAAATGAAAGCAAGTGCAAAGCTCACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0007275 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0035670 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

246

Amino Acids

26.9

Weight (kDa)

6.11

Isoelectric Point (pI)

25.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	456
AclI	AACGTT	1 cut(s)	29
AclWI	GGATC	2 cut(s)	184, 220
AcsI	RAATTY	2 cut(s)	570, 696
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	2 cut(s)	155, 214
AfiI	CCNNNNNNNGG	3 cut(s)	258, 416, 488
AgsI	TTSAA	3 cut(s)	608, 613, 676
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	228, 574
AluBI	AGCT	6 cut(s)	219, 487, 505, 510, 583, 730
AluI	AGCT	6 cut(s)	219, 487, 505, 510, 583, 730
Alw21I	GWGCWC	1 cut(s)	118
AlwI	GGATC	2 cut(s)	184, 220
AoxI	GGCC	1 cut(s)	398
ApoI	RAATTY	2 cut(s)	570, 696
AseI	ATTAAT	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	398, 638
AsuHPI	GGTGA	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	638
AxyI	CCTNAGG	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	1 cut(s)	650
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	230, 576
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	2 cut(s)	84, 435
BfuAI	ACCTGC	1 cut(s)	456
BlpI	GCTNAGC	1 cut(s)	506
Bme1390I	CCNGG	2 cut(s)	230, 576
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	398, 638
BmiI	GGNNCC	2 cut(s)	640, 661
BmrFI	CCNGG	2 cut(s)	230, 576
BmrI	ACTGGG	2 cut(s)	425, 477
BmuI	ACTGGG	2 cut(s)	425, 477
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	483
Bpu1102I	GCTNAGC	1 cut(s)	506
BsaHI	GRCGYC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 416, 488
Bse1I	ACTGG	7 cut(s)	115, 148, 187, 259, 328, 420, 472
Bse21I	CCTNAGG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	230, 576
BseGI	GGATG	1 cut(s)	642
BseLI	CCNNNNNNNGG	3 cut(s)	258, 416, 488
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	7 cut(s)	115, 148, 187, 259, 328, 420, 472
BsgI	GTGCAG	1 cut(s)	649
BshFI	GGCC	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	3 cut(s)	106, 484, 624
BslI	CCNNNNNNNGG	3 cut(s)	258, 416, 488
BsmFI	GGGAC	3 cut(s)	106, 484, 624
BsnI	GGCC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp1407I	TGTACA	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	189, 225, 628
Bsp1720I	GCTNAGC	1 cut(s)	506
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	640, 661
BspMI	ACCTGC	1 cut(s)	456
BspPI	GGATC	2 cut(s)	184, 220
BsrGI	TGTACA	1 cut(s)	212
BsrI	ACTGG	7 cut(s)	115, 148, 187, 259, 328, 420, 472
BssMI	GATC	3 cut(s)	189, 225, 628
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	230, 576
Bst4CI	ACNGT	2 cut(s)	120, 212
BstACI	GRCGYC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	212
BstC8I	GCNNGC	3 cut(s)	37, 357, 539
BstDEI	CTNAG	3 cut(s)	336, 483, 506
BstF5I	GGATG	1 cut(s)	642
BstKTI	GATC	3 cut(s)	192, 228, 631
BstMBI	GATC	3 cut(s)	189, 225, 628
BstNI	CCWGG	2 cut(s)	230, 576
BstSCI	CCNGG	2 cut(s)	228, 574
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	116, 252
BveI	ACCTGC	1 cut(s)	456
Cac8I	GCNNGC	3 cut(s)	37, 357, 539
Cfr13I	GGNCC	2 cut(s)	398, 638
Csp6I	GTAC	2 cut(s)	154, 213
CviAII	CATG	3 cut(s)	452, 650, 690
CviJI	RGCY	9 cut(s)	219, 293, 359, 400, 487, 505, 510, 583, 730
CviKI_1	RGCY	9 cut(s)	219, 293, 359, 400, 487, 505, 510, 583, 730
CviQI	GTAC	2 cut(s)	154, 213
DdeI	CTNAG	3 cut(s)	336, 483, 506
DpnI	GATC	3 cut(s)	191, 227, 630
DpnII	GATC	3 cut(s)	189, 225, 628
Eco47I	GGWCC	1 cut(s)	638
Eco81I	CCTNAGG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	228, 574
FaeI	CATG	3 cut(s)	455, 653, 693
FaqI	GGGAC	3 cut(s)	106, 484, 624
FatI	CATG	3 cut(s)	451, 649, 689
FokI	GGATG	1 cut(s)	629
FspBI	CTAG	2 cut(s)	84, 435
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	400
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	3 cut(s)	455, 653, 693
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HindIII	AAGCTT	3 cut(s)	217, 485, 503
HinfI	GANTC	4 cut(s)	262, 331, 613, 676
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	120, 212
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	6 cut(s)	94, 355, 451, 634, 666, 725
HpyF3I	CTNAG	3 cut(s)	336, 483, 506
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	455, 653, 693
Kzo9I	GATC	3 cut(s)	189, 225, 628
LmnI	GCTCC	1 cut(s)	113
MaeI	CTAG	2 cut(s)	84, 435
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	3 cut(s)	191, 227, 630
MboI	GATC	3 cut(s)	189, 225, 628
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	118
MmeI	TCCRAC	2 cut(s)	41, 50
MnlI	CCTC	3 cut(s)	161, 331, 489
MseI	TTAA	5 cut(s)	75, 140, 350, 377, 545
MspR9I	CCNGG	2 cut(s)	230, 576
MvaI	CCWGG	2 cut(s)	230, 576
NdeII	GATC	3 cut(s)	189, 225, 628
NlaIII	CATG	3 cut(s)	455, 653, 693
NlaIV	GGNNCC	2 cut(s)	640, 661
NmeAIII	GCCGAG	1 cut(s)	65
PfeI	GAWTC	4 cut(s)	262, 331, 613, 676
PfoI	TCCNGGA	1 cut(s)	228
PpuMI	RGGWCCY	1 cut(s)	638
PshBI	ATTAAT	1 cut(s)	75
Psp1406I	AACGTT	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	2 cut(s)	228, 574
PspGI	CCWGG	2 cut(s)	228, 574
PspN4I	GGNNCC	2 cut(s)	640, 661
PspPI	GGNCC	2 cut(s)	398, 638
PspPPI	RGGWCCY	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	2 cut(s)	155, 214
RsaNI	GTAC	2 cut(s)	154, 213
SaqAI	TTAA	5 cut(s)	75, 140, 350, 377, 545
Sau3AI	GATC	3 cut(s)	189, 225, 628
Sau96I	GGNCC	2 cut(s)	398, 638
ScrFI	CCNGG	2 cut(s)	230, 576
SduI	GDGCHC	1 cut(s)	118
SinI	GGWCC	1 cut(s)	638
SpeI	ACTAGT	1 cut(s)	83
SspMI	CTAG	2 cut(s)	84, 435
StyD4I	CCNGG	2 cut(s)	228, 574
TaaI	ACNGT	2 cut(s)	120, 212
TaiI	ACGT	1 cut(s)	32
TatI	WGTACW	1 cut(s)	212
TfiI	GAWTC	4 cut(s)	262, 331, 613, 676
Tru1I	TTAA	5 cut(s)	75, 140, 350, 377, 545
Tru9I	TTAA	5 cut(s)	75, 140, 350, 377, 545
TscAI	CASTG	2 cut(s)	123, 259
TspDTI	ATGAA	3 cut(s)	60, 402, 728
TspRI	CASTG	2 cut(s)	123, 259
VpaK11BI	GGWCC	1 cut(s)	638
VspI	ATTAAT	1 cut(s)	75
XapI	RAATTY	2 cut(s)	570, 696
XspI	CTAG	2 cut(s)	84, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.