Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Reverse (-)

14858418 .. 14873574

Gene Structure 15157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGTAAGCGGGATTTGAATTTTTTGGTTTCAGTATTGGATTCAAAAATTGGAGCTGTGGATTTAGGATTGAAGGCAAAAATGTCAAAATTGGGGCCAAGAAGTTCTCAACAAACGCGAGAAGTTGGTGAACTGCACAATAAGCTCACAAATTATGAGGATTTGGATTCAGATTACCCAAATCCAAATCAATATGAGATACCGGCCGACTCCTCTCTCGCTCTCGATTCTCCTCCGGTTCCTCACTTCTCGACGGGTAAACCAGAAGTTTTTGACACCAAAGCTCTTTTGTCTTGTCTTCACGAAATAATAAATTCTGGATCTCGGTTAATGGTAACGGCTGCTCAAGGGAGGGATGAGCAGCGGACAAGGAGGCCGGTTGCCCGATGGCGGTCGGGTTTTGGAACCTTGCGGCAGGTTTCATGTGATCCTCTCTGCTCATCCGGCGGCTCACGGCTCCGCGGGCTTCGGCCTTGTCGGAGGGTGGTGAGTGCGGCCGAACGGGTTGTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.87

Weight (kDa)

9.35

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	406
AccII	CGCG	2 cut(s)	118, 462
AciI	CCGC	8 cut(s)	10, 364, 391, 412, 447, 460, 462, 494
AclWI	GGATC	2 cut(s)	328, 422
AcoI	YGGCCR	2 cut(s)	204, 495
AcsI	RAATTY	2 cut(s)	19, 313
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	19, 45, 73
AluBI	AGCT	3 cut(s)	56, 145, 284
AluI	AGCT	3 cut(s)	56, 145, 284
AlwI	GGATC	2 cut(s)	328, 422
AoxI	GGCC	5 cut(s)	95, 204, 374, 470, 495
ApeKI	GCWGC	2 cut(s)	341, 361
ApoI	RAATTY	2 cut(s)	19, 313
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	140, 499
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	328, 373
BccI	CCATC	1 cut(s)	381
BceAI	ACGGC	2 cut(s)	354, 470
BfuAI	ACCTGC	1 cut(s)	406
BisI	GCNGC	5 cut(s)	342, 362, 413, 448, 495
BlsI	GCNGC	5 cut(s)	343, 363, 414, 449, 496
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	4 cut(s)	96, 240, 406, 458
BpiI	GAAGAC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	460
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse118I	RCCGGY	2 cut(s)	202, 376
BseDI	CCNNGG	1 cut(s)	460
BseGI	GGATG	2 cut(s)	361, 440
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseRI	GAGGAG	2 cut(s)	202, 222
BseX3I	CGGCCG	2 cut(s)	204, 495
BseXI	GCAGC	2 cut(s)	328, 373
BsgI	GTGCAG	1 cut(s)	119
Bsh1236I	CGCG	2 cut(s)	118, 462
Bsh1285I	CGRYCG	3 cut(s)	207, 395, 498
BshFI	GGCC	5 cut(s)	97, 206, 376, 472, 497
BsiEI	CGRYCG	3 cut(s)	207, 395, 498
BsiSI	CCGG	4 cut(s)	203, 236, 377, 444
BslI	CCNNNNNNNGG	1 cut(s)	390
BsnI	GGCC	5 cut(s)	97, 206, 376, 472, 497
Bsp143I	GATC	2 cut(s)	320, 427
BspACI	CCGC	8 cut(s)	10, 364, 391, 412, 447, 460, 462, 494
BspANI	GGCC	5 cut(s)	97, 206, 376, 472, 497
BspFNI	CGCG	2 cut(s)	118, 462
BspLI	GGNNCC	4 cut(s)	96, 240, 406, 458
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	2 cut(s)	328, 422
BsrFI	RCCGGY	2 cut(s)	202, 376
BssAI	RCCGGY	2 cut(s)	202, 376
BssECI	CCNNGG	1 cut(s)	460
BssMI	GATC	2 cut(s)	320, 427
BstC8I	GCNNGC	1 cut(s)	464
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	2 cut(s)	361, 440
BstFNI	CGCG	2 cut(s)	118, 462
BstKTI	GATC	2 cut(s)	323, 430
BstMBI	GATC	2 cut(s)	320, 427
BstMCI	CGRYCG	3 cut(s)	207, 395, 498
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 444, 463
BstUI	CGCG	2 cut(s)	118, 462
BstV1I	GCAGC	2 cut(s)	328, 373
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BstZI	CGGCCG	2 cut(s)	204, 495
BsuRI	GGCC	5 cut(s)	97, 206, 376, 472, 497
BtgI	CCRYGG	1 cut(s)	460
BtsCI	GGATG	2 cut(s)	361, 440
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	464
Cfr10I	RCCGGY	2 cut(s)	202, 376
Cfr13I	GGNCC	1 cut(s)	95
Cfr42I	CCGCGG	1 cut(s)	463
CviAII	CATG	1 cut(s)	423
DpnI	GATC	2 cut(s)	322, 429
DpnII	GATC	2 cut(s)	320, 427
EaeI	YGGCCR	2 cut(s)	204, 495
EagI	CGGCCG	2 cut(s)	204, 495
EclXI	CGGCCG	2 cut(s)	204, 495
Eco52I	CGGCCG	2 cut(s)	204, 495
FaeI	CATG	1 cut(s)	426
FaiI	YATR	3 cut(s)	156, 195, 424
FatI	CATG	1 cut(s)	422
FauI	CCCGC	2 cut(s)	3, 455
Fnu4HI	GCNGC	5 cut(s)	342, 362, 413, 448, 495
FokI	GGATG	2 cut(s)	368, 427
Fsp4HI	GCNGC	5 cut(s)	342, 362, 413, 448, 495
GluI	GCNGC	5 cut(s)	342, 362, 413, 448, 495
HaeIII	GGCC	5 cut(s)	97, 206, 376, 472, 497
HapII	CCGG	4 cut(s)	203, 236, 377, 444
Hin1II	CATG	1 cut(s)	426
HinfI	GANTC	4 cut(s)	41, 167, 209, 227
HpaII	CCGG	4 cut(s)	203, 236, 377, 444
HphI	GGTGA	2 cut(s)	140, 499
Hpy166II	GTNNAC	2 cut(s)	131, 260
Hpy188I	TCNGA	2 cut(s)	172, 480
Hpy188III	TCNNGA	4 cut(s)	224, 250, 302, 318
Hpy8I	GTNNAC	2 cut(s)	131, 260
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 444, 463
Hsp92II	CATG	1 cut(s)	426
KspI	CCGCGG	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	320, 427
LmnI	GCTCC	2 cut(s)	53, 462
LpnPI	CCDG	7 cut(s)	216, 249, 276, 303, 390, 401, 457
Lsp1109I	GCAGC	2 cut(s)	328, 373
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	2 cut(s)	322, 429
MboI	GATC	2 cut(s)	320, 427
MboII	GAAGA	1 cut(s)	290
MflI	RGATCY	1 cut(s)	320
MluCI	AATT	5 cut(s)	19, 48, 89, 151, 313
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	8 cut(s)	151, 223, 243, 252, 345, 366, 441, 474
MseI	TTAA	1 cut(s)	329
MspA1I	CMGCKG	2 cut(s)	364, 462
MspI	CCGG	4 cut(s)	203, 236, 377, 444
MvnI	CGCG	2 cut(s)	118, 462
MwoI	GCNNNNNNNGC	3 cut(s)	142, 444, 463
NdeII	GATC	2 cut(s)	320, 427
NlaIII	CATG	1 cut(s)	426
NlaIV	GGNNCC	4 cut(s)	96, 240, 406, 458
PfeI	GAWTC	3 cut(s)	41, 167, 227
PkrI	GCNGC	5 cut(s)	343, 363, 414, 449, 496
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PspN4I	GGNNCC	4 cut(s)	96, 240, 406, 458
PspPI	GGNCC	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	320
SacII	CCGCGG	1 cut(s)	463
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	5 cut(s)	342, 362, 413, 448, 495
Sau3AI	GATC	2 cut(s)	320, 427
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	203
SetI	ASST	5 cut(s)	58, 147, 286, 410, 420
Sfr303I	CCGCGG	1 cut(s)	463
SgrBI	CCGCGG	1 cut(s)	463
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	5 cut(s)	19, 48, 89, 151, 313
SsiI	CCGC	8 cut(s)	10, 364, 391, 412, 447, 460, 462, 494
TaqI	TCGA	2 cut(s)	225, 251
TasI	AATT	5 cut(s)	19, 48, 89, 151, 313
TauI	GCSGC	3 cut(s)	415, 450, 497
TfiI	GAWTC	3 cut(s)	41, 167, 227
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseI	GCWGC	2 cut(s)	341, 361
TspDTI	ATGAA	1 cut(s)	411
XapI	RAATTY	2 cut(s)	19, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.