Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006969

Physical Location & Seq

Genomic Coordinates Reverse (-)

30699454 .. 30700418

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008443

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGACAGCCCCTGAGCCTTTGCTAAGTGGAGCAGTGCGTTCCCGGGCAAAATGGGTTGAAGAGAAACAGATCCATGAGGTTAGTATGGATGTAGATGGAGTGGAAGGGATGGAGGGGAAACTGCCGAAGGCAAAACGGCGGAGCGTGAATCCCTTGCCCAAAGCGCGTGAAGATGGAGGGTTAATTATGGGAAGTGATTCTAGGGATGCTGCCCGGATTTCCCTCCCTATGATTTCGGAGACGGTTTTGCCGGAGGTTATGTCGGGAACAGTGGTTGGTATTAAAGCGGGAATAGAGAAGAATTTGAGTTTGGATACGCTTTCTCACGAAGAGTGCGGGCCGAGTGGTATTCAGAATGGGCCAACTGGGTCAGTTGCTAAGTCCAGAGAGAGGCTCAGAAGTGTAATAGTTGATTATAAACTCCTTAATAATGGGAGTGTGGGCAAGAGTACTTCTAGAAACATCCAGAAGGAGTTGATTAATGATAATCCAACTTCTAAAAAGAAAGGAAACAAGAAGGTGGTTGAGGTGCAGGATGTTGAACGTATAGTTGAATGTACGACTAGTAAGAAGGGTTTGGGACATGGATGGGGCTTTCCTGTGGGTGGTAGGAGCTACAGGAAGGGTGTGTCTATGTCTACTACGAAGAATGGCTGTTTTGTGGTGGGTAGTGTTGGTAAGGATGGTAAGAGTGGTGGTTTGGCTTGGGTTGGAAAGAAGATGTTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

26.03

Weight (kDa)

9.73

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006969)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008443
rosa_multiflora	Rmu_sc0000433.1_g000030
rosa_roxburghii	Rroxscaffold_3G00229450
rosa_samantha	Rh1BG120000 Rh2BG060500 Rh2CG062500 Rh2DG239300 Rh2DG288100 Rh3AG176700 Rh3BG202600 Rh3BG314100 Rh3CG192900 Rh3CG200100 Rh3DG172600 Rh5AG508800 Rh5BG530000 Rh5BG530100 Rh5CG554400 Rh5CG554500 Rh6AG027300 Rh6BG023200 Rh6BG023400 Rh6BG169600 Rh7DG276100
rosa_wichuraiana	Rw5G046860 Rw6G002310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	638
AccII	CGCG	1 cut(s)	166
AciI	CCGC	3 cut(s)	139, 287, 336
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	2 cut(s)	451, 559
AfiI	CCNNNNNNNGG	2 cut(s)	390, 605
AgsI	TTSAA	3 cut(s)	59, 542, 554
AhlI	ACTAGT	1 cut(s)	563
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	1 cut(s)	615
AluI	AGCT	1 cut(s)	615
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	2 cut(s)	338, 359
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	301
AseI	ATTAAT	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	2 cut(s)	338, 359
AsuC2I	CCSGG	3 cut(s)	43, 44, 214
AvaI	CYCGRG	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	5 cut(s)	89, 103, 167, 582, 677
BceAI	ACGGC	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	307
BcnI	CCSGG	3 cut(s)	43, 44, 214
BcoDI	GTCTC	1 cut(s)	233
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	3 cut(s)	201, 456, 564
BfmI	CTRYAG	1 cut(s)	616
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	43, 44, 214
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	338, 359
BmrFI	CCNGG	3 cut(s)	43, 44, 214
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	378, 410
Bpu10I	CCTNAGC	1 cut(s)	12
BpuMI	CCSGG	3 cut(s)	43, 44, 214
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 605
Bse1I	ACTGG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	7 cut(s)	94, 114, 211, 462, 541, 593, 688
BseLI	CCNNNNNNNGG	2 cut(s)	390, 605
BseMII	CTCAG	1 cut(s)	409
BseNI	ACTGG	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	340, 361
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	43, 214, 251
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	2 cut(s)	390, 605
BsmAI	GTCTC	1 cut(s)	233
BsmBI	CGTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	594
BsnI	GGCC	2 cut(s)	340, 361
BsoBI	CYCGRG	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	3 cut(s)	139, 287, 336
BspANI	GGCC	2 cut(s)	340, 361
BspCNI	CTCAG	2 cut(s)	4, 408
BspFNI	CGCG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	244, 271
Bst6I	CTCTTC	2 cut(s)	54, 324
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	4 cut(s)	12, 23, 378, 395
BstF5I	GGATG	7 cut(s)	94, 114, 211, 462, 541, 593, 688
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstSCI	CCNGG	3 cut(s)	41, 42, 212
BstSFI	CTRYAG	1 cut(s)	616
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	340, 361
BtsCI	GGATG	7 cut(s)	94, 114, 211, 462, 541, 593, 688
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 276
Cac8I	GCNNGC	1 cut(s)	338
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	338, 359
Cfr9I	CCCGGG	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	450, 558
CviAII	CATG	2 cut(s)	74, 584
CviJI	RGCY	9 cut(s)	8, 16, 340, 361, 394, 594, 615, 654, 704
CviKI_1	RGCY	9 cut(s)	8, 16, 340, 361, 394, 594, 615, 654, 704
CviQI	GTAC	2 cut(s)	450, 558
DdeI	CTNAG	4 cut(s)	12, 23, 378, 395
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	54, 324
EarI	CTCTTC	2 cut(s)	54, 324
EciI	GGCGGA	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	2 cut(s)	77, 587
FaiI	YATR	9 cut(s)	75, 86, 188, 230, 260, 417, 548, 585, 635
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	2 cut(s)	73, 583
FauI	CCCGC	2 cut(s)	280, 329
FblI	GTMKAC	1 cut(s)	638
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	7 cut(s)	101, 121, 218, 449, 548, 600, 695
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	3 cut(s)	201, 456, 564
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	340, 361
HapII	CCGG	3 cut(s)	43, 214, 251
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	77, 587
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	2 cut(s)	148, 197
HpaII	CCGG	3 cut(s)	43, 214, 251
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	3 cut(s)	238, 354, 398
Hpy188III	TCNNGA	5 cut(s)	264, 326, 384, 456, 466
Hpy8I	GTNNAC	1 cut(s)	639
HpyAV	CCTTC	6 cut(s)	98, 121, 463, 511, 565, 616
HpyCH4III	ACNGT	2 cut(s)	244, 271
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	4 cut(s)	12, 23, 378, 395
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	2 cut(s)	77, 587
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	3 cut(s)	29, 141, 612
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	201, 456, 564
MaeII	ACGT	1 cut(s)	544
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	6 cut(s)	71, 182, 310, 341, 658, 730
MflI	RGATCY	1 cut(s)	69
MluCI	AATT	2 cut(s)	183, 301
MmeI	TCCRAC	2 cut(s)	515, 691
MnlI	CCTC	7 cut(s)	70, 106, 170, 233, 247, 384, 520
MroXI	GAANNNNTTC	1 cut(s)	196
MseI	TTAA	4 cut(s)	182, 282, 426, 480
MspI	CCGG	3 cut(s)	43, 214, 251
MspR9I	CCNGG	3 cut(s)	43, 44, 214
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	163
NciI	CCSGG	3 cut(s)	43, 44, 214
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	77, 587
NmeAIII	GCCGAG	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	148, 197
PkrI	GCNGC	1 cut(s)	211
PshBI	ATTAAT	1 cut(s)	480
PsiI	TTATAA	1 cut(s)	417
PspPI	GGNCC	2 cut(s)	338, 359
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	2 cut(s)	451, 559
RsaNI	GTAC	2 cut(s)	450, 558
SaqAI	TTAA	4 cut(s)	182, 282, 426, 480
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	2 cut(s)	338, 359
ScaI	AGTACT	1 cut(s)	451
ScrFI	CCNGG	3 cut(s)	43, 44, 214
SetI	ASST	6 cut(s)	81, 258, 522, 531, 547, 617
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	616
SmaI	CCCGGG	1 cut(s)	44
SpeI	ACTAGT	1 cut(s)	563
Sse9I	AATT	2 cut(s)	183, 301
SsiI	CCGC	3 cut(s)	139, 287, 336
SspMI	CTAG	3 cut(s)	201, 456, 564
StyD4I	CCNGG	3 cut(s)	41, 42, 212
TaaI	ACNGT	2 cut(s)	244, 271
TaiI	ACGT	1 cut(s)	547
TasI	AATT	2 cut(s)	183, 301
TatI	WGTACW	1 cut(s)	449
TfiI	GAWTC	2 cut(s)	148, 197
Tru1I	TTAA	4 cut(s)	182, 282, 426, 480
Tru9I	TTAA	4 cut(s)	182, 282, 426, 480
TscAI	CASTG	2 cut(s)	39, 276
TseI	GCWGC	1 cut(s)	209
TspMI	CCCGGG	1 cut(s)	42
TspRI	CASTG	2 cut(s)	39, 276
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	1 cut(s)	301
XbaI	TCTAGA	1 cut(s)	455
XmaI	CCCGGG	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	196
XspI	CTAG	3 cut(s)	201, 456, 564
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.