Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006969

Physical Location & Seq

Genomic Coordinates Forward (+)

18053853 .. 18055842

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG202600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGACAGCTCCTGAGCCTATGTTGAGTGGAGCAGTGCGTTCCCGGGCAGAATGGGTTGAAGAGAATCCGATCCAGGAGGTTAGAATGGATGTAGATGGAGTTGAAGAGATGGTGGAGAAACAGCCGGAGGCAAAACGGCGGCGCGTGATTCCCTTAGCCAAAGCGCGTGAAGATGGAGTGTTAATTATGGGGAGTGATTCTAGGGATGCTGCTCTGATTTCTCTCCCTTTGATTTCGGAGACGGTTTTGCCGGAGTTTATGTCTGGACCAATGGTTGGTATTAAAGCGGGAATAGAGAGGAATTTGGGTTTGGATACGGAGCATATTGGGAATGTGCCGAGGAGAATTAACAAATTAAGGAAGGAGTTAGATGGTATTCCATTTGATCATCCTGTGGATTCGGTTCAGGAGCATAGAAAGAAGGTTAAAAAAGATCTAGAGAAACGCTATACCCACTGTTGTATCGAACCAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.96

Weight (kDa)

5.51

Isoelectric Point (pI)

59.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006969)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008443
rosa_multiflora	Rmu_sc0000433.1_g000030
rosa_roxburghii	Rroxscaffold_3G00229450
rosa_samantha	Rh1BG120000 Rh2BG060500 Rh2CG062500 Rh2DG239300 Rh2DG288100 Rh3AG176700 Rh3BG202600 Rh3BG314100 Rh3CG192900 Rh3CG200100 Rh3DG172600 Rh5AG508800 Rh5BG530000 Rh5BG530100 Rh5CG554400 Rh5CG554500 Rh6AG027300 Rh6BG023200 Rh6BG023400 Rh6BG169600 Rh7DG276100
rosa_wichuraiana	Rw5G046860 Rw6G002310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccII	CGCG	2 cut(s)	144, 166
AciI	CCGC	2 cut(s)	139, 287
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	59, 104
AjnI	CCWGG	1 cut(s)	72
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	301
AspLEI	GCGC	2 cut(s)	144, 166
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	2 cut(s)	43, 44
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	266
BaeI	ACNNNNGTAYC	2 cut(s)	445, 478
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	4 cut(s)	89, 103, 167, 365
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	74
BciVI	GTATCC	1 cut(s)	307
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	2 cut(s)	43, 44
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	201, 437
BfuI	GTATCC	1 cut(s)	307
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	2 cut(s)	140, 210
BlsI	GCNGC	2 cut(s)	141, 211
Bme1390I	CCNGG	3 cut(s)	43, 44, 74
Bme18I	GGWCC	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	3 cut(s)	43, 44, 74
BmsI	GCATC	1 cut(s)	196
Bpu10I	CCTNAGC	2 cut(s)	12, 154
BpuMI	CCSGG	2 cut(s)	43, 44
BsaJI	CCNNGG	2 cut(s)	42, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	42, 338
BseGI	GGATG	3 cut(s)	94, 211, 388
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	196
Bsh1236I	CGCG	2 cut(s)	144, 166
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	43, 125, 251
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	233
BsmBI	CGTCTC	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	69, 385, 433
BspACI	CCGC	2 cut(s)	139, 287
BspCNI	CTCAG	1 cut(s)	4
BspFNI	CGCG	2 cut(s)	144, 166
BspPI	GGATC	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	42, 338
BssMI	GATC	3 cut(s)	69, 385, 433
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	244, 458
Bst6I	CTCTTC	2 cut(s)	54, 99
BstDEI	CTNAG	2 cut(s)	12, 154
BstF5I	GGATG	3 cut(s)	94, 211, 388
BstFNI	CGCG	2 cut(s)	144, 166
BstHHI	GCGC	2 cut(s)	144, 166
BstKTI	GATC	3 cut(s)	72, 388, 436
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	69, 385, 433
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	3 cut(s)	41, 42, 72
BstUI	CGCG	2 cut(s)	144, 166
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	307
BtsCI	GGATG	3 cut(s)	94, 211, 388
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 454
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	2 cut(s)	144, 166
Cfr13I	GGNCC	1 cut(s)	266
Cfr9I	CCCGGG	1 cut(s)	42
CviJI	RGCY	4 cut(s)	8, 16, 124, 158
CviKI_1	RGCY	4 cut(s)	8, 16, 124, 158
DdeI	CTNAG	2 cut(s)	12, 154
DpnI	GATC	3 cut(s)	71, 387, 435
DpnII	GATC	3 cut(s)	69, 385, 433
Eam1104I	CTCTTC	2 cut(s)	54, 99
EarI	CTCTTC	2 cut(s)	54, 99
Eco47I	GGWCC	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	233
FaiI	YATR	6 cut(s)	20, 188, 260, 324, 414, 450
FauI	CCCGC	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	140, 210
FokI	GGATG	3 cut(s)	101, 218, 375
Fsp4HI	GCNGC	2 cut(s)	140, 210
FspBI	CTAG	2 cut(s)	201, 437
GlaI	GCGC	2 cut(s)	143, 165
GluI	GCNGC	2 cut(s)	140, 210
HapII	CCGG	3 cut(s)	43, 125, 251
HhaI	GCGC	2 cut(s)	144, 166
Hin6I	GCGC	2 cut(s)	142, 164
HinP1I	GCGC	2 cut(s)	142, 164
HinfI	GANTC	4 cut(s)	64, 148, 197, 398
HpaII	CCGG	3 cut(s)	43, 125, 251
Hpy188I	TCNGA	3 cut(s)	69, 216, 238
Hpy188III	TCNNGA	4 cut(s)	11, 264, 407, 437
HpyAV	CCTTC	2 cut(s)	355, 415
HpyCH4III	ACNGT	2 cut(s)	244, 458
HpyF3I	CTNAG	2 cut(s)	12, 154
HspAI	GCGC	2 cut(s)	142, 164
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	69, 385, 433
LmnI	GCTCC	4 cut(s)	13, 29, 319, 409
LpnPI	CCDG	9 cut(s)	24, 56, 59, 86, 138, 249, 264, 392, 405
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	201, 437
MalI	GATC	3 cut(s)	71, 387, 435
MboI	GATC	3 cut(s)	69, 385, 433
MboII	GAAGA	3 cut(s)	71, 116, 182
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	4 cut(s)	183, 301, 345, 353
MnlI	CCTC	4 cut(s)	70, 121, 291, 333
MseI	TTAA	5 cut(s)	182, 282, 348, 356, 426
MspI	CCGG	3 cut(s)	43, 125, 251
MspR9I	CCNGG	3 cut(s)	43, 44, 74
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	2 cut(s)	144, 166
NciI	CCSGG	2 cut(s)	43, 44
NdeII	GATC	3 cut(s)	69, 385, 433
NmeAIII	GCCGAG	1 cut(s)	363
PfeI	GAWTC	4 cut(s)	64, 148, 197, 398
PflMI	CCANNNNNTGG	1 cut(s)	275
PfoI	TCCNGGA	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	141, 211
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	433
SaqAI	TTAA	5 cut(s)	182, 282, 348, 356, 426
SatI	GCNGC	2 cut(s)	140, 210
Sau3AI	GATC	3 cut(s)	69, 385, 433
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	3 cut(s)	43, 44, 74
SetI	ASST	3 cut(s)	10, 81, 426
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	266
SmaI	CCCGGG	1 cut(s)	44
Sse9I	AATT	4 cut(s)	183, 301, 345, 353
SsiI	CCGC	2 cut(s)	139, 287
SspMI	CTAG	2 cut(s)	201, 437
StyD4I	CCNGG	3 cut(s)	41, 42, 72
TaaI	ACNGT	2 cut(s)	244, 458
TaqI	TCGA	1 cut(s)	465
TasI	AATT	4 cut(s)	183, 301, 345, 353
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	4 cut(s)	64, 148, 197, 398
Tru1I	TTAA	5 cut(s)	182, 282, 348, 356, 426
Tru9I	TTAA	5 cut(s)	182, 282, 348, 356, 426
TscAI	CASTG	2 cut(s)	39, 461
TseI	GCWGC	1 cut(s)	209
TspGWI	ACGGA	1 cut(s)	332
TspMI	CCCGGG	1 cut(s)	42
TspRI	CASTG	2 cut(s)	39, 461
Van91I	CCANNNNNTGG	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	301
XbaI	TCTAGA	1 cut(s)	436
XmaI	CCCGGG	1 cut(s)	42
XspI	CTAG	2 cut(s)	201, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.