Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006969

Physical Location & Seq

Genomic Coordinates Reverse (-)

13931228 .. 13934871

Gene Structure 3644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTGGTGGAGATCTGGATTGTGGGAGTGGTTTTCAAGTGTGGTTCTAAGTTTTTTGAGTCTAATGGAGGGGGTTATAGAGGATTTGGTATCCAAACTGGTTTTATCTGAGGCGGAAGACTTGAAGGTGATACAACTCGATGATGCCGACCAACTGGCACTCAAGAAGTTTTGGTTAGTTGGTAGGCTCTTGACGTCGAAACCATACCATAAGGAATCTCTTAGCAGTACTATGAAGCGGATCTGGAGGATTCGAGGGGAGGGCAGTCCGTGGACGTTTGATAACGCTTTGCGATTACTCTCGGCAACAGATGGGAGAACAGATCTAGTTAAGGGCTGGAAATTGTCAGCTCCACCAGAGAGTTTGCTGCTTACAGGAGGAGTGCGATCAAGGGAGGAGTTTACGGCTCATTCTGGCCTGGCGGAGACCGATATGTTGGTAGATTCCGGTGAGGGGGTGGTGGAGCAAACGTCGATAGAGGCAGAGGCGAAGAGAAGGCGCATAATTGATGGTAATTGCCTTAATGAGGTTTCTCAATCAGATCCGATGTTAGGGGAGGTCACAAAATCAAAGGAAGGCCAAATTAATACTGATTGCCTTCCTTTGGGGATTATGATTGCTAATTCTGGGGAGGACCAAACTAATACTGATTGCCTTCCTTTGGGGATTACGATTGCTAATTATGGGGAGGAGATTGAAATCCCAAAAATTAAGGTAGGAGTTGGGGAGAATTTAGTGGACGCTGTGGCTTCAAATTCAAATTCAAATTTGAAGGTTGGGCCGTATAGTTCAGAAGATTTTGTGCAGACTTCTATTGGGCCGGAATTATCGACTGGAGAGTTGCCAAGTTCTGCTTGTGGGCCGGCGCTGGTCATGAAAACCATTGGAAAAGGTAGTGTTGTTAGGAAGCATTCTGGTGATAGAAAACTTGGAGAGAAGGAGTTTGTTATGAAGGAAGGGGCAATGTTTCATGCTGAATCTTTAACTCGACAAAATAGAAAGTTGAAGAATGTTTCGAAGAAGGGATTAGAGCCTGTAACTGTGAATTCACTGGGAACCAAACGGGGTTTCCCTGTAGGAGGGAGAGGACGGAAAAGAGGTGGTGCTGTTTCTTCTAGTGTTATGGAGCAAAGTAGAAGAAAAGAAGCCAAAACAACAAATCTTCCTGTGCAGATCAGTCAAATTCAAAATGAAACTGAGAACAGCTCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1

Protein Analysis

404

Amino Acids

44.12

Weight (kDa)

6.02

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006969)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008443
rosa_multiflora	Rmu_sc0000433.1_g000030
rosa_roxburghii	Rroxscaffold_3G00229450
rosa_samantha	Rh1BG120000 Rh2BG060500 Rh2CG062500 Rh2DG239300 Rh2DG288100 Rh3AG176700 Rh3BG202600 Rh3BG314100 Rh3CG192900 Rh3CG200100 Rh3DG172600 Rh5AG508800 Rh5BG530000 Rh5BG530100 Rh5CG554400 Rh5CG554500 Rh6AG027300 Rh6BG023200 Rh6BG023400 Rh6BG169600 Rh7DG276100
rosa_wichuraiana	Rw5G046860 Rw6G002310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	197
AciI	CCGC	3 cut(s)	113, 238, 422
AclWI	GGATC	2 cut(s)	248, 536
AcsI	RAATTY	6 cut(s)	730, 754, 760, 766, 1045, 1182
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	6 cut(s)	453, 526, 551, 604, 661, 1079
AgsI	TTSAA	9 cut(s)	36, 124, 698, 753, 759, 765, 772, 1006, 1187
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	1052, 1084
AluBI	AGCT	2 cut(s)	350, 1206
AluI	AGCT	2 cut(s)	350, 1206
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	2 cut(s)	248, 536
AoxI	GGCC	5 cut(s)	415, 577, 779, 818, 860
ApeKI	GCWGC	1 cut(s)	367
ApoI	RAATTY	6 cut(s)	730, 754, 760, 766, 1045, 1182
AseI	ATTAAT	1 cut(s)	585
AspLEI	GCGC	2 cut(s)	501, 868
AspS9I	GGNCC	4 cut(s)	634, 779, 818, 860
AsuHPI	GGTGA	3 cut(s)	139, 461, 929
AsuII	TTCGAA	1 cut(s)	1016
AvaII	GGWCC	1 cut(s)	634
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	2 cut(s)	305, 503
BceAI	ACGGC	2 cut(s)	420, 766
BciT130I	CCWGG	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	2 cut(s)	326, 1116
BfmI	CTRYAG	1 cut(s)	1074
BfoI	RGCGCY	1 cut(s)	869
BfuI	GTATCC	1 cut(s)	100
BglII	AGATCT	2 cut(s)	11, 322
BisI	GCNGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	369
BmcAI	AGTACT	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	634
BmgT120I	GGNCC	4 cut(s)	634, 779, 818, 860
BmiI	GGNNCC	1 cut(s)	1057
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	1061
BmsI	GCATC	1 cut(s)	133
BmuI	ACTGGG	1 cut(s)	1061
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	1 cut(s)	1190
BpmI	CTGGAG	2 cut(s)	265, 855
Bpu14I	TTCGAA	1 cut(s)	1016
BpuEI	CTTGAG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	698
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	6 cut(s)	453, 526, 551, 604, 661, 1079
Bse118I	RCCGGY	1 cut(s)	862
Bse1I	ACTGG	4 cut(s)	102, 159, 838, 1056
Bse3DI	GCAATG	1 cut(s)	969
Bse8I	GATNNNNATC	1 cut(s)	698
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	269
BseJI	GATNNNNATC	1 cut(s)	698
BseLI	CCNNNNNNNGG	6 cut(s)	453, 526, 551, 604, 661, 1079
BseMI	GCAATG	1 cut(s)	969
BseMII	CTCAG	2 cut(s)	99, 1188
BseNI	ACTGG	4 cut(s)	102, 159, 838, 1056
BseRI	GAGGAG	3 cut(s)	393, 410, 704
BseXI	GCAGC	1 cut(s)	354
BsgI	GTGCAG	2 cut(s)	824, 1190
BshFI	GGCC	5 cut(s)	417, 579, 781, 820, 862
BsiSI	CCGG	3 cut(s)	447, 821, 863
BslI	CCNNNNNNNGG	6 cut(s)	453, 526, 551, 604, 661, 1079
BsmAI	GTCTC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	5 cut(s)	417, 579, 781, 820, 862
Bso31I	GGTCTC	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	1016
Bsp143I	GATC	6 cut(s)	11, 240, 322, 386, 541, 1173
BspACI	CCGC	3 cut(s)	113, 238, 422
BspANI	GGCC	5 cut(s)	417, 579, 781, 820, 862
BspCNI	CTCAG	2 cut(s)	100, 1189
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	1 cut(s)	1057
BspPI	GGATC	2 cut(s)	248, 536
BspT104I	TTCGAA	1 cut(s)	1016
BspTNI	GGTCTC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	969
BsrFI	RCCGGY	1 cut(s)	862
BsrI	ACTGG	4 cut(s)	102, 159, 838, 1056
BssAI	RCCGGY	1 cut(s)	862
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	6 cut(s)	11, 240, 322, 386, 541, 1173
BssNI	GRCGYC	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	1042
Bst6I	CTCTTC	1 cut(s)	485
BstACI	GRCGYC	1 cut(s)	194
BstBI	TTCGAA	1 cut(s)	1016
BstC8I	GCNNGC	1 cut(s)	864
BstDEI	CTNAG	5 cut(s)	47, 108, 221, 1197, 1207
BstDSI	CCRYGG	1 cut(s)	269
BstENI	CCTNNNNNAGG	2 cut(s)	524, 1077
BstH2I	RGCGCY	1 cut(s)	869
BstHHI	GCGC	2 cut(s)	501, 868
BstKTI	GATC	6 cut(s)	14, 243, 325, 389, 544, 1176
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	6 cut(s)	11, 240, 322, 386, 541, 1173
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	1074
BstV1I	GCAGC	1 cut(s)	354
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	4 cut(s)	11, 240, 322, 541
BstYI	RGATCY	4 cut(s)	11, 240, 322, 541
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	5 cut(s)	417, 579, 781, 820, 862
BtgI	CCRYGG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	1049
Cac8I	GCNNGC	1 cut(s)	864
CciI	TCATGA	1 cut(s)	873
CfoI	GCGC	2 cut(s)	501, 868
Cfr10I	RCCGGY	1 cut(s)	862
Cfr13I	GGNCC	4 cut(s)	634, 779, 818, 860
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	874, 971
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	5 cut(s)	47, 108, 221, 1197, 1207
DpnI	GATC	6 cut(s)	13, 242, 324, 388, 543, 1175
DpnII	GATC	6 cut(s)	11, 240, 322, 386, 541, 1173
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
EciI	GGCGGA	2 cut(s)	128, 437
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	634
EcoNI	CCTNNNNNAGG	2 cut(s)	524, 1077
EcoRI	GAATTC	1 cut(s)	1045
EcoRII	CCWGG	1 cut(s)	417
FaeI	CATG	2 cut(s)	877, 974
FalI	AAGNNNNNCTT	2 cut(s)	838, 870
FatI	CATG	2 cut(s)	873, 970
Fnu4HI	GCNGC	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	368
FspBI	CTAG	2 cut(s)	326, 1116
GlaI	GCGC	2 cut(s)	500, 867
GluI	GCNGC	1 cut(s)	368
GsuI	CTGGAG	2 cut(s)	265, 855
HaeII	RGCGCY	1 cut(s)	869
HaeIII	GGCC	5 cut(s)	417, 579, 781, 820, 862
HapII	CCGG	3 cut(s)	447, 821, 863
HgaI	GACGC	1 cut(s)	749
HhaI	GCGC	2 cut(s)	501, 868
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	877, 974
Hin6I	GCGC	2 cut(s)	499, 866
HinP1I	GCGC	2 cut(s)	499, 866
HinfI	GANTC	5 cut(s)	58, 215, 250, 443, 977
HpaII	CCGG	3 cut(s)	447, 821, 863
HphI	GGTGA	3 cut(s)	139, 461, 929
Hpy166II	GTNNAC	3 cut(s)	273, 402, 739
Hpy188I	TCNGA	5 cut(s)	109, 541, 546, 793, 1210
Hpy188III	TCNNGA	5 cut(s)	15, 163, 190, 244, 874
Hpy8I	GTNNAC	3 cut(s)	273, 402, 739
Hpy99I	CGWCG	2 cut(s)	199, 475
HpyCH4III	ACNGT	1 cut(s)	1042
HpyCH4IV	ACGT	3 cut(s)	194, 275, 470
HpyCH4V	TGCA	2 cut(s)	805, 1171
HpyF3I	CTNAG	5 cut(s)	47, 108, 221, 1197, 1207
HpySE526I	ACGT	3 cut(s)	194, 275, 470
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	877, 974
HspAI	GCGC	2 cut(s)	499, 866
KroI	GCCGGC	1 cut(s)	862
KroNI	GCCGGC	1 cut(s)	864
Kzo9I	GATC	6 cut(s)	11, 240, 322, 386, 541, 1173
LmnI	GCTCC	3 cut(s)	355, 463, 1126
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	326, 1116
MaeII	ACGT	3 cut(s)	194, 275, 470
MaeIII	GTNAC	2 cut(s)	559, 1036
MalI	GATC	6 cut(s)	13, 242, 324, 388, 543, 1175
MboI	GATC	6 cut(s)	11, 240, 322, 386, 541, 1173
MboII	GAAGA	8 cut(s)	128, 502, 806, 1018, 1030, 1104, 1149, 1154
MflI	RGATCY	4 cut(s)	11, 240, 322, 541
MlyI	GAGTC	1 cut(s)	67
MroNI	GCCGGC	1 cut(s)	862
MseI	TTAA	5 cut(s)	330, 522, 585, 711, 983
MslI	CAYNNNNRTG	1 cut(s)	915
MspI	CCGG	3 cut(s)	447, 821, 863
MspR9I	CCNGG	1 cut(s)	419
Mva1269I	GAATGC	1 cut(s)	910
MvaI	CCWGG	1 cut(s)	419
NaeI	GCCGGC	1 cut(s)	864
NdeII	GATC	6 cut(s)	11, 240, 322, 386, 541, 1173
NgoMIV	GCCGGC	1 cut(s)	862
NlaIII	CATG	2 cut(s)	877, 974
NlaIV	GGNNCC	1 cut(s)	1057
NmeAIII	GCCGAG	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	559
NspV	TTCGAA	1 cut(s)	1016
PagI	TCATGA	1 cut(s)	873
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	910
PdiI	GCCGGC	1 cut(s)	864
PfeI	GAWTC	4 cut(s)	215, 250, 443, 977
PkrI	GCNGC	1 cut(s)	369
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PshBI	ATTAAT	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	1057
PspPI	GGNCC	4 cut(s)	634, 779, 818, 860
PsuI	RGATCY	4 cut(s)	11, 240, 322, 541
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	915
SaqAI	TTAA	5 cut(s)	330, 522, 585, 711, 983
SatI	GCNGC	1 cut(s)	368
Sau3AI	GATC	6 cut(s)	11, 240, 322, 386, 541, 1173
Sau96I	GGNCC	4 cut(s)	634, 779, 818, 860
ScaI	AGTACT	1 cut(s)	229
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	419
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	1074
SfuI	TTCGAA	1 cut(s)	1016
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	915
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SsiI	CCGC	3 cut(s)	113, 238, 422
SspMI	CTAG	2 cut(s)	326, 1116
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	1042
TaiI	ACGT	3 cut(s)	197, 278, 473
TaqI	TCGA	7 cut(s)	138, 197, 253, 473, 830, 988, 1016
TaqII	GACCGA	1 cut(s)	443
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	4 cut(s)	215, 250, 443, 977
Tru1I	TTAA	5 cut(s)	330, 522, 585, 711, 983
Tru9I	TTAA	5 cut(s)	330, 522, 585, 711, 983
TscAI	CASTG	1 cut(s)	1056
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	5 cut(s)	248, 890, 959, 965, 1206
TspGWI	ACGGA	2 cut(s)	258, 1105
TspRI	CASTG	1 cut(s)	1056
VpaK11BI	GGWCC	1 cut(s)	634
VspI	ATTAAT	1 cut(s)	585
XagI	CCTNNNNNAGG	2 cut(s)	524, 1077
XapI	RAATTY	6 cut(s)	730, 754, 760, 766, 1045, 1182
XspI	CTAG	2 cut(s)	326, 1116
ZraI	GACGTC	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.