Rh2DG239300

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006969
Physical Location & Seq
Reverse (-)
24195006 .. 24195548
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG239300.1

Sequence Viewer

Length: 543 bp
ATGGCGAAGCGTATTGGTGGGATTGTGGGGGTGTATGTGGATGATGATCTGGGGGTAGATGGTGATTGCATGGGAAGTTGCCTAAGGATCAGGGTGGGTCTCAATGTAACTCTTCTGTTACGTAGATGGATTCTGATGCAACTCCAACCAGGGGAGGATGAGACAAAACTGATACTAGAGTATGAAGATCTATCGTACTTCTGCTTCTTTTGTGGCCTCATGTCACATGTAGGGAATGCATGTGAGTTGAGGAAGTCTAGGGTGGTGATGGAGGTTAGGTATGGTAGATGGAAGATTGTAGCAAAAGGTGTTTACAGTATTGAACCATCCAATGGATTACAAGGTAGAAGGTTTGGGCAATTTAGTAGCAAACTGGGCTGGAGGTTGTCGGTGCCGCCGAAAAATGTGCCGTTGTCGGGCGGGGTACGTTCAAGGGAGGACTTCTTAGCGCATTCCGGTCCACTAGAGTTTGAGATGTGTATTGATTCCGAGGAAGGAGCGGCAGAACATCTGTCGGAGGGGCAGCGAAACGGCAGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

180

Amino Acids

20.06

Weight (kDa)

6.32

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 332
AccBSI CCGCTC 1 cut(s) 500
AciI CCGC 3 cut(s) 395, 420, 500
AclWI GGATC 1 cut(s) 95
AfaI GTAC 2 cut(s) 197, 426
AfiI CCNNNNNNNGG 3 cut(s) 151, 332, 416
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 2 cut(s) 323, 432
AjnI CCWGG 1 cut(s) 148
Alw26I GTCTC 2 cut(s) 104, 155
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 523, 534
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 458
AsuHPI GGTGA 2 cut(s) 74, 277
AvaII GGWCC 1 cut(s) 458
AxyI CCTNAGG 1 cut(s) 83
BaeI ACNNNNGTAYC 2 cut(s) 164, 197
BanI GGYRCC 1 cut(s) 391
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
BbvI GCAGC 1 cut(s) 535
BccI CCATC 5 cut(s) 53, 120, 262, 282, 334
BceAI ACGGC 1 cut(s) 394
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 104, 155
BfaI CTAG 3 cut(s) 176, 258, 464
BglII AGATCT 1 cut(s) 187
BisI GCNGC 4 cut(s) 395, 501, 524, 535
BlsI GCNGC 4 cut(s) 396, 502, 525, 536
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 458
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 383
BmsI GCATC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 383
BpmI CTGGAG 1 cut(s) 400
BsaAI YACGTR 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 149, 489
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 332, 416
Bse1I ACTGG 1 cut(s) 378
Bse21I CCTNAGG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 149, 489
BseGI GGATG 3 cut(s) 46, 163, 326
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 3 cut(s) 151, 332, 416
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 535
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 391
BsiSI CCGG 1 cut(s) 456
BslI CCNNNNNNNGG 3 cut(s) 151, 332, 416
BsmAI GTCTC 2 cut(s) 104, 155
BsmI GAATGC 2 cut(s) 241, 451
BsnI GGCC 1 cut(s) 216
Bso31I GGTCTC 1 cut(s) 104
Bsp143I GATC 3 cut(s) 46, 87, 187
BspACI CCGC 3 cut(s) 395, 420, 500
BspANI GGCC 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 393
BspPI GGATC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 391
BspTNI GGTCTC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 500
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 2 cut(s) 149, 489
BssMI GATC 3 cut(s) 46, 87, 187
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 83, 445
BstF5I GGATG 3 cut(s) 46, 163, 326
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 49, 90, 190
BstMAI GTCTC 2 cut(s) 104, 155
BstMBI GATC 3 cut(s) 46, 87, 187
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 2 cut(s) 230, 243
BstSCI CCNGG 1 cut(s) 148
BstSNI TACGTA 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 535
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 83
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 3 cut(s) 46, 163, 326
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 458
Csp6I GTAC 2 cut(s) 196, 425
CviAII CATG 4 cut(s) 70, 220, 227, 240
CviJI RGCY 2 cut(s) 216, 378
CviKI_1 RGCY 2 cut(s) 216, 378
CviQI GTAC 2 cut(s) 196, 425
DdeI CTNAG 2 cut(s) 83, 445
DpnI GATC 3 cut(s) 48, 89, 189
DpnII GATC 3 cut(s) 46, 87, 187
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco105I TACGTA 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 458
Eco81I CCTNAGG 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 241
FaeI CATG 4 cut(s) 73, 223, 230, 243
FaiI YATR 8 cut(s) 36, 71, 183, 221, 228, 241, 282, 541
FatI CATG 4 cut(s) 69, 219, 226, 239
FauI CCCGC 1 cut(s) 413
Fnu4HI GCNGC 4 cut(s) 395, 501, 524, 535
FokI GGATG 3 cut(s) 53, 170, 313
Fsp4HI GCNGC 4 cut(s) 395, 501, 524, 535
FspBI CTAG 3 cut(s) 176, 258, 464
GlaI GCGC 1 cut(s) 450
GluI GCNGC 4 cut(s) 395, 501, 524, 535
GsuI CTGGAG 1 cut(s) 400
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 456
HhaI GCGC 1 cut(s) 451
Hin1II CATG 4 cut(s) 73, 223, 230, 243
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 2 cut(s) 130, 485
HpaII CCGG 1 cut(s) 456
HphI GGTGA 2 cut(s) 74, 277
Hpy166II GTNNAC 2 cut(s) 313, 461
Hpy188I TCNGA 3 cut(s) 135, 490, 517
Hpy8I GTNNAC 2 cut(s) 313, 461
HpyAV CCTTC 2 cut(s) 342, 488
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 2 cut(s) 121, 427
HpyCH4V TGCA 3 cut(s) 69, 139, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 2 cut(s) 83, 445
HpySE526I ACGT 2 cut(s) 121, 427
Hsp92II CATG 4 cut(s) 73, 223, 230, 243
HspAI GCGC 1 cut(s) 449
Kzo9I GATC 3 cut(s) 46, 87, 187
LmnI GCTCC 1 cut(s) 497
LpnPI CCDG 7 cut(s) 35, 76, 135, 162, 359, 364, 469
Lsp1109I GCAGC 1 cut(s) 535
LweI GCATC 1 cut(s) 126
MaeI CTAG 3 cut(s) 176, 258, 464
MaeII ACGT 2 cut(s) 121, 427
MaeIII GTNAC 3 cut(s) 106, 117, 222
MalI GATC 3 cut(s) 48, 89, 189
MbiI CCGCTC 1 cut(s) 500
MboI GATC 3 cut(s) 46, 87, 187
MboII GAAGA 3 cut(s) 104, 197, 304
MflI RGATCY 1 cut(s) 187
MluCI AATT 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 169, 495
MnlI CCTC 8 cut(s) 148, 227, 243, 265, 375, 430, 484, 511
Mph1103I ATGCAT 1 cut(s) 241
MspI CCGG 1 cut(s) 456
MspR9I CCNGG 1 cut(s) 150
Mva1269I GAATGC 2 cut(s) 241, 451
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 375
NdeII GATC 3 cut(s) 46, 87, 187
NlaIII CATG 4 cut(s) 73, 223, 230, 243
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 222
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 2 cut(s) 230, 243
PciI ACATGT 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PctI GAATGC 2 cut(s) 241, 451
PfeI GAWTC 2 cut(s) 130, 485
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 4 cut(s) 396, 502, 525, 536
Ppu21I YACGTR 1 cut(s) 122
PscI ACATGT 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 1 cut(s) 458
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 197, 426
RsaNI GTAC 2 cut(s) 196, 425
SatI GCNGC 4 cut(s) 395, 501, 524, 535
Sau3AI GATC 3 cut(s) 46, 87, 187
Sau96I GGNCC 1 cut(s) 458
ScrFI CCNGG 1 cut(s) 150
SetI ASST 8 cut(s) 124, 276, 281, 310, 346, 353, 386, 430
SfaNI GCATC 1 cut(s) 126
SinI GGWCC 1 cut(s) 458
SnaBI TACGTA 1 cut(s) 122
Sse9I AATT 1 cut(s) 359
SsiI CCGC 3 cut(s) 395, 420, 500
SspMI CTAG 3 cut(s) 176, 258, 464
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 2 cut(s) 124, 430
TasI AATT 1 cut(s) 359
TauI GCSGC 2 cut(s) 397, 503
TfiI GAWTC 2 cut(s) 130, 485
TseFI GTSAC 1 cut(s) 222
TseI GCWGC 2 cut(s) 523, 534
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 198
Van91I CCANNNNNTGG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 458
XceI RCATGY 2 cut(s) 230, 243
XspI CTAG 3 cut(s) 176, 258, 464
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.