Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006969

Physical Location & Seq

Genomic Coordinates Reverse (-)

3436680 .. 3437183

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG023200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTAGTGTGGCCTAACTTGCATGAGTTTCATGTTGACACGGGAGCTTTAGACCATCTGGCTTTACTGTTCAATACTGACGCCAATAGGTTGGCTACCATTTCTAGTAAGAGACGGAGATTCCAGTTCGAACCTTTATGGGCTAAAGAAGCCTCTTGTGAGGAGGTGATCTCTGCCAATTGGGCAGCTGTGAGGAGGGGCAGGTCTTTAATGGACCGTTTACTAGGGGTTGGGAAGTCTCTAACAACCTGGAATGAGGGCACAATTGGTCATGTCTCACGGAGAATTCAACAACTCAGAGATGAGCTCCATGATATCCCATTTGATCATCATAGTAGTGATATGCAGGCTAGACGCAGTTCTGTCAGGCAAGAGTTGGATAAATATGTGCGCCATAATGAGAATATTTGGCAGGCGCGTTCAAGGGTCGAGTGGCTGAAGATTGGGGATAATAATGCAAAATTCTTTCATATTTTTGCAAAAGCTAGAGGGTGGAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

167

Amino Acids

19.6

Weight (kDa)

9.98

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006969)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008443
rosa_multiflora	Rmu_sc0000433.1_g000030
rosa_roxburghii	Rroxscaffold_3G00229450
rosa_samantha	Rh1BG120000 Rh2BG060500 Rh2CG062500 Rh2DG239300 Rh2DG288100 Rh3AG176700 Rh3BG202600 Rh3BG314100 Rh3CG192900 Rh3CG200100 Rh3DG172600 Rh5AG508800 Rh5BG530000 Rh5BG530100 Rh5CG554400 Rh5CG554500 Rh6AG027300 Rh6BG023200 Rh6BG023400 Rh6BG169600 Rh7DG276100
rosa_wichuraiana	Rw5G046860 Rw6G002310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AccII	CGCG	1 cut(s)	418
AcsI	RAATTY	2 cut(s)	285, 461
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	73, 290, 423
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	4 cut(s)	47, 188, 307, 485
AluI	AGCT	4 cut(s)	47, 188, 307, 485
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	3 cut(s)	106, 243, 280
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	285, 461
AspLEI	GCGC	2 cut(s)	393, 418
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	250
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	3 cut(s)	106, 243, 280
BfaI	CTAG	4 cut(s)	105, 224, 351, 486
BfuAI	ACCTGC	1 cut(s)	192
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	250
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	250
BplI	GAGNNNNNCTC	4 cut(s)	155, 187, 291, 323
Bpu14I	TTCGAA	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	2 cut(s)	176, 208
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	418
BshFI	GGCC	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	309
BsmAI	GTCTC	3 cut(s)	106, 243, 280
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	13
Bsp119I	TTCGAA	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	263, 309
Bsp143I	GATC	2 cut(s)	168, 325
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	192
BspT104I	TTCGAA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	168, 325
BssNI	GRCGYC	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	69, 218
BstACI	GRCGYC	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	348, 414
BstDEI	CTNAG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	418
BstHHI	GCGC	2 cut(s)	393, 418
BstKTI	GATC	2 cut(s)	171, 328
BstMAI	GTCTC	3 cut(s)	106, 243, 280
BstMBI	GATC	2 cut(s)	168, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 149, 182
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	248
BstSLI	GKGCMC	1 cut(s)	263
BstUI	CGCG	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	348, 414
CfoI	GCGC	2 cut(s)	393, 418
Cfr13I	GGNCC	1 cut(s)	214
CseI	GACGC	2 cut(s)	89, 363
CviAII	CATG	4 cut(s)	23, 32, 272, 311
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	170, 327
DpnII	GATC	2 cut(s)	168, 325
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	248
EcoRV	GATATC	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	4 cut(s)	26, 35, 275, 314
FatI	CATG	4 cut(s)	22, 31, 271, 310
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	186
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	4 cut(s)	105, 224, 351, 486
GlaI	GCGC	2 cut(s)	392, 417
GluI	GCNGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	13
HgaI	GACGC	2 cut(s)	89, 363
HhaI	GCGC	2 cut(s)	393, 418
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	4 cut(s)	26, 35, 275, 314
Hin6I	GCGC	2 cut(s)	391, 416
HinP1I	GCGC	2 cut(s)	391, 416
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	120
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	37, 221
Hpy188I	TCNGA	1 cut(s)	299
Hpy8I	GTNNAC	2 cut(s)	37, 221
HpyCH4III	ACNGT	2 cut(s)	69, 218
HpyCH4V	TGCA	4 cut(s)	22, 346, 458, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 149, 182
HpyF3I	CTNAG	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	26, 35, 275, 314
HspAI	GCGC	2 cut(s)	391, 416
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	168, 325
LmnI	GCTCC	2 cut(s)	44, 312
LpnPI	CCDG	8 cut(s)	44, 137, 187, 235, 262, 332, 352, 398
Lsp1109I	GCAGC	1 cut(s)	197
MaeI	CTAG	4 cut(s)	105, 224, 351, 486
MalI	GATC	2 cut(s)	170, 327
MboI	GATC	2 cut(s)	168, 325
MboII	GAAGA	1 cut(s)	451
MfeI	CAATTG	2 cut(s)	178, 264
MhlI	GDGCHC	2 cut(s)	263, 309
MluCI	AATT	5 cut(s)	178, 264, 285, 461, 499
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	7 cut(s)	154, 157, 163, 186, 189, 250, 482
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	250
MunI	CAATTG	2 cut(s)	178, 264
MvaI	CCWGG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	418
MwoI	GCNNNNNNNGC	3 cut(s)	19, 149, 182
NdeII	GATC	2 cut(s)	168, 325
NlaIII	CATG	4 cut(s)	26, 35, 275, 314
NspV	TTCGAA	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	2 cut(s)	168, 325
Sau96I	GGNCC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	2 cut(s)	263, 309
SetI	ASST	9 cut(s)	49, 92, 136, 168, 190, 206, 251, 309, 487
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	5 cut(s)	178, 264, 285, 461, 499
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	4 cut(s)	105, 224, 351, 486
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	248
TaaI	ACNGT	2 cut(s)	69, 218
TaqI	TCGA	2 cut(s)	129, 429
TasI	AATT	5 cut(s)	178, 264, 285, 461, 499
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	20, 458
TspGWI	ACGGA	2 cut(s)	130, 295
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	285, 461
XspI	CTAG	4 cut(s)	105, 224, 351, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.