Rh2CG062500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006969
Physical Location & Seq
Reverse (-)
5142854 .. 5143633
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG062500.1

Sequence Viewer

Length: 780 bp
ATGGGGAGACGTATTGGTGGGATAGTAGGAATCTTTGTTGACATTGATCCAGGCGTGAAAGGGGATTATACAGGCAGTTGTTTAAGAATTCGAGTGGGTTTGAATGTCTCGAAACCGCTTCGTAGATGGATAAAGCTGGATTTAGGATGGGGGGAAGAGACTAAACTCAGACTGGAGTATGAAGATCTCCCATACTTTTGTTTTTACTATGGTGAGTTTTCACATGTTAGCTCGGGTTGTCCTGCTAAGAAATCTGGGCTCATCACAGAAGTACAGTATGGACGGTGGAGAATGCTGTCTAAGAATGTTTTTAACATTGAGCCGGATGGTCAATTGAAAGCTACTGCTTACGGTTTTACTAAAAAGAAGGAATCTTGGAAGATGACGGCCCCGGAGCAACAATTGATTGGGGTAACCCGATCTCGAGAGGAATGCTTCAGGGAAGGAACCAGTGTGGAGAATGTAATGGAGGTGGATAATCTGCAAGAGTTTGAAACTGAGGCTCCTTGGCCAGAGGCGAAACGACGGCGCGTGCTGCTACTTGTTGAAGCGCGTGGGAATCTTGCATCGGCTGAGCAACAAATCAGGAGGGAGTTGATTTCGAAGTCTGAGCCGTTAAGTCAGGATGCGAATTTGCAGGAATTAAATCTAAAGGAGATTTCTACGGGGTTTGTGAAGGCTAGTACAGATGCAGATTTGAAATTAATTGATAAAAGGGCGGTAATGTGGGAGGAAAAGGGAAGTCGGTTGTATCTTTTGGGCCGATACCAGCGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

259

Amino Acids

29.74

Weight (kDa)

8.92

Isoelectric Point (pI)

58.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 35 - 81 2.3e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 531, 553
AciI CCGC 3 cut(s) 116, 719, 772
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 2 cut(s) 87, 631
AcuI CTGAAG 1 cut(s) 421
AfaI GTAC 2 cut(s) 273, 685
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 5 cut(s) 103, 337, 494, 548, 700
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 3 cut(s) 136, 231, 341
AluI AGCT 3 cut(s) 136, 231, 341
Alw26I GTCTC 2 cut(s) 112, 152
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 2 cut(s) 232, 423
AoxI GGCC 3 cut(s) 387, 509, 760
ApeKI GCWGC 1 cut(s) 535
ApoI RAATTY 2 cut(s) 87, 631
AseI ATTAAT 1 cut(s) 704
AspLEI GCGC 2 cut(s) 531, 553
AspS9I GGNCC 2 cut(s) 388, 760
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 224
AsuII TTCGAA 1 cut(s) 602
AvaI CYCGRG 2 cut(s) 232, 423
BalI TGGCCA 1 cut(s) 511
BanII GRGCYC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 522
BccI CCATC 3 cut(s) 120, 141, 320
BceAI ACGGC 3 cut(s) 402, 542, 598
BcgI CGANNNNNNTGC 2 cut(s) 414, 448
BciT130I CCWGG 1 cut(s) 51
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 2 cut(s) 112, 152
BfaI CTAG 1 cut(s) 681
BglII AGATCT 1 cut(s) 184
BisI GCNGC 1 cut(s) 536
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 537
Bme1390I CCNGG 2 cut(s) 51, 392
BmeT110I CYCGRG 2 cut(s) 232, 423
BmgT120I GGNCC 2 cut(s) 388, 760
BmiI GGNNCC 3 cut(s) 390, 448, 504
BmrFI CCNGG 2 cut(s) 51, 392
BmsI GCATC 3 cut(s) 575, 616, 679
BpmI CTGGAG 1 cut(s) 194
Bpu1102I GCTNAGC 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 390, 506
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bse1I ACTGG 2 cut(s) 177, 450
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 390, 506
BseGI GGATG 3 cut(s) 152, 331, 631
BseMII CTCAG 4 cut(s) 181, 489, 564, 600
BseNI ACTGG 2 cut(s) 177, 450
BseXI GCAGC 1 cut(s) 522
Bsh1236I CGCG 2 cut(s) 531, 553
BshFI GGCC 3 cut(s) 389, 511, 762
BsiHKCI CYCGRG 2 cut(s) 232, 423
BsiSI CCGG 2 cut(s) 323, 392
BsmAI GTCTC 2 cut(s) 112, 152
BsmI GAATGC 2 cut(s) 297, 437
BsnI GGCC 3 cut(s) 389, 511, 762
BsoBI CYCGRG 2 cut(s) 232, 423
Bsp119I TTCGAA 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 3 cut(s) 46, 184, 419
Bsp1720I GCTNAGC 1 cut(s) 573
BspACI CCGC 3 cut(s) 116, 719, 772
BspANI GGCC 3 cut(s) 389, 511, 762
BspCNI CTCAG 4 cut(s) 180, 490, 565, 601
BspFNI CGCG 2 cut(s) 531, 553
BspLI GGNNCC 3 cut(s) 390, 448, 504
BspPI GGATC 1 cut(s) 41
BspT104I TTCGAA 1 cut(s) 602
BsrI ACTGG 2 cut(s) 177, 450
BssECI CCNNGG 2 cut(s) 390, 506
BssMI GATC 3 cut(s) 46, 184, 419
BssT1I CCWWGG 1 cut(s) 506
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 276, 285, 353
Bst6I CTCTTC 1 cut(s) 150
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 6 cut(s) 167, 246, 300, 498, 573, 609
BstEII GGTNACC 1 cut(s) 412
BstF5I GGATG 3 cut(s) 152, 331, 631
BstFNI CGCG 2 cut(s) 531, 553
BstHHI GCGC 2 cut(s) 531, 553
BstKTI GATC 3 cut(s) 49, 187, 422
BstMAI GTCTC 2 cut(s) 112, 152
BstMBI GATC 3 cut(s) 46, 184, 419
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 227
BstPI GGTNACC 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 49, 390
BstUI CGCG 2 cut(s) 531, 553
BstV1I GCAGC 1 cut(s) 522
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 3 cut(s) 389, 511, 762
BtsCI GGATG 3 cut(s) 152, 331, 631
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 533
CfoI GCGC 2 cut(s) 531, 553
Cfr13I GGNCC 2 cut(s) 388, 760
Csp6I GTAC 2 cut(s) 272, 684
CviAII CATG 1 cut(s) 224
CviQI GTAC 2 cut(s) 272, 684
DdeI CTNAG 6 cut(s) 167, 246, 300, 498, 573, 609
DpnI GATC 3 cut(s) 48, 186, 421
DpnII GATC 3 cut(s) 46, 184, 419
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 506
Eco24I GRGCYC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 421
Eco88I CYCGRG 2 cut(s) 232, 423
Eco91I GGTNACC 1 cut(s) 412
EcoO65I GGTNACC 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 506
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 506
FaeI CATG 1 cut(s) 227
FaiI YATR 6 cut(s) 69, 180, 193, 210, 225, 279
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 536
FokI GGATG 3 cut(s) 159, 338, 638
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 1 cut(s) 681
GlaI GCGC 2 cut(s) 530, 552
GluI GCNGC 1 cut(s) 536
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 389, 511, 762
HapII CCGG 2 cut(s) 323, 392
HhaI GCGC 2 cut(s) 531, 553
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 2 cut(s) 529, 551
HinP1I GCGC 2 cut(s) 529, 551
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 3 cut(s) 30, 371, 559
HpaII CCGG 2 cut(s) 323, 392
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 170, 610
Hpy188III TCNNGA 5 cut(s) 109, 423, 425, 586, 623
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 528
HpyAV CCTTC 3 cut(s) 361, 437, 670
HpyCH4III ACNGT 3 cut(s) 276, 285, 353
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 4 cut(s) 484, 566, 637, 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 6 cut(s) 167, 246, 300, 498, 573, 609
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 2 cut(s) 529, 551
Kzo9I GATC 3 cut(s) 46, 184, 419
LmnI GCTCC 2 cut(s) 394, 508
Lsp1109I GCAGC 1 cut(s) 522
LweI GCATC 3 cut(s) 575, 616, 679
MaeI CTAG 1 cut(s) 681
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 412
MalI GATC 3 cut(s) 48, 186, 421
MboI GATC 3 cut(s) 46, 184, 419
MboII GAAGA 3 cut(s) 167, 194, 391
MfeI CAATTG 2 cut(s) 332, 401
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 261
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 7 cut(s) 87, 332, 401, 631, 641, 701, 705
MluNI TGGCCA 1 cut(s) 511
MnlI CCTC 7 cut(s) 421, 463, 493, 508, 582, 724, 768
Mox20I TGGCCA 1 cut(s) 511
MscI TGGCCA 1 cut(s) 511
MseI TTAA 5 cut(s) 83, 312, 617, 644, 704
Msp20I TGGCCA 1 cut(s) 511
MspA1I CMGCKG 1 cut(s) 772
MspI CCGG 2 cut(s) 323, 392
MspR9I CCNGG 2 cut(s) 51, 392
MunI CAATTG 2 cut(s) 332, 401
Mva1269I GAATGC 2 cut(s) 297, 437
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 2 cut(s) 531, 553
MwoI GCNNNNNNNGC 1 cut(s) 535
NciI CCSGG 1 cut(s) 392
NdeII GATC 3 cut(s) 46, 184, 419
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 3 cut(s) 390, 448, 504
NspI RCATGY 1 cut(s) 227
NspV TTCGAA 1 cut(s) 602
PaeR7I CTCGAG 1 cut(s) 423
PciI ACATGT 1 cut(s) 223
PctI GAATGC 2 cut(s) 297, 437
PfeI GAWTC 3 cut(s) 30, 371, 559
PkrI GCNGC 1 cut(s) 537
PscI ACATGT 1 cut(s) 223
PshBI ATTAAT 1 cut(s) 704
Psp6I CCWGG 1 cut(s) 49
PspEI GGTNACC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 3 cut(s) 390, 448, 504
PspPI GGNCC 2 cut(s) 388, 760
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 2 cut(s) 273, 685
RsaNI GTAC 2 cut(s) 272, 684
SaqAI TTAA 5 cut(s) 83, 312, 617, 644, 704
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 3 cut(s) 46, 184, 419
Sau96I GGNCC 2 cut(s) 388, 760
ScrFI CCNGG 2 cut(s) 51, 392
SduI GDGCHC 1 cut(s) 261
SetI ASST 6 cut(s) 13, 138, 233, 343, 474, 779
SfaNI GCATC 3 cut(s) 575, 616, 679
Sfr274I CTCGAG 1 cut(s) 423
SfuI TTCGAA 1 cut(s) 602
SlaI CTCGAG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 7 cut(s) 87, 332, 401, 631, 641, 701, 705
SsiI CCGC 3 cut(s) 116, 719, 772
SspMI CTAG 1 cut(s) 681
StyD4I CCNGG 2 cut(s) 49, 390
StyI CCWWGG 1 cut(s) 506
TaaI ACNGT 3 cut(s) 276, 285, 353
TaiI ACGT 1 cut(s) 13
TaqI TCGA 4 cut(s) 91, 110, 424, 602
TasI AATT 7 cut(s) 87, 332, 401, 631, 641, 701, 705
TatI WGTACW 2 cut(s) 271, 683
TfiI GAWTC 3 cut(s) 30, 371, 559
Tru1I TTAA 5 cut(s) 83, 312, 617, 644, 704
Tru9I TTAA 5 cut(s) 83, 312, 617, 644, 704
TscAI CASTG 1 cut(s) 457
TseI GCWGC 1 cut(s) 535
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 1 cut(s) 457
VspI ATTAAT 1 cut(s) 704
XapI RAATTY 2 cut(s) 87, 631
XceI RCATGY 1 cut(s) 227
XhoI CTCGAG 1 cut(s) 423
XspI CTAG 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.