Rh3AG176700

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006969
Physical Location & Seq
Forward (+)
16472872 .. 16483869
10998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG176700.1

Sequence Viewer

Length: 912 bp
ATGGCCCGCAGAATTGGAGGCATTTTGGGAGTGTTTGTTGGATTGGATCCACATAAGAAAAGTGATTGCACGGGAAGTGTTCTTCTCATACGAGTTGGGTTGGATGTCTCCCAGCCACTACGGCGATGGATCAAATTGGATTTGGGGTTGGGGGAGGAATCCAAGTTGCATCTAGAGTATGAAGATCTACCCTATTTCTGCTTCTACTGTGGACGTCTTTCCCATTATGGTCGGTGGAAAACTTTATTGAAGAATGTGTTCACCATTGACCCAGAGTGCCAGTTGAAGGGAGCGTCTTTTGGTCTCATCAAGGACAAGTTGCAGTGGAAGATGACAGCTCCTGAGCCTATGTTGAGTGGAGCAGTGCGTTCCCGGGCAGAATGGGTTGAAGAGAATCCGATCCAGGAGGTTAGAATGGATGTAGATGGAGTTGAAGAGATGGTGGAGAAACAGCCGGAGGCAAAACGGCGGCGCGTGATTCCCTTAGCCAAAGCGCGTGAAGATGGAGTGTTAATTATGGGGAGTGATTCTAGGGATGCTGCTCTGATTTCTCTCCCTTTGATTTCGGAGACGGTTTTGCCGGAGTTTATGTCTGGACCAATGGTTGGTATTAAAGCGGGAATAGAGAGGAATTTGGGTTTGGATACGGTTTCTCACGAAGTGGGTGGGCCGGGTGAGAATGGGCCTACTGGTTCAGTTGCTAAGTCCAGAGGGAGGCCCAGAAGTGTATCAGTTGATTATAAACTCCTTAATAATGGGAGTGTGGGCAAGAGTACTTCTAGAAATTTCCAGAAGGAGTTGATTTCCGGTGATCTAGATCAAGAAGCGTCAAGAACTCAACCATGGAGCAAGGATCGAGATGCCCAAGAATTTATAGCACTCTCCAAACCTCTTCACCTTATGAATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

303

Amino Acids

33.63

Weight (kDa)

7.67

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 34 - 75 3e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 741
AatII GACGTC 1 cut(s) 217
AccB7I CCANNNNNTGG 1 cut(s) 605
AccII CGCG 2 cut(s) 474, 496
AciI CCGC 3 cut(s) 7, 469, 617
AclWI GGATC 5 cut(s) 41, 54, 137, 394, 861
AcsI RAATTY 4 cut(s) 631, 784, 869, 904
AcyI GRCGYC 1 cut(s) 214
AdeI CACNNNGTG 1 cut(s) 661
AfaI GTAC 1 cut(s) 775
AfiI CCNNNNNNNGG 3 cut(s) 286, 605, 714
AgsI TTSAA 4 cut(s) 250, 286, 389, 434
AjnI CCWGG 1 cut(s) 402
AjuI GAANNNNNNNTTGG 2 cut(s) 623, 655
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
Alw26I GTCTC 3 cut(s) 112, 308, 563
AlwI GGATC 5 cut(s) 41, 54, 137, 394, 861
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 4 cut(s) 3, 668, 683, 716
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 4 cut(s) 631, 784, 869, 904
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 2 cut(s) 474, 496
AspS9I GGNCC 5 cut(s) 4, 596, 668, 683, 717
AsuC2I CCSGG 3 cut(s) 373, 374, 672
AsuHPI GGTGA 4 cut(s) 253, 686, 821, 887
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 1 cut(s) 596
BamHI GGATCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 526
BccI CCATC 4 cut(s) 120, 419, 433, 497
BceAI ACGGC 2 cut(s) 137, 482
BciT130I CCWGG 1 cut(s) 404
BciVI GTATCC 1 cut(s) 637
BcnI CCSGG 3 cut(s) 373, 374, 672
BcoDI GTCTC 3 cut(s) 112, 308, 563
BfaI CTAG 4 cut(s) 173, 531, 780, 815
BfuI GTATCC 1 cut(s) 637
BglI GCCNNNNNGGC 1 cut(s) 121
BglII AGATCT 1 cut(s) 184
BisI GCNGC 2 cut(s) 470, 540
BlsI GCNGC 2 cut(s) 471, 541
BmcAI AGTACT 1 cut(s) 775
Bme1390I CCNGG 4 cut(s) 373, 374, 404, 672
Bme18I GGWCC 1 cut(s) 596
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 5 cut(s) 4, 596, 668, 683, 717
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 4 cut(s) 373, 374, 404, 672
BmsI GCATC 3 cut(s) 178, 526, 850
Bpu10I CCTNAGC 2 cut(s) 342, 484
BpuMI CCSGG 3 cut(s) 373, 374, 672
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 2 cut(s) 372, 842
BsaWI WCCGGW 1 cut(s) 806
BsaXI ACNNNNNCTCC 4 cut(s) 21, 51, 575, 605
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 605, 714
Bse1I ACTGG 2 cut(s) 280, 694
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 2 cut(s) 372, 842
BseGI GGATG 3 cut(s) 109, 424, 541
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 3 cut(s) 286, 605, 714
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 280, 694
BseXI GCAGC 1 cut(s) 526
BseYI CCCAGC 1 cut(s) 111
Bsh1236I CGCG 2 cut(s) 474, 496
BshFI GGCC 4 cut(s) 5, 670, 685, 718
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 5 cut(s) 373, 455, 581, 671, 807
BslI CCNNNNNNNGG 3 cut(s) 286, 605, 714
BsmAI GTCTC 3 cut(s) 112, 308, 563
BsmBI CGTCTC 1 cut(s) 563
BsnI GGCC 4 cut(s) 5, 670, 685, 718
Bso31I GGTCTC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 372
Bsp143I GATC 7 cut(s) 46, 129, 184, 399, 811, 817, 853
Bsp19I CCATGG 1 cut(s) 842
BspACI CCGC 3 cut(s) 7, 469, 617
BspANI GGCC 4 cut(s) 5, 670, 685, 718
BspCNI CTCAG 1 cut(s) 334
BspFNI CGCG 2 cut(s) 474, 496
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 5 cut(s) 41, 54, 137, 394, 861
BspTNI GGTCTC 1 cut(s) 308
BsrI ACTGG 2 cut(s) 280, 694
BssECI CCNNGG 2 cut(s) 372, 842
BssMI GATC 7 cut(s) 46, 129, 184, 399, 811, 817, 853
BssNI GRCGYC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 842
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 3 cut(s) 209, 574, 649
Bst6I CTCTTC 3 cut(s) 384, 429, 897
BstACI GRCGYC 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 342, 484, 702
BstDSI CCRYGG 1 cut(s) 842
BstF5I GGATG 3 cut(s) 109, 424, 541
BstFNI CGCG 2 cut(s) 474, 496
BstHHI GCGC 2 cut(s) 474, 496
BstKTI GATC 7 cut(s) 49, 132, 187, 402, 814, 820, 856
BstMAI GTCTC 3 cut(s) 112, 308, 563
BstMBI GATC 7 cut(s) 46, 129, 184, 399, 811, 817, 853
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 404
BstSCI CCNGG 4 cut(s) 371, 372, 402, 670
BstUI CGCG 2 cut(s) 474, 496
BstV1I GCAGC 1 cut(s) 526
BstX2I RGATCY 2 cut(s) 46, 184
BstYI RGATCY 2 cut(s) 46, 184
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 4 cut(s) 5, 670, 685, 718
BtgI CCRYGG 1 cut(s) 842
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 3 cut(s) 109, 424, 541
BtsI GCAGTG 2 cut(s) 329, 369
BtsIMutI CAGTG 2 cut(s) 329, 369
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 341
CfoI GCGC 2 cut(s) 474, 496
Cfr13I GGNCC 5 cut(s) 4, 596, 668, 683, 717
Cfr9I CCCGGG 1 cut(s) 372
CseI GACGC 2 cut(s) 282, 816
Csp6I GTAC 1 cut(s) 774
CviAII CATG 1 cut(s) 843
CviJI RGCY 9 cut(s) 5, 115, 338, 346, 454, 488, 670, 685, 718
CviKI_1 RGCY 9 cut(s) 5, 115, 338, 346, 454, 488, 670, 685, 718
CviQI GTAC 1 cut(s) 774
DdeI CTNAG 3 cut(s) 342, 484, 702
DpnI GATC 7 cut(s) 48, 131, 186, 401, 813, 819, 855
DpnII GATC 7 cut(s) 46, 129, 184, 399, 811, 817, 853
DraIII CACNNNGTG 1 cut(s) 661
Eam1104I CTCTTC 3 cut(s) 384, 429, 897
EarI CTCTTC 3 cut(s) 384, 429, 897
Eco130I CCWWGG 1 cut(s) 842
Eco31I GGTCTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 842
ErhI CCWWGG 1 cut(s) 842
Esp3I CGTCTC 1 cut(s) 563
FaeI CATG 1 cut(s) 846
FatI CATG 1 cut(s) 842
FauI CCCGC 2 cut(s) 14, 610
Fnu4HI GCNGC 2 cut(s) 470, 540
FokI GGATG 3 cut(s) 116, 431, 548
Fsp4HI GCNGC 2 cut(s) 470, 540
FspBI CTAG 4 cut(s) 173, 531, 780, 815
GlaI GCGC 2 cut(s) 473, 495
GluI GCNGC 2 cut(s) 470, 540
GsaI CCCAGC 1 cut(s) 115
HaeIII GGCC 4 cut(s) 5, 670, 685, 718
HapII CCGG 5 cut(s) 373, 455, 581, 671, 807
HgaI GACGC 2 cut(s) 282, 816
HhaI GCGC 2 cut(s) 474, 496
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 1 cut(s) 846
Hin6I GCGC 2 cut(s) 472, 494
HinP1I GCGC 2 cut(s) 472, 494
HinfI GANTC 4 cut(s) 158, 394, 478, 527
HpaII CCGG 5 cut(s) 373, 455, 581, 671, 807
HphI GGTGA 4 cut(s) 253, 686, 821, 887
Hpy166II GTNNAC 2 cut(s) 212, 261
Hpy188I TCNGA 3 cut(s) 399, 546, 568
Hpy8I GTNNAC 2 cut(s) 212, 261
HpyAV CCTTC 2 cut(s) 280, 787
HpyCH4III ACNGT 3 cut(s) 209, 574, 649
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 69, 169, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 3 cut(s) 342, 484, 702
HpySE526I ACGT 1 cut(s) 214
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 1 cut(s) 846
HspAI GCGC 2 cut(s) 472, 494
Kzo9I GATC 7 cut(s) 46, 129, 184, 399, 811, 817, 853
LmnI GCTCC 4 cut(s) 290, 343, 359, 846
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 3 cut(s) 178, 526, 850
MaeI CTAG 4 cut(s) 173, 531, 780, 815
MaeII ACGT 1 cut(s) 214
MalI GATC 7 cut(s) 48, 131, 186, 401, 813, 819, 855
MboI GATC 7 cut(s) 46, 129, 184, 399, 811, 817, 853
MboII GAAGA 8 cut(s) 74, 194, 262, 340, 401, 446, 512, 884
MflI RGATCY 2 cut(s) 46, 184
MluCI AATT 7 cut(s) 12, 134, 513, 631, 784, 869, 904
MmeI TCCRAC 2 cut(s) 19, 81
MnlI CCTC 8 cut(s) 11, 148, 400, 451, 621, 704, 708, 900
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 3 cut(s) 512, 612, 750
MspI CCGG 5 cut(s) 373, 455, 581, 671, 807
MspR9I CCNGG 4 cut(s) 373, 374, 404, 672
MvaI CCWGG 1 cut(s) 404
MvnI CGCG 2 cut(s) 474, 496
MwoI GCNNNNNNNGC 1 cut(s) 121
NciI CCSGG 3 cut(s) 373, 374, 672
NcoI CCATGG 1 cut(s) 842
NdeII GATC 7 cut(s) 46, 129, 184, 399, 811, 817, 853
NlaIII CATG 1 cut(s) 846
NlaIV GGNNCC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 4 cut(s) 158, 394, 478, 527
PflMI CCANNNNNTGG 1 cut(s) 605
PfoI TCCNGGA 1 cut(s) 402
PkrI GCNGC 2 cut(s) 471, 541
PsiI TTATAA 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 5 cut(s) 4, 596, 668, 683, 717
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 2 cut(s) 46, 184
RsaI GTAC 1 cut(s) 775
RsaNI GTAC 1 cut(s) 774
SaqAI TTAA 3 cut(s) 512, 612, 750
SatI GCNGC 2 cut(s) 470, 540
Sau3AI GATC 7 cut(s) 46, 129, 184, 399, 811, 817, 853
Sau96I GGNCC 5 cut(s) 4, 596, 668, 683, 717
ScaI AGTACT 1 cut(s) 775
ScrFI CCNGG 4 cut(s) 373, 374, 404, 672
SetI ASST 5 cut(s) 217, 340, 411, 892, 900
SfaNI GCATC 3 cut(s) 178, 526, 850
SinI GGWCC 1 cut(s) 596
SmaI CCCGGG 1 cut(s) 374
Sse9I AATT 7 cut(s) 12, 134, 513, 631, 784, 869, 904
SsiI CCGC 3 cut(s) 7, 469, 617
SspMI CTAG 4 cut(s) 173, 531, 780, 815
StyD4I CCNGG 4 cut(s) 371, 372, 402, 670
StyI CCWWGG 1 cut(s) 842
TaaI ACNGT 3 cut(s) 209, 574, 649
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 856
TasI AATT 7 cut(s) 12, 134, 513, 631, 784, 869, 904
TatI WGTACW 1 cut(s) 773
TauI GCSGC 1 cut(s) 472
TfiI GAWTC 4 cut(s) 158, 394, 478, 527
Tru1I TTAA 3 cut(s) 512, 612, 750
Tru9I TTAA 3 cut(s) 512, 612, 750
TscAI CASTG 2 cut(s) 329, 369
TseI GCWGC 1 cut(s) 539
TspDTI ATGAA 1 cut(s) 195
TspMI CCCGGG 1 cut(s) 372
TspRI CASTG 2 cut(s) 329, 369
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 596
XapI RAATTY 4 cut(s) 631, 784, 869, 904
XbaI TCTAGA 3 cut(s) 172, 779, 814
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
XmaI CCCGGG 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 4 cut(s) 173, 531, 780, 815
ZraI GACGTC 1 cut(s) 215
ZrmI AGTACT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.