Rh2DG288100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006969
Physical Location & Seq
Reverse (-)
33583804 .. 33584517
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG288100.1

Sequence Viewer

Length: 714 bp
ATGCAACTGAATCCGGGGGAAGCAGAGACAAAATTATTATTGGAATATGAAGACCTGCCGTATTTTTGCTTCTTTTGTGGTCTCATGTCACATGTAGGTAGTGCTTGTGAACTAAGAAAGAGTGGAGAGGTGACGGATGCTCGAAATGGGAGATGGAAGACGTTATCCAAAGGGGTTTACAGCATTGAGCCGGTCAATGGCATGCAAGGTAGAAGATTTGGATTGTTTACCAACGAACCGGGCTGGAAATTGTCAGCTCCATCGGAGAGTTTGCCGCTTACAGGAGGAGTGCGATCAAGGGAGGAGTTTGCGGCTCATTCTGGCCTGGAGGAGACCGATATTTTGGTGGATTCCGGTGAGGGTGTGGTGGAGCAATCGCCGATAGAGGCGGCGGCGAAGAGAAGGCGCATAATTGATGGTAATTGCCTTAATGAGGTTTCTCAATCAGTTCTGATGTTAGGGGAGGTCACGAAATCAAAGGAGGGCCAAATTAATAATGATTGCCTTCCTTTGGGGATTATGATTGCTAATTCTGGGGAGGACCAAACTAATACTGATTGCCTTCCTTCGGGGATTACGATGGCTAATTATGGGGAGGAGATTGAAATCCCAAAAATTAAAGCGGGAGTTGGGGAGAATTTAGTGGACGTTGTGGCTTCAAATTCAAATTCAAAGTTGAAGGTTGGGCCGCATAGTTCAAAAGAGTTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

237

Amino Acids

25.63

Weight (kDa)

4.86

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AciI CCGC 6 cut(s) 275, 311, 389, 392, 623, 689
AcsI RAATTY 3 cut(s) 637, 661, 667
AfiI CCNNNNNNNGG 5 cut(s) 197, 281, 433, 511, 568
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 6 cut(s) 605, 660, 666, 672, 679, 699
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw26I GTCTC 3 cut(s) 20, 86, 326
AoxI GGCC 3 cut(s) 322, 484, 686
ApoI RAATTY 3 cut(s) 637, 661, 667
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AseI ATTAAT 1 cut(s) 492
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 3 cut(s) 484, 541, 686
AsuC2I CCSGG 2 cut(s) 15, 240
AsuHPI GGTGA 2 cut(s) 142, 368
AvaII GGWCC 1 cut(s) 541
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BbsI GAAGAC 2 cut(s) 57, 164
BccI CCATC 4 cut(s) 147, 268, 410, 574
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 326
BcnI CCSGG 2 cut(s) 15, 240
BcoDI GTCTC 3 cut(s) 20, 86, 326
BfuAI ACCTGC 1 cut(s) 63
BisI GCNGC 5 cut(s) 275, 312, 390, 393, 689
BlsI GCNGC 5 cut(s) 276, 313, 391, 394, 690
Bme1390I CCNGG 3 cut(s) 15, 240, 326
Bme18I GGWCC 1 cut(s) 541
BmgT120I GGNCC 3 cut(s) 484, 541, 686
BmrFI CCNGG 3 cut(s) 15, 240, 326
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 2 cut(s) 57, 164
BpmI CTGGAG 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 15, 240
BsaBI GATNNNNATC 1 cut(s) 605
BsaI GGTCTC 2 cut(s) 86, 326
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 5 cut(s) 197, 281, 433, 511, 568
Bse118I RCCGGY 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 605
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 605
BseLI CCNNNNNNNGG 5 cut(s) 197, 281, 433, 511, 568
BseRI GAGGAG 4 cut(s) 300, 317, 344, 611
BshFI GGCC 3 cut(s) 324, 486, 688
BsiSI CCGG 4 cut(s) 14, 191, 239, 354
BslI CCNNNNNNNGG 5 cut(s) 197, 281, 433, 511, 568
BsmAI GTCTC 3 cut(s) 20, 86, 326
BsnI GGCC 3 cut(s) 324, 486, 688
Bso31I GGTCTC 2 cut(s) 86, 326
Bsp143I GATC 1 cut(s) 293
BspACI CCGC 6 cut(s) 275, 311, 389, 392, 623, 689
BspANI GGCC 3 cut(s) 324, 486, 688
BspMI ACCTGC 1 cut(s) 63
BspTNI GGTCTC 2 cut(s) 86, 326
BsrFI RCCGGY 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 113
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 1 cut(s) 296
BstMAI GTCTC 3 cut(s) 20, 86, 326
BstMBI GATC 1 cut(s) 293
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 2 cut(s) 95, 205
BstSCI CCNGG 3 cut(s) 13, 238, 324
BstV2I GAAGAC 2 cut(s) 57, 164
BsuRI GGCC 3 cut(s) 324, 486, 688
BtsCI GGATG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 203
CfoI GCGC 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 3 cut(s) 484, 541, 686
CviAII CATG 3 cut(s) 85, 92, 202
CviJI RGCY 9 cut(s) 190, 243, 257, 314, 324, 486, 584, 656, 688
CviKI_1 RGCY 9 cut(s) 190, 243, 257, 314, 324, 486, 584, 656, 688
DdeI CTNAG 1 cut(s) 113
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco31I GGTCTC 2 cut(s) 86, 326
Eco47I GGWCC 1 cut(s) 541
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 324
FaeI CATG 3 cut(s) 88, 95, 205
FaiI YATR 9 cut(s) 48, 86, 93, 203, 410, 521, 591, 693, 712
FatI CATG 3 cut(s) 84, 91, 201
FauI CCCGC 1 cut(s) 616
Fnu4HI GCNGC 5 cut(s) 275, 312, 390, 393, 689
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 5 cut(s) 275, 312, 390, 393, 689
GlaI GCGC 1 cut(s) 407
GluI GCNGC 5 cut(s) 275, 312, 390, 393, 689
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 3 cut(s) 324, 486, 688
HapII CCGG 4 cut(s) 14, 191, 239, 354
HhaI GCGC 1 cut(s) 408
Hin1II CATG 3 cut(s) 88, 95, 205
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HinfI GANTC 2 cut(s) 10, 350
HpaII CCGG 4 cut(s) 14, 191, 239, 354
HphI GGTGA 2 cut(s) 142, 368
Hpy166II GTNNAC 4 cut(s) 110, 178, 228, 646
Hpy188I TCNGA 2 cut(s) 265, 453
Hpy188III TCNNGA 1 cut(s) 469
Hpy8I GTNNAC 4 cut(s) 110, 178, 228, 646
HpyAV CCTTC 5 cut(s) 396, 515, 572, 576, 673
HpyCH4IV ACGT 2 cut(s) 161, 648
HpyCH4V TGCA 2 cut(s) 4, 205
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 161, 648
Hsp92II CATG 3 cut(s) 88, 95, 205
HspAI GCGC 1 cut(s) 406
Kzo9I GATC 1 cut(s) 293
LmnI GCTCC 2 cut(s) 262, 370
LweI GCATC 1 cut(s) 127
MaeII ACGT 2 cut(s) 161, 648
MaeIII GTNAC 3 cut(s) 87, 130, 466
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 4 cut(s) 62, 169, 225, 409
MseI TTAA 3 cut(s) 429, 492, 618
MspI CCGG 4 cut(s) 14, 191, 239, 354
MspR9I CCNGG 3 cut(s) 15, 240, 326
MvaI CCWGG 1 cut(s) 326
NciI CCSGG 2 cut(s) 15, 240
NdeII GATC 1 cut(s) 293
NlaIII CATG 3 cut(s) 88, 95, 205
NmuCI GTSAC 3 cut(s) 87, 130, 466
NspI RCATGY 2 cut(s) 95, 205
PaeI GCATGC 1 cut(s) 205
PciI ACATGT 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 575
PfeI GAWTC 2 cut(s) 10, 350
PkrI GCNGC 5 cut(s) 276, 313, 391, 394, 690
PscI ACATGT 1 cut(s) 91
PshBI ATTAAT 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspPI GGNCC 3 cut(s) 484, 541, 686
SaqAI TTAA 3 cut(s) 429, 492, 618
SatI GCNGC 5 cut(s) 275, 312, 390, 393, 689
Sau3AI GATC 1 cut(s) 293
Sau96I GGNCC 3 cut(s) 484, 541, 686
ScrFI CCNGG 3 cut(s) 15, 240, 326
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 1 cut(s) 541
SphI GCATGC 1 cut(s) 205
SsiI CCGC 6 cut(s) 275, 311, 389, 392, 623, 689
StyD4I CCNGG 3 cut(s) 13, 238, 324
TaiI ACGT 2 cut(s) 164, 651
TaqI TCGA 1 cut(s) 142
TaqII GACCGA 1 cut(s) 350
TauI GCSGC 5 cut(s) 277, 314, 392, 395, 691
TfiI GAWTC 2 cut(s) 10, 350
Tru1I TTAA 3 cut(s) 429, 492, 618
Tru9I TTAA 3 cut(s) 429, 492, 618
TseFI GTSAC 3 cut(s) 87, 130, 466
Tsp45I GTSAC 3 cut(s) 87, 130, 466
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 541
VspI ATTAAT 1 cut(s) 492
XagI CCTNNNNNAGG 1 cut(s) 431
XapI RAATTY 3 cut(s) 637, 661, 667
XceI RCATGY 2 cut(s) 95, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.