Rh2BG060500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006969
Physical Location & Seq
Reverse (-)
4578136 .. 4578450
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG060500.1

Sequence Viewer

Length: 315 bp
ATGGAGGTGGATAATCTGCAAGAGTTTGAAACTGAGGCTCCTTGGCCAGAGGCGAAACGACGGCGCGTGCTGCTACTTGTTGAAGCGCGTGGGAATCTTGCATCGGCTGAGCAACAAATCAGGAGGGAGTTGATTTCGAAGTCTGAGCCGTTAAGTCAGGATGCGAATTTGCAGGAATTAAATCTAAAGGAGATTTCTACGGGGTTTGTGAAGGCTAGTACAGATGCAGATTTGAAATTAATTGATAAAAGGGCGGTAATGTGGGAGGAAAAGGGAAGTCGGTTGTATCTTTTGGGCCGATACCAGCGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

12.09

Weight (kDa)

6.35

Isoelectric Point (pI)

61.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 66, 88
AciI CCGC 2 cut(s) 254, 307
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 1 cut(s) 220
AgsI TTSAA 3 cut(s) 29, 83, 235
AoxI GGCC 2 cut(s) 44, 295
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 166
AseI ATTAAT 1 cut(s) 239
AspLEI GCGC 2 cut(s) 66, 88
AspS9I GGNCC 1 cut(s) 295
AsuII TTCGAA 1 cut(s) 137
BalI TGGCCA 1 cut(s) 46
BbvI GCAGC 1 cut(s) 57
BceAI ACGGC 2 cut(s) 77, 133
BfaI CTAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 71
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 39
BmsI GCATC 3 cut(s) 110, 151, 214
Bpu1102I GCTNAGC 1 cut(s) 108
Bpu14I TTCGAA 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 166
BseMII CTCAG 3 cut(s) 24, 99, 135
BseXI GCAGC 1 cut(s) 57
Bsh1236I CGCG 2 cut(s) 66, 88
BshFI GGCC 2 cut(s) 46, 297
BsnI GGCC 2 cut(s) 46, 297
Bsp119I TTCGAA 1 cut(s) 137
Bsp1720I GCTNAGC 1 cut(s) 108
BspACI CCGC 2 cut(s) 254, 307
BspANI GGCC 2 cut(s) 46, 297
BspCNI CTCAG 3 cut(s) 25, 100, 136
BspFNI CGCG 2 cut(s) 66, 88
BspLI GGNNCC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 3 cut(s) 33, 108, 144
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 2 cut(s) 66, 88
BstHHI GCGC 2 cut(s) 66, 88
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstUI CGCG 2 cut(s) 66, 88
BstV1I GCAGC 1 cut(s) 57
BsuRI GGCC 2 cut(s) 46, 297
BtsCI GGATG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 68
CfoI GCGC 2 cut(s) 66, 88
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 219
CviJI RGCY 6 cut(s) 38, 46, 107, 148, 215, 297
CviKI_1 RGCY 6 cut(s) 38, 46, 107, 148, 215, 297
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 3 cut(s) 33, 108, 144
EaeI YGGCCR 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 1 cut(s) 216
GlaI GCGC 2 cut(s) 65, 87
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 2 cut(s) 46, 297
HhaI GCGC 2 cut(s) 66, 88
Hin6I GCGC 2 cut(s) 64, 86
HinP1I GCGC 2 cut(s) 64, 86
HinfI GANTC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 121, 158
Hpy99I CGWCG 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 205
HpyCH4V TGCA 4 cut(s) 19, 101, 172, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 3 cut(s) 33, 108, 144
HspAI GCGC 2 cut(s) 64, 86
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 4 cut(s) 60, 106, 143, 158
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 3 cut(s) 110, 151, 214
MaeI CTAG 1 cut(s) 216
MlsI TGGCCA 1 cut(s) 46
MluCI AATT 4 cut(s) 166, 176, 236, 240
MluNI TGGCCA 1 cut(s) 46
MnlI CCTC 5 cut(s) 28, 43, 117, 259, 303
Mox20I TGGCCA 1 cut(s) 46
MscI TGGCCA 1 cut(s) 46
MseI TTAA 3 cut(s) 152, 179, 239
Msp20I TGGCCA 1 cut(s) 46
MspA1I CMGCKG 1 cut(s) 307
MvnI CGCG 2 cut(s) 66, 88
MwoI GCNNNNNNNGC 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 39
NspV TTCGAA 1 cut(s) 137
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 72
PshBI ATTAAT 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 295
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 152, 179, 239
SatI GCNGC 1 cut(s) 71
Sau96I GGNCC 1 cut(s) 295
SetI ASST 2 cut(s) 9, 314
SfaNI GCATC 3 cut(s) 110, 151, 214
SfuI TTCGAA 1 cut(s) 137
Sse9I AATT 4 cut(s) 166, 176, 236, 240
SsiI CCGC 2 cut(s) 254, 307
SspMI CTAG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 41
TaqI TCGA 1 cut(s) 137
TasI AATT 4 cut(s) 166, 176, 236, 240
TatI WGTACW 1 cut(s) 218
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 3 cut(s) 152, 179, 239
Tru9I TTAA 3 cut(s) 152, 179, 239
TseI GCWGC 1 cut(s) 70
VspI ATTAAT 1 cut(s) 239
XapI RAATTY 1 cut(s) 166
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.