Rh6AG027300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006969
Physical Location & Seq
Reverse (-)
3414403 .. 3414891
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG027300.1

Sequence Viewer

Length: 489 bp
ATGGCAGTGTGGCCTAACTTGCATGAGTTTCATGTTGACGCGGGAGCTTCAGACCATTTGGCTTTACTGCTCAATACTGACGGCAATAGGTTGGCTACCATTTCTAGTAGGAGACGGAGATTCCAGTTCGAACCTTTATGGGCTAAAGAAGCCTCTTGTGAGGAGGTGATCTCTGCCAATTGGGCAGCGGTGAGGAGGGGCAGGTCTTTAATGGACCGTTTACTAGGGGTTGGGAAGTCTCTAACAGCCTGGAATAAGGGCACAATTGGTCATGTCCCACGGAGAATTCAACAACTCAGAGATGAGCTCTATGATATCCCATTTGATCATCCTAGTAGTGATATGCAGGCTAGACGTAGTTCTGTCAGGCAGGAGTTGGATAAATATGTGCGCCATAATGAGAATATTTGGTGGGCGCGTTCAAGGGTCGAGTGGCTGAAGAGTGGGGATAATAATACAAAATTGTTTCATATTTTTGCAAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

162

Amino Acids

18.82

Weight (kDa)

9.9

Isoelectric Point (pI)

60.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 192
AccII CGCG 2 cut(s) 41, 418
AciI CCGC 2 cut(s) 41, 188
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 2 cut(s) 33, 458
AgsI TTSAA 2 cut(s) 290, 423
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 3 cut(s) 47, 307, 485
AluI AGCT 3 cut(s) 47, 307, 485
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 2 cut(s) 106, 243
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 285
AspLEI GCGC 2 cut(s) 393, 418
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 178, 202
AsuII TTCGAA 1 cut(s) 129
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 250
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 106, 243
BfaI CTAG 4 cut(s) 105, 224, 333, 351
BfuAI ACCTGC 1 cut(s) 192
BglI GCCNNNNNGGC 1 cut(s) 182
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 250
BplI GAGNNNNNCTC 4 cut(s) 155, 187, 291, 323
Bpu14I TTCGAA 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 2 cut(s) 176, 208
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 1 cut(s) 197
Bsh1236I CGCG 2 cut(s) 41, 418
BshFI GGCC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 309
BslFI GGGAC 1 cut(s) 260
BsmAI GTCTC 2 cut(s) 106, 243
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 263, 309
Bsp143I GATC 2 cut(s) 168, 325
BspACI CCGC 2 cut(s) 41, 188
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 309
BspFNI CGCG 2 cut(s) 41, 418
BspMI ACCTGC 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 129
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 2 cut(s) 168, 325
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 296
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 2 cut(s) 41, 418
BstHHI GCGC 2 cut(s) 393, 418
BstKTI GATC 2 cut(s) 171, 328
BstMAI GTCTC 2 cut(s) 106, 243
BstMBI GATC 2 cut(s) 168, 325
BstMWI GCNNNNNNNGC 3 cut(s) 19, 149, 182
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 248
BstSLI GKGCMC 1 cut(s) 263
BstUI CGCG 2 cut(s) 41, 418
BstV1I GCAGC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 13
BtgI CCRYGG 1 cut(s) 278
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 348
CfoI GCGC 2 cut(s) 393, 418
Cfr13I GGNCC 1 cut(s) 214
CseI GACGC 1 cut(s) 47
CviAII CATG 3 cut(s) 23, 32, 272
DdeI CTNAG 1 cut(s) 296
DpnI GATC 2 cut(s) 170, 327
DpnII GATC 2 cut(s) 168, 325
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Ecl136II GAGCTC 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 309
Eco32I GATATC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 33, 458
EcoICRI GAGCTC 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 248
EcoRV GATATC 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 3 cut(s) 26, 35, 275
FaiI YATR 9 cut(s) 24, 33, 139, 273, 312, 344, 387, 396, 471
FaqI GGGAC 1 cut(s) 260
FatI CATG 3 cut(s) 22, 31, 271
FauI CCCGC 1 cut(s) 34
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 315
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 4 cut(s) 105, 224, 333, 351
GlaI GCGC 2 cut(s) 392, 417
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 1 cut(s) 13
HgaI GACGC 1 cut(s) 47
HhaI GCGC 2 cut(s) 393, 418
Hin1II CATG 3 cut(s) 26, 35, 275
Hin6I GCGC 2 cut(s) 391, 416
HinP1I GCGC 2 cut(s) 391, 416
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 1 cut(s) 120
HphI GGTGA 2 cut(s) 178, 202
Hpy166II GTNNAC 2 cut(s) 37, 221
Hpy188I TCNGA 2 cut(s) 52, 299
Hpy8I GTNNAC 2 cut(s) 37, 221
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 3 cut(s) 22, 346, 479
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 149, 182
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 3 cut(s) 26, 35, 275
HspAI GCGC 2 cut(s) 391, 416
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 2 cut(s) 168, 325
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 7 cut(s) 137, 187, 235, 262, 332, 352, 356
Lsp1109I GCAGC 1 cut(s) 197
MaeI CTAG 4 cut(s) 105, 224, 333, 351
MaeII ACGT 1 cut(s) 355
MalI GATC 2 cut(s) 170, 327
MboI GATC 2 cut(s) 168, 325
MboII GAAGA 1 cut(s) 451
MfeI CAATTG 2 cut(s) 178, 264
MhlI GDGCHC 2 cut(s) 263, 309
MluCI AATT 4 cut(s) 178, 264, 285, 461
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 5 cut(s) 154, 157, 163, 186, 189
MseI TTAA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 250
MunI CAATTG 2 cut(s) 178, 264
MvaI CCWGG 1 cut(s) 250
MvnI CGCG 2 cut(s) 41, 418
MwoI GCNNNNNNNGC 3 cut(s) 19, 149, 182
NdeII GATC 2 cut(s) 168, 325
NlaIII CATG 3 cut(s) 26, 35, 275
NspV TTCGAA 1 cut(s) 129
PfeI GAWTC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 187
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspPI GGNCC 1 cut(s) 214
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 168, 325
Sau96I GGNCC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 250
SduI GDGCHC 2 cut(s) 263, 309
SetI ASST 8 cut(s) 49, 92, 136, 168, 206, 309, 358, 487
SfuI TTCGAA 1 cut(s) 129
SinI GGWCC 1 cut(s) 214
Sse9I AATT 4 cut(s) 178, 264, 285, 461
SsiI CCGC 2 cut(s) 41, 188
SspI AATATT 1 cut(s) 406
SspMI CTAG 4 cut(s) 105, 224, 333, 351
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 358
TaqI TCGA 2 cut(s) 129, 429
TasI AATT 4 cut(s) 178, 264, 285, 461
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 1 cut(s) 12
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 20, 458
TspGWI ACGGA 2 cut(s) 130, 295
TspRI CASTG 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 285
XspI CTAG 4 cut(s) 105, 224, 333, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.