ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000008443 |
| rosa_multiflora | Rmu_sc0000433.1_g000030 |
| rosa_roxburghii | Rroxscaffold_3G00229450 |
| rosa_samantha | Rh1BG120000 Rh2BG060500 Rh2CG062500 Rh2DG239300 Rh2DG288100 Rh3AG176700 Rh3BG202600 Rh3BG314100 Rh3CG192900 Rh3CG200100 Rh3DG172600 Rh5AG508800 Rh5BG530000 Rh5BG530100 Rh5CG554400 Rh5CG554500 Rh6AG027300 Rh6BG023200 Rh6BG023400 Rh6BG169600 Rh7DG276100 |
| rosa_wichuraiana | Rw5G046860 Rw6G002310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 48 |
| AhlI | ACTAGT | 1 cut(s) | 80 |
| AjnI | CCWGG | 2 cut(s) | 56, 125 |
| AluBI | AGCT | 1 cut(s) | 172 |
| AluI | AGCT | 1 cut(s) | 172 |
| Alw26I | GTCTC | 1 cut(s) | 71 |
| AoxI | GGCC | 1 cut(s) | 123 |
| ApeKI | GCWGC | 1 cut(s) | 53 |
| AsuHPI | GGTGA | 1 cut(s) | 122 |
| BbsI | GAAGAC | 1 cut(s) | 54 |
| BbvI | GCAGC | 1 cut(s) | 65 |
| BccI | CCATC | 1 cut(s) | 182 |
| BciT130I | CCWGG | 2 cut(s) | 58, 127 |
| BclI | TGATCA | 1 cut(s) | 202 |
| BcoDI | GTCTC | 1 cut(s) | 71 |
| BcuI | ACTAGT | 1 cut(s) | 80 |
| BfaI | CTAG | 2 cut(s) | 81, 254 |
| BglII | AGATCT | 1 cut(s) | 250 |
| BisI | GCNGC | 1 cut(s) | 54 |
| BlsI | GCNGC | 1 cut(s) | 55 |
| Bme1390I | CCNGG | 2 cut(s) | 58, 127 |
| BmrFI | CCNGG | 2 cut(s) | 58, 127 |
| BpiI | GAAGAC | 1 cut(s) | 54 |
| BpmI | CTGGAG | 1 cut(s) | 107 |
| Bpu10I | CCTNAGC | 1 cut(s) | 173 |
| BsaJI | CCNNGG | 1 cut(s) | 155 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 80, 110 |
| BseBI | CCWGG | 2 cut(s) | 58, 127 |
| BseDI | CCNNGG | 1 cut(s) | 155 |
| BseGI | GGATG | 1 cut(s) | 205 |
| BseRI | GAGGAG | 1 cut(s) | 172 |
| BseXI | GCAGC | 1 cut(s) | 65 |
| BshFI | GGCC | 1 cut(s) | 125 |
| BsmAI | GTCTC | 1 cut(s) | 71 |
| BsnI | GGCC | 1 cut(s) | 125 |
| Bsp143I | GATC | 2 cut(s) | 202, 250 |
| BspANI | GGCC | 1 cut(s) | 125 |
| BssECI | CCNNGG | 1 cut(s) | 155 |
| BssMI | GATC | 2 cut(s) | 202, 250 |
| Bst2UI | CCWGG | 2 cut(s) | 58, 127 |
| BstDEI | CTNAG | 1 cut(s) | 173 |
| BstF5I | GGATG | 1 cut(s) | 205 |
| BstKTI | GATC | 2 cut(s) | 205, 253 |
| BstMAI | GTCTC | 1 cut(s) | 71 |
| BstMBI | GATC | 2 cut(s) | 202, 250 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 50 |
| BstNI | CCWGG | 2 cut(s) | 58, 127 |
| BstSCI | CCNGG | 2 cut(s) | 56, 125 |
| BstV1I | GCAGC | 1 cut(s) | 65 |
| BstV2I | GAAGAC | 1 cut(s) | 54 |
| BstX2I | RGATCY | 1 cut(s) | 250 |
| BstYI | RGATCY | 1 cut(s) | 250 |
| BsuRI | GGCC | 1 cut(s) | 125 |
| BtsCI | GGATG | 1 cut(s) | 205 |
| CviJI | RGCY | 5 cut(s) | 10, 44, 56, 125, 172 |
| CviKI_1 | RGCY | 5 cut(s) | 10, 44, 56, 125, 172 |
| DdeI | CTNAG | 1 cut(s) | 173 |
| DpnI | GATC | 2 cut(s) | 204, 252 |
| DpnII | GATC | 2 cut(s) | 202, 250 |
| Eco57I | CTGAAG | 1 cut(s) | 48 |
| EcoRII | CCWGG | 2 cut(s) | 56, 125 |
| FaiI | YATR | 4 cut(s) | 47, 122, 141, 231 |
| FbaI | TGATCA | 1 cut(s) | 202 |
| Fnu4HI | GCNGC | 1 cut(s) | 54 |
| FokI | GGATG | 1 cut(s) | 192 |
| Fsp4HI | GCNGC | 1 cut(s) | 54 |
| FspBI | CTAG | 2 cut(s) | 81, 254 |
| GluI | GCNGC | 1 cut(s) | 54 |
| GsuI | CTGGAG | 1 cut(s) | 107 |
| HaeIII | GGCC | 1 cut(s) | 125 |
| HinfI | GANTC | 1 cut(s) | 215 |
| HphI | GGTGA | 1 cut(s) | 122 |
| Hpy188I | TCNGA | 1 cut(s) | 67 |
| Hpy188III | TCNNGA | 4 cut(s) | 38, 86, 224, 254 |
| HpyAV | CCTTC | 2 cut(s) | 172, 232 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 50 |
| HpyF3I | CTNAG | 1 cut(s) | 173 |
| Ksp22I | TGATCA | 1 cut(s) | 202 |
| Kzo9I | GATC | 2 cut(s) | 202, 250 |
| LmnI | GCTCC | 1 cut(s) | 226 |
| LpnPI | CCDG | 8 cut(s) | 23, 43, 70, 71, 112, 139, 209, 222 |
| Lsp1109I | GCAGC | 1 cut(s) | 65 |
| MaeI | CTAG | 2 cut(s) | 81, 254 |
| MaeIII | GTNAC | 1 cut(s) | 96 |
| MalI | GATC | 2 cut(s) | 204, 252 |
| MboI | GATC | 2 cut(s) | 202, 250 |
| MboII | GAAGA | 2 cut(s) | 38, 54 |
| MflI | RGATCY | 1 cut(s) | 250 |
| MluCI | AATT | 1 cut(s) | 162 |
| MnlI | CCTC | 2 cut(s) | 34, 150 |
| MseI | TTAA | 2 cut(s) | 165, 243 |
| MspR9I | CCNGG | 2 cut(s) | 58, 127 |
| MvaI | CCWGG | 2 cut(s) | 58, 127 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 50 |
| NdeII | GATC | 2 cut(s) | 202, 250 |
| NmeAIII | GCCGAG | 1 cut(s) | 180 |
| PfeI | GAWTC | 1 cut(s) | 215 |
| PkrI | GCNGC | 1 cut(s) | 55 |
| Psp6I | CCWGG | 2 cut(s) | 56, 125 |
| PspGI | CCWGG | 2 cut(s) | 56, 125 |
| PsuI | RGATCY | 1 cut(s) | 250 |
| SaqAI | TTAA | 2 cut(s) | 165, 243 |
| SatI | GCNGC | 1 cut(s) | 54 |
| Sau3AI | GATC | 2 cut(s) | 202, 250 |
| ScrFI | CCNGG | 2 cut(s) | 58, 127 |
| SetI | ASST | 2 cut(s) | 174, 243 |
| SpeI | ACTAGT | 1 cut(s) | 80 |
| Sse9I | AATT | 1 cut(s) | 162 |
| SspMI | CTAG | 2 cut(s) | 81, 254 |
| StyD4I | CCNGG | 2 cut(s) | 56, 125 |
| TasI | AATT | 1 cut(s) | 162 |
| TfiI | GAWTC | 1 cut(s) | 215 |
| Tru1I | TTAA | 2 cut(s) | 165, 243 |
| Tru9I | TTAA | 2 cut(s) | 165, 243 |
| TseI | GCWGC | 1 cut(s) | 53 |
| XbaI | TCTAGA | 1 cut(s) | 253 |
| XspI | CTAG | 2 cut(s) | 81, 254 |