Rh5CG554500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006969
Physical Location & Seq
Reverse (-)
77210650 .. 77211219
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG554500.1

Sequence Viewer

Length: 570 bp
ATGGCTAGAAGAATAGGAGGTATATTGGGGTACTTTGTTGATCTGGACCCGAAGAAAAAAAGTGATTTTGTAGGTAGTCTGCCGCAAATTCGAGTGGGACTGGATGTAACCCAACCACTTCGAAGATGGGTCAAAATGGATTTAGGGTTTAGTGAGGAAACCAAATTGCAATTGGAATATGAAGAGCTACCCTACTTTTGTTTCTACTGTGGACGCCTCTCACATGTTAGCTCTAATTGTCCTTGGCATAAAGCAGGGAAGATCAAGGAGATGCAGTATGGAAGGTGGAAAACCCTTGCGAAGAATGTGTTTTGCATTGATCCGGACGGACAACTGAAGGGTAGGGCATTTGGGTTCGTCAGGGAGAAACCTCACTGGAAGGTGAAAGATCCGGAGCCGACCCTGATTGGATCTGTTCATTCATGTGATGAGTGGGGTGGAGAGATGGAGATTCAGGAAACTAGAATGGAAGTTGATGGGACGATGGTTACGATGGTTGTGATGCAGCCGGAAGCAAAGCGAAGGCGCTTTGGACACAAAAGTCCAAAGCGCGTGAGGGTGAGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

189

Amino Acids

21.99

Weight (kDa)

9.49

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 34 - 81 6.9e-12 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 540
AccII CGCG 1 cut(s) 552
AccIII TCCGGA 2 cut(s) 322, 391
AciI CCGC 1 cut(s) 83
AclWI GGATC 3 cut(s) 314, 383, 418
AcsI RAATTY 1 cut(s) 87
AcuI CTGAAG 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 223
AluBI AGCT 2 cut(s) 187, 231
AluI AGCT 2 cut(s) 187, 231
AlwI GGATC 3 cut(s) 314, 383, 418
Aor13HI TCCGGA 2 cut(s) 322, 391
ApeKI GCWGC 1 cut(s) 505
ApoI RAATTY 1 cut(s) 87
AspLEI GCGC 2 cut(s) 528, 552
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 394
AsuII TTCGAA 1 cut(s) 121
AvaII GGWCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 517
BccI CCATC 5 cut(s) 120, 439, 470, 478, 487
BfaI CTAG 2 cut(s) 6, 462
BfoI RGCGCY 1 cut(s) 529
BisI GCNGC 2 cut(s) 83, 506
BlsI GCNGC 2 cut(s) 84, 507
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 48, 396
BmsI GCATC 2 cut(s) 261, 492
Bpu14I TTCGAA 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 242
BsaWI WCCGGW 2 cut(s) 322, 391
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bse1I ACTGG 2 cut(s) 105, 380
BseAI TCCGGA 2 cut(s) 322, 391
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 109
BseNI ACTGG 2 cut(s) 105, 380
BseXI GCAGC 1 cut(s) 517
Bsh1236I CGCG 1 cut(s) 552
BsiSI CCGG 3 cut(s) 323, 392, 509
BslFI GGGAC 2 cut(s) 111, 493
BsmFI GGGAC 2 cut(s) 111, 493
Bsp119I TTCGAA 1 cut(s) 121
Bsp13I TCCGGA 2 cut(s) 322, 391
Bsp143I GATC 5 cut(s) 40, 261, 319, 388, 410
BspACI CCGC 1 cut(s) 83
BspEI TCCGGA 2 cut(s) 322, 391
BspFNI CGCG 1 cut(s) 552
BspLI GGNNCC 2 cut(s) 48, 396
BspPI GGATC 3 cut(s) 314, 383, 418
BspQI GCTCTTC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 121
BsrI ACTGG 2 cut(s) 105, 380
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 5 cut(s) 40, 261, 319, 388, 410
BssNI GRCGYC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 121
BstF5I GGATG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 552
BstH2I RGCGCY 1 cut(s) 529
BstHHI GCGC 2 cut(s) 528, 552
BstKTI GATC 5 cut(s) 43, 264, 322, 391, 413
BstMBI GATC 5 cut(s) 40, 261, 319, 388, 410
BstNSI RCATGY 1 cut(s) 227
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 1 cut(s) 517
BstX2I RGATCY 2 cut(s) 388, 410
BstYI RGATCY 2 cut(s) 388, 410
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 373
CfoI GCGC 2 cut(s) 528, 552
Cfr13I GGNCC 1 cut(s) 46
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 31
CviAII CATG 2 cut(s) 224, 423
CviJI RGCY 5 cut(s) 5, 187, 231, 397, 508
CviKI_1 RGCY 5 cut(s) 5, 187, 231, 397, 508
CviQI GTAC 1 cut(s) 31
DpnI GATC 5 cut(s) 42, 263, 321, 390, 412
DpnII GATC 5 cut(s) 40, 261, 319, 388, 410
DrdI GACNNNNNNGTC 1 cut(s) 540
DseDI GACNNNNNNGTC 1 cut(s) 540
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 227, 426
FaiI YATR 6 cut(s) 23, 180, 225, 249, 279, 424
FaqI GGGAC 2 cut(s) 111, 493
FatI CATG 2 cut(s) 223, 422
Fnu4HI GCNGC 2 cut(s) 83, 506
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 83, 506
FspBI CTAG 2 cut(s) 6, 462
GlaI GCGC 2 cut(s) 527, 551
GluI GCNGC 2 cut(s) 83, 506
HaeII RGCGCY 1 cut(s) 529
HapII CCGG 3 cut(s) 323, 392, 509
HgaI GACGC 1 cut(s) 222
HhaI GCGC 2 cut(s) 528, 552
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 2 cut(s) 227, 426
Hin6I GCGC 2 cut(s) 526, 550
HinP1I GCGC 2 cut(s) 526, 550
HinfI GANTC 1 cut(s) 451
HpaII CCGG 3 cut(s) 323, 392, 509
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 212
Hpy188III TCNNGA 4 cut(s) 44, 323, 392, 455
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 4 cut(s) 276, 331, 373, 516
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 4 cut(s) 169, 274, 315, 505
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 2 cut(s) 227, 426
HspAI GCGC 2 cut(s) 526, 550
Kpn2I TCCGGA 2 cut(s) 322, 391
Kzo9I GATC 5 cut(s) 40, 261, 319, 388, 410
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 2 cut(s) 261, 492
MaeI CTAG 2 cut(s) 6, 462
MaeIII GTNAC 2 cut(s) 106, 487
MalI GATC 5 cut(s) 42, 263, 321, 390, 412
MboI GATC 5 cut(s) 40, 261, 319, 388, 410
MboII GAAGA 6 cut(s) 21, 64, 135, 194, 271, 313
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 2 cut(s) 388, 410
MluCI AATT 4 cut(s) 87, 164, 170, 235
MnlI CCTC 6 cut(s) 11, 148, 227, 381, 549, 555
MroI TCCGGA 2 cut(s) 322, 391
MslI CAYNNNNRTG 1 cut(s) 423
MspI CCGG 3 cut(s) 323, 392, 509
MunI CAATTG 1 cut(s) 170
MvnI CGCG 1 cut(s) 552
NdeII GATC 5 cut(s) 40, 261, 319, 388, 410
NlaIII CATG 2 cut(s) 227, 426
NlaIV GGNNCC 2 cut(s) 48, 396
NspI RCATGY 1 cut(s) 227
NspV TTCGAA 1 cut(s) 121
PciI ACATGT 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 488
PfeI GAWTC 1 cut(s) 451
PkrI GCNGC 2 cut(s) 84, 507
PscI ACATGT 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 48, 396
PspPI GGNCC 1 cut(s) 46
PsuI RGATCY 2 cut(s) 388, 410
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 423
SapI GCTCTTC 1 cut(s) 177
SatI GCNGC 2 cut(s) 83, 506
Sau3AI GATC 5 cut(s) 40, 261, 319, 388, 410
Sau96I GGNCC 1 cut(s) 46
SetI ASST 7 cut(s) 22, 76, 189, 233, 287, 373, 384
SfaNI GCATC 2 cut(s) 261, 492
SfuI TTCGAA 1 cut(s) 121
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 423
Sse9I AATT 4 cut(s) 87, 164, 170, 235
SsiI CCGC 1 cut(s) 83
SspMI CTAG 2 cut(s) 6, 462
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 209
TaqI TCGA 2 cut(s) 91, 121
TasI AATT 4 cut(s) 87, 164, 170, 235
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 1 cut(s) 451
TscAI CASTG 1 cut(s) 380
TseI GCWGC 1 cut(s) 505
TspDTI ATGAA 3 cut(s) 195, 407, 411
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 87
XceI RCATGY 1 cut(s) 227
XcmI CCANNNNNNNNNTGG 2 cut(s) 123, 169
XspI CTAG 2 cut(s) 6, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.