RLG00000008746

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008183
Physical Location & Seq
Reverse (-)
36190347 .. 36192411
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008746

Sequence Viewer

Length: 690 bp
ATGAGTTTTGTTAAGCTGGAGGAAGTTGTTGTTATAATGCTAGAGATAGCTAGCATGAAGGAAGCAGTTGAGAGGATGAGTAGGTTGGTTGATGTACACATTGGGGAGAGAATTGAACATATTGTATCATTGGTGAAACGTGATGAAGGTGTAGAATCAACACAATTCAATCACGCAAGGGAACGCAAGGAAGGTTCAAGGAGTTACTCATTGAAGTTGTTGTATGTGAACAAAGGCGAATGTGGGGATGGGACAAGAAGGCAGCCGCATGATCTCTATAAGGAATGTAAGGGAGAGTCGCAGATTTCAAACCTATCAGCTGTATCAGTAAGTCTGCCAGGGCCTCCCAAGGCAGCGCATAGAAGGTATGGCTATGGTAGCCTAAATCGGAACAACCATGAAGCTTCTCTTGCATTAGACGGACTAGTTTGCAGCCACGGTGGCGCAACCAATTTTGAGGTGTTAACTGGGTATCTTAGATGGGAGGAGCGTATTAGAAGCAAATGCAGACTGAATAATTTGGCTCCTAGATTAAAGGAATGCACAAGGTTGGTCATGTTGGACATGGTTTTGAAGAAGGAAATTGTAGCAGCATGTATTCAGCATACACTGGTGTTCAAAGACTTTATAATTGTGGATCTCATTGCAAGTCCCACGCAGAAGGAGTTGCGGACTGTAGAGTTTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.94

Weight (kDa)

8.7

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 35, 629
AciI CCGC 2 cut(s) 266, 670
AclWI GGATC 1 cut(s) 645
AfaI GTAC 1 cut(s) 96
AgsI TTSAA 7 cut(s) 116, 169, 198, 214, 309, 574, 619
AhlI ACTAGT 1 cut(s) 424
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 4 cut(s) 16, 50, 320, 404
AluI AGCT 4 cut(s) 16, 50, 320, 404
AlwI GGATC 1 cut(s) 645
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 4 cut(s) 262, 353, 432, 590
AspLEI GCGC 2 cut(s) 358, 446
AspS9I GGNCC 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 145
AsuNHI GCTAGC 1 cut(s) 50
BbvI GCAGC 4 cut(s) 274, 365, 444, 602
BccI CCATC 2 cut(s) 242, 474
BciT130I CCWGG 1 cut(s) 339
BcuI ACTAGT 1 cut(s) 424
BfaI CTAG 4 cut(s) 41, 51, 425, 528
BfmI CTRYAG 1 cut(s) 675
BglI GCCNNNNNGGC 1 cut(s) 441
BisI GCNGC 5 cut(s) 263, 266, 354, 433, 591
BlsI GCNGC 5 cut(s) 264, 267, 355, 434, 592
Bme1390I CCNGG 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 525
BmrFI CCNGG 1 cut(s) 339
BmrI ACTGGG 1 cut(s) 477
BmtI GCTAGC 1 cut(s) 54
BmuI ACTGGG 1 cut(s) 477
BpmI CTGGAG 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 338, 348, 436
Bse1I ACTGG 2 cut(s) 472, 615
Bse3DI GCAATG 1 cut(s) 642
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 338, 348, 436
BseGI GGATG 2 cut(s) 81, 253
BseMI GCAATG 1 cut(s) 642
BseNI ACTGG 2 cut(s) 472, 615
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 4 cut(s) 274, 365, 444, 602
BshFI GGCC 1 cut(s) 343
BslFI GGGAC 2 cut(s) 265, 636
BsmFI GGGAC 2 cut(s) 265, 636
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 1 cut(s) 343
Bsp1407I TGTACA 1 cut(s) 94
Bsp143I GATC 2 cut(s) 271, 637
BspACI CCGC 2 cut(s) 266, 670
BspANI GGCC 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 525
BspOI GCTAGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 645
BsrDI GCAATG 1 cut(s) 642
BsrGI TGTACA 1 cut(s) 94
BsrI ACTGG 2 cut(s) 472, 615
BssECI CCNNGG 3 cut(s) 338, 348, 436
BssMI GATC 2 cut(s) 271, 637
BssT1I CCWWGG 1 cut(s) 348
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 440, 676
BstAUI TGTACA 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 476
BstDSI CCRYGG 1 cut(s) 436
BstF5I GGATG 2 cut(s) 81, 253
BstHHI GCGC 2 cut(s) 358, 446
BstKTI GATC 2 cut(s) 274, 640
BstMBI GATC 2 cut(s) 271, 637
BstMWI GCNNNNNNNGC 3 cut(s) 378, 410, 441
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 597
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 675
BstV1I GCAGC 4 cut(s) 274, 365, 444, 602
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 1 cut(s) 343
BtgI CCRYGG 1 cut(s) 436
BtsCI GGATG 2 cut(s) 81, 253
BtsIMutI CAGTG 1 cut(s) 608
Cac8I GCNNGC 1 cut(s) 52
CfoI GCGC 2 cut(s) 358, 446
Cfr13I GGNCC 1 cut(s) 341
Csp6I GTAC 1 cut(s) 95
CviAII CATG 6 cut(s) 55, 269, 398, 556, 565, 594
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 1 cut(s) 476
DpnI GATC 2 cut(s) 273, 639
DpnII GATC 2 cut(s) 271, 637
Eco130I CCWWGG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 6 cut(s) 58, 272, 401, 559, 568, 597
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 2 cut(s) 265, 636
FatI CATG 6 cut(s) 54, 268, 397, 555, 564, 593
Fnu4HI GCNGC 5 cut(s) 263, 266, 354, 433, 591
FokI GGATG 2 cut(s) 88, 260
Fsp4HI GCNGC 5 cut(s) 263, 266, 354, 433, 591
FspBI CTAG 4 cut(s) 41, 51, 425, 528
GlaI GCGC 2 cut(s) 357, 445
GluI GCNGC 5 cut(s) 263, 266, 354, 433, 591
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 343
HhaI GCGC 2 cut(s) 358, 446
Hin1II CATG 6 cut(s) 58, 272, 401, 559, 568, 597
Hin6I GCGC 2 cut(s) 356, 444
HinP1I GCGC 2 cut(s) 356, 444
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 2 cut(s) 155, 296
HpaI GTTAAC 1 cut(s) 465
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 4 cut(s) 97, 229, 465, 684
Hpy188I TCNGA 1 cut(s) 390
Hpy8I GTNNAC 4 cut(s) 97, 229, 465, 684
HpyAV CCTTC 7 cut(s) 52, 140, 185, 252, 357, 571, 655
HpyCH4III ACNGT 2 cut(s) 440, 676
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 5 cut(s) 413, 432, 507, 543, 647
HpyF10VI GCNNNNNNNGC 3 cut(s) 378, 410, 441
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 6 cut(s) 58, 272, 401, 559, 568, 597
HspAI GCGC 2 cut(s) 356, 444
KspAI GTTAAC 1 cut(s) 465
Kzo9I GATC 2 cut(s) 271, 637
LmnI GCTCC 2 cut(s) 487, 529
LpnPI CCDG 5 cut(s) 2, 324, 351, 453, 596
Lsp1109I GCAGC 4 cut(s) 274, 365, 444, 602
MaeI CTAG 4 cut(s) 41, 51, 425, 528
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 203
MalI GATC 2 cut(s) 273, 639
MboI GATC 2 cut(s) 271, 637
MboII GAAGA 1 cut(s) 586
MflI RGATCY 1 cut(s) 637
MluCI AATT 6 cut(s) 111, 164, 451, 517, 582, 630
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 5 cut(s) 13, 66, 354, 451, 478
MseI TTAA 3 cut(s) 12, 464, 533
MspA1I CMGCKG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 3 cut(s) 378, 410, 441
NdeII GATC 2 cut(s) 271, 637
NheI GCTAGC 1 cut(s) 50
NlaIII CATG 6 cut(s) 58, 272, 401, 559, 568, 597
NlaIV GGNNCC 1 cut(s) 525
NspI RCATGY 1 cut(s) 597
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 5 cut(s) 264, 267, 355, 434, 592
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PsiI TTATAA 2 cut(s) 35, 629
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 525
PspPI GGNCC 1 cut(s) 341
PsuI RGATCY 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SaqAI TTAA 3 cut(s) 12, 464, 533
SatI GCNGC 5 cut(s) 263, 266, 354, 433, 591
Sau3AI GATC 2 cut(s) 271, 637
Sau96I GGNCC 1 cut(s) 341
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 339
SfcI CTRYAG 1 cut(s) 675
SpeI ACTAGT 1 cut(s) 424
Sse9I AATT 6 cut(s) 111, 164, 451, 517, 582, 630
SsiI CCGC 2 cut(s) 266, 670
SspMI CTAG 4 cut(s) 41, 51, 425, 528
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 440, 676
TaiI ACGT 1 cut(s) 142
TasI AATT 6 cut(s) 111, 164, 451, 517, 582, 630
TatI WGTACW 1 cut(s) 94
TauI GCSGC 1 cut(s) 268
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 3 cut(s) 12, 464, 533
Tru9I TTAA 3 cut(s) 12, 464, 533
TscAI CASTG 1 cut(s) 615
TseI GCWGC 4 cut(s) 262, 353, 432, 590
TspDTI ATGAA 3 cut(s) 71, 159, 414
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 1 cut(s) 615
XceI RCATGY 1 cut(s) 597
XspI CTAG 4 cut(s) 41, 51, 425, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.