Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002051.1

Orthogroup ID

OG0008183

Physical Location & Seq

Genomic Coordinates Forward (+)

31268 .. 33965

Gene Structure 2698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002051.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

atggtggaggggttggatcctttaaatgaagttgttaacatacatggacaacagcatgtcatatcgacaaaggactttgatcggataatgggaatcaacgatggtggaagtgatatagagttgagtgggaagagtgatgaagatctcgtcaacaagttcaaactacatttggcggggggaggacatgctatcataatagcaacattgaaaggaaggaatgaagctgacaatttgttcttgaagggtttcatcctttatgtcatggcaacactgttgtgtccgataggaggcgaagaagtagagtctacattgttgtttactcttatggatacgtgctatataaattcccagaattgggtgacctatgcttatcagaagttgataatgggtgtgttgatgttcaaatcaggcaaagctgatgcattatccggatttatgttattcctacaagtgttctactttgatttagtgaacaaaatgtgcggatgggtggataagaatacaagaccattgtgtgaatggggagatgatcaggtatttaaactgttaaagtgggtggaggatcacgaagggtgggaaagacgcggggaggtgatggcagttgagaaggaagttgaacagctgaaaatgggttttgttaagttggaggaagctgttgttgttataatgccagagatagctaccatgaaggaagccgttgagaggatgagtaggttggtcggtgtgaacgatggggagagaattgaacacattggatcacaagtggtgagtcgactaaatgatggaggtggaaacaagtttgatgagggaaaaaacaaaaacagaaacatttcgacatcccagaaaagtgataaaggtgtagaatcaacacaattcgatcatggaagggaacacgaggaaggttcggggtgttactcattgaaggtccaatatgtgaataaaggcgaatgtggggatgggacaagaaggcggcagccgcatgatctctatacagaaggtaagggagagccgcaggtttcagaccgatcagagatggtaaccataaataggaagaaggaaggtgttttggcagggccgttcatggtaaatcgggatacatctgacatggttgtagaaatgttgaagtttgtgtttatgcaaaggccactaactgcgaagatggtacggtacgatactgcaactgttgcaaggtatggctatggtagcctagatcggcatgaccttgaagcttctcttacaccagacagtctagtttgcagccacgttataaacatgtttgctacgtacctgaatgagccacaaggccatgtttggttcttccatacatacttcggggtatacgactttgtcccatatattgaggatatgctagcacatgaatttccaccgccccagctgaatagatatgcaatcataactgtcaaagttttggtcatgttggacgcagtttttaagaatgaaattatagcaataggtattcagcgtgcactggtattcaaagactttacaatgatggatcgggttgcaagtctcaggcaggagggagttgtggactgtgggggtttatctaatccggaatatgcagaactatggtcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

532

Amino Acids

60.11

Weight (kDa)

5.23

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008183)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008746
rosa_multiflora	Rmu_sc0000317.1_g000007 Rmu_sc0000894.1_g000063 Rmu_sc0002051.1_g000006 Rmu_sc0032513.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350860
rosa_samantha	Rh2AG311500 Rh2AG311600 Rh2AG311700 Rh2BG319800 Rh2BG319900 Rh2BG394500 Rh2CG298700 Rh2DG336000 Rh3BG265100 Rh4BG133100 Rh4BG133200 Rh4BG146300 Rh4BG146400 Rh4CG143900 Rh4CG144000 Rh6DG199500
rosa_wichuraiana	Rw0G013210 Rw2G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	665, 1268
Acc36I	ACCTGC	1 cut(s)	1003
AccI	GTMKAC	3 cut(s)	305, 772, 1338
AccII	CGCG	1 cut(s)	585
AccIII	TCCGGA	2 cut(s)	428, 1573
AciI	CCGC	7 cut(s)	173, 483, 585, 970, 977, 1010, 1388
AclWI	GGATC	5 cut(s)	11, 24, 570, 763, 1524
AcsI	RAATTY	2 cut(s)	343, 1379
AfaI	GTAC	3 cut(s)	1164, 1169, 1286
AfiI	CCNNNNNNNGG	5 cut(s)	287, 354, 355, 702, 1047
AflIII	ACRYGT	1 cut(s)	1272
AleI	CACNNNNGTG	1 cut(s)	274
AluBI	AGCT	7 cut(s)	224, 416, 622, 653, 680, 1229, 1396
AluI	AGCT	7 cut(s)	224, 416, 622, 653, 680, 1229, 1396
Alw21I	GWGCWC	1 cut(s)	1489
Alw26I	GTCTC	1 cut(s)	1535
Alw44I	GTGCAC	1 cut(s)	1485
AlwI	GGATC	5 cut(s)	11, 24, 570, 763, 1524
Aor13HI	TCCGGA	2 cut(s)	428, 1573
AoxI	GGCC	3 cut(s)	1073, 1142, 1303
ApaLI	GTGCAC	1 cut(s)	1485
ApeKI	GCWGC	2 cut(s)	973, 1257
ApoI	RAATTY	2 cut(s)	343, 1379
ArsI	GACNNNNNNTTYG	2 cut(s)	1416, 1448
Asp700I	GAANNNNTTC	2 cut(s)	245, 829
AspS9I	GGNCC	2 cut(s)	925, 1073
AsuHPI	GGTGA	3 cut(s)	370, 604, 778
AsuNHI	GCTAGC	1 cut(s)	1369
AvaII	GGWCC	1 cut(s)	925
BaeGI	GKGCMC	1 cut(s)	1489
BamHI	GGATCC	1 cut(s)	16
BauI	CACGAG	1 cut(s)	893
Bbv12I	GWGCWC	1 cut(s)	1489
BbvI	GCAGC	2 cut(s)	985, 1269
BccI	CCATC	9 cut(s)	95, 480, 589, 725, 776, 950, 1027, 1153, 1507
BceAI	ACGGC	2 cut(s)	680, 1060
BciVI	GTATCC	2 cut(s)	322, 1087
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	1535
BfaI	CTAG	3 cut(s)	1208, 1250, 1370
BfuAI	ACCTGC	1 cut(s)	1003
BfuI	GTATCC	2 cut(s)	322, 1087
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	5 cut(s)	971, 974, 977, 1010, 1258
BlsI	GCNGC	5 cut(s)	972, 975, 978, 1011, 1259
Bme18I	GGWCC	1 cut(s)	925
BmgT120I	GGNCC	2 cut(s)	925, 1073
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	1 cut(s)	409
BmtI	GCTAGC	1 cut(s)	1373
BsaAI	YACGTR	2 cut(s)	333, 1284
BsaBI	GATNNNNATC	1 cut(s)	141
BsaWI	WCCGGW	2 cut(s)	428, 1573
Bsc4I	CCNNNNNNNGG	5 cut(s)	287, 354, 355, 702, 1047
Bse1I	ACTGG	1 cut(s)	1494
Bse8I	GATNNNNATC	1 cut(s)	141
BseAI	TCCGGA	2 cut(s)	428, 1573
BseGI	GGATG	5 cut(s)	249, 491, 711, 836, 961
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	5 cut(s)	287, 354, 355, 702, 1047
BseMII	CTCAG	1 cut(s)	1546
BseNI	ACTGG	1 cut(s)	1494
BseSI	GKGCMC	1 cut(s)	1489
BseXI	GCAGC	2 cut(s)	985, 1269
BseYI	CCCAGC	1 cut(s)	1392
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	3 cut(s)	1075, 1144, 1305
BsiHKAI	GWGCWC	1 cut(s)	1489
BsiSI	CCGG	2 cut(s)	429, 1574
BslFI	GGGAC	2 cut(s)	973, 1334
BslI	CCNNNNNNNGG	5 cut(s)	287, 354, 355, 702, 1047
BsmAI	GTCTC	1 cut(s)	1535
BsmFI	GGGAC	2 cut(s)	973, 1334
BsnI	GGCC	3 cut(s)	1075, 1144, 1305
Bsp1286I	GDGCHC	1 cut(s)	1489
Bsp13I	TCCGGA	2 cut(s)	428, 1573
BspACI	CCGC	7 cut(s)	173, 483, 585, 970, 977, 1010, 1388
BspANI	GGCC	3 cut(s)	1075, 1144, 1305
BspCNI	CTCAG	1 cut(s)	1545
BspEI	TCCGGA	2 cut(s)	428, 1573
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	1003
BspOI	GCTAGC	1 cut(s)	1373
BspPI	GGATC	5 cut(s)	11, 24, 570, 763, 1524
BsrI	ACTGG	1 cut(s)	1494
BssNAI	GTATAC	1 cut(s)	1339
BssSI	CACGAG	1 cut(s)	893
Bst1107I	GTATAC	1 cut(s)	1339
Bst2BI	CACGAG	1 cut(s)	893
Bst4CI	ACNGT	7 cut(s)	273, 546, 1167, 1183, 1247, 1420, 1556
Bst6I	CTCTTC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	1184
BstBAI	YACGTR	2 cut(s)	333, 1284
BstC8I	GCNNGC	2 cut(s)	1371, 1485
BstDEI	CTNAG	1 cut(s)	1532
BstEII	GGTNACC	2 cut(s)	358, 1036
BstF5I	GGATG	5 cut(s)	249, 491, 711, 836, 961
BstFNI	CGCG	1 cut(s)	585
BstMAI	GTCTC	1 cut(s)	1535
BstMWI	GCNNNNNNNGC	3 cut(s)	976, 1184, 1203
BstNSI	RCATGY	3 cut(s)	59, 188, 1276
BstPI	GGTNACC	2 cut(s)	358, 1036
BstSLI	GKGCMC	1 cut(s)	1489
BstSNI	TACGTA	1 cut(s)	1284
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	985, 1269
BstX2I	RGATCY	2 cut(s)	16, 142
BstYI	RGATCY	2 cut(s)	16, 142
BstZ17I	GTATAC	1 cut(s)	1339
BsuI	GTATCC	2 cut(s)	322, 1087
BsuRI	GGCC	3 cut(s)	1075, 1144, 1305
BtsCI	GGATG	5 cut(s)	249, 491, 711, 836, 961
BtsIMutI	CAGTG	2 cut(s)	269, 1487
BveI	ACCTGC	1 cut(s)	1003
Cac8I	GCNNGC	2 cut(s)	1371, 1485
Cfr13I	GGNCC	2 cut(s)	925, 1073
CseI	GACGC	2 cut(s)	591, 1451
Csp6I	GTAC	3 cut(s)	1163, 1168, 1285
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviQI	GTAC	3 cut(s)	1163, 1168, 1285
DdeI	CTNAG	1 cut(s)	1532
DraI	TTTAAA	2 cut(s)	24, 541
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco105I	TACGTA	1 cut(s)	1284
Eco47I	GGWCC	1 cut(s)	925
Eco91I	GGTNACC	2 cut(s)	358, 1036
EcoO65I	GGTNACC	2 cut(s)	358, 1036
EcoT22I	ATGCAT	1 cut(s)	424
FalI	AAGNNNNNCTT	2 cut(s)	1218, 1250
FaqI	GGGAC	2 cut(s)	973, 1334
FauI	CCCGC	2 cut(s)	166, 578
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	3 cut(s)	305, 772, 1338
Fnu4HI	GCNGC	5 cut(s)	971, 974, 977, 1010, 1258
FokI	GGATG	5 cut(s)	236, 498, 718, 823, 968
Fsp4HI	GCNGC	5 cut(s)	971, 974, 977, 1010, 1258
FspBI	CTAG	3 cut(s)	1208, 1250, 1370
GluI	GCNGC	5 cut(s)	971, 974, 977, 1010, 1258
GsaI	CCCAGC	1 cut(s)	1396
HaeIII	GGCC	3 cut(s)	1075, 1144, 1305
HapII	CCGG	2 cut(s)	429, 1574
HgaI	GACGC	2 cut(s)	591, 1451
HincII	GTYRAC	3 cut(s)	37, 151, 773
HindII	GTYRAC	3 cut(s)	37, 151, 773
HindIII	AAGCTT	1 cut(s)	1227
HinfI	GANTC	4 cut(s)	93, 302, 769, 863
HpaI	GTTAAC	1 cut(s)	37
HpaII	CCGG	2 cut(s)	429, 1574
HphI	GGTGA	3 cut(s)	370, 604, 778
Hpy188I	TCNGA	6 cut(s)	84, 282, 375, 1021, 1030, 1102
Hpy188III	TCNNGA	6 cut(s)	238, 429, 566, 1091, 1574, 1596
HpyCH4III	ACNGT	7 cut(s)	273, 546, 1167, 1183, 1247, 1420, 1556
HpyCH4IV	ACGT	3 cut(s)	332, 1263, 1283
HpyCH4V	TGCA	9 cut(s)	422, 1138, 1178, 1187, 1257, 1409, 1487, 1526, 1583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	976, 1184, 1203
HpyF3I	CTNAG	1 cut(s)	1532
HpySE526I	ACGT	3 cut(s)	332, 1263, 1283
Kpn2I	TCCGGA	2 cut(s)	428, 1573
Ksp22I	TGATCA	1 cut(s)	529
KspAI	GTTAAC	1 cut(s)	37
Lsp1109I	GCAGC	2 cut(s)	985, 1269
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	3 cut(s)	1208, 1250, 1370
MaeII	ACGT	3 cut(s)	332, 1263, 1283
MaeIII	GTNAC	3 cut(s)	358, 911, 1036
MboII	GAAGA	6 cut(s)	142, 152, 305, 1063, 1168, 1309
MflI	RGATCY	2 cut(s)	16, 142
MhlI	GDGCHC	1 cut(s)	1489
MluCI	AATT	7 cut(s)	229, 343, 352, 741, 872, 1379, 1461
MlyI	GAGTC	2 cut(s)	311, 778
MmeI	TCCRAC	2 cut(s)	624, 1419
Mph1103I	ATGCAT	1 cut(s)	424
MroI	TCCGGA	2 cut(s)	428, 1573
MroXI	GAANNNNTTC	2 cut(s)	245, 829
MseI	TTAA	6 cut(s)	23, 36, 540, 548, 639, 1452
MslI	CAYNNNNRTG	1 cut(s)	274
MspA1I	CMGCKG	2 cut(s)	622, 1396
MspI	CCGG	2 cut(s)	429, 1574
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	3 cut(s)	976, 1184, 1203
NheI	GCTAGC	1 cut(s)	1369
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	3 cut(s)	59, 188, 1276
OliI	CACNNNNGTG	1 cut(s)	274
PciI	ACATGT	1 cut(s)	1272
PcsI	WCGNNNNNNNCGW	2 cut(s)	726, 1338
PdmI	GAANNNNTTC	2 cut(s)	245, 829
PfeI	GAWTC	2 cut(s)	93, 863
PflFI	GACNNNGTC	1 cut(s)	1346
PkrI	GCNGC	5 cut(s)	972, 975, 978, 1011, 1259
PleI	GAGTC	2 cut(s)	310, 777
PpsI	GAGTC	2 cut(s)	310, 777
Ppu21I	YACGTR	2 cut(s)	333, 1284
PscI	ACATGT	1 cut(s)	1272
PsiI	TTATAA	2 cut(s)	665, 1268
PspEI	GGTNACC	2 cut(s)	358, 1036
PspFI	CCCAGC	1 cut(s)	1392
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	2 cut(s)	925, 1073
PsuI	RGATCY	2 cut(s)	16, 142
PsyI	GACNNNGTC	1 cut(s)	1346
PvuII	CAGCTG	2 cut(s)	622, 1396
RsaI	GTAC	3 cut(s)	1164, 1169, 1286
RsaNI	GTAC	3 cut(s)	1163, 1168, 1285
RseI	CAYNNNNRTG	1 cut(s)	274
SalI	GTCGAC	1 cut(s)	771
SaqAI	TTAA	6 cut(s)	23, 36, 540, 548, 639, 1452
SatI	GCNGC	5 cut(s)	971, 974, 977, 1010, 1258
Sau96I	GGNCC	2 cut(s)	925, 1073
SchI	GAGTC	2 cut(s)	311, 778
SduI	GDGCHC	1 cut(s)	1489
SfaNI	GCATC	1 cut(s)	409
SinI	GGWCC	1 cut(s)	925
SmiMI	CAYNNNNRTG	1 cut(s)	274
SnaBI	TACGTA	1 cut(s)	1284
Sse9I	AATT	7 cut(s)	229, 343, 352, 741, 872, 1379, 1461
SsiI	CCGC	7 cut(s)	173, 483, 585, 970, 977, 1010, 1388
SspMI	CTAG	3 cut(s)	1208, 1250, 1370
TaaI	ACNGT	7 cut(s)	273, 546, 1167, 1183, 1247, 1420, 1556
TaiI	ACGT	3 cut(s)	335, 1266, 1286
TaqI	TCGA	4 cut(s)	65, 772, 833, 876
TaqII	GACCGA	1 cut(s)	1038
TasI	AATT	7 cut(s)	229, 343, 352, 741, 872, 1379, 1461
TauI	GCSGC	3 cut(s)	973, 979, 1012
TfiI	GAWTC	2 cut(s)	93, 863
Tru1I	TTAA	6 cut(s)	23, 36, 540, 548, 639, 1452
Tru9I	TTAA	6 cut(s)	23, 36, 540, 548, 639, 1452
TscAI	CASTG	2 cut(s)	276, 1494
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	973, 1257
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	8 cut(s)	42, 153, 234, 238, 701, 1069, 1392, 1473
TspRI	CASTG	2 cut(s)	276, 1494
Tth111I	GACNNNGTC	1 cut(s)	1346
VneI	GTGCAC	1 cut(s)	1485
VpaK11BI	GGWCC	1 cut(s)	925
XapI	RAATTY	2 cut(s)	343, 1379
XceI	RCATGY	3 cut(s)	59, 188, 1276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	516
XmiI	GTMKAC	3 cut(s)	305, 772, 1338
XmnI	GAANNNNTTC	2 cut(s)	245, 829
XspI	CTAG	3 cut(s)	1208, 1250, 1370
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.