Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032513.1

Orthogroup ID

OG0008183

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1309

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032513.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggtggaggggttggatcctttaaatgaagttgttaacatacatggacaacagcatgtcatatcgacaaaggactttgatcggataatgggaatcaacgatggtggaagtgatatagagttgagtgggaagagtgatgaagatctcgtcaacaagttcaaactacatttggcggggggaggacatgctatcataatagcaacattgaaaggaaggaatgaagctgacaatttgttcttgaagggtttcatcctttatgtcatggcaacactgttgtgtccgataggaggcgaagaagtagagtctacattgttgtttactcttatggatacgtgctatataaattcccagaattggatgacctatgcttatcagaagttgataatgggtgtgttgatgttcaaatcaggcaaagctgatgcattatccggatttatgttattcctacaagtgttctactttgatttagtgaacaaaatgtgcggatgggtggataagagtacaagaccattgtgtgaatggggagatgatcaagtatcaaggagaacgatacatgaagcgattgttgcaaaaagggaagggaccgataagtgggatagagacagagaggcgatggcagttgagaaggaaggtgaacagctgaaaatgagttttgataagctggaggaagttgttgttataatgccagagatagctaccatgaaggaagccgttgagaggatgagtaggttggtcggtgtgaacgatggggagagaattgaacacattggatcacaagtggtgagtcgactaaatgatggaggtggaaacaagtttgatgagggaaaaaacaaaaacagaaacatttcgacatcccagaaaagtgataaaggtgtagaatcaacacaattcgatcatggaagggaacacgaggaaggttcggggtgttactcattgaaggtccaatatgtgaataaaggcgaatgtggagatgggacaagaaggcggcagccgcgtgatctctatacagaaggtaagggagagccgcaggtttcagaccgatcagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

349

Amino Acids

39.15

Weight (kDa)

5.23

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008183)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008746
rosa_multiflora	Rmu_sc0000317.1_g000007 Rmu_sc0000894.1_g000063 Rmu_sc0002051.1_g000006 Rmu_sc0032513.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350860
rosa_samantha	Rh2AG311500 Rh2AG311600 Rh2AG311700 Rh2BG319800 Rh2BG319900 Rh2BG394500 Rh2CG298700 Rh2DG336000 Rh3BG265100 Rh4BG133100 Rh4BG133200 Rh4BG146300 Rh4BG146400 Rh4CG143900 Rh4CG144000 Rh6DG199500
rosa_wichuraiana	Rw0G013210 Rw2G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	1018
AccI	GTMKAC	2 cut(s)	305, 787
AccII	CGCG	1 cut(s)	994
AccIII	TCCGGA	1 cut(s)	428
AciI	CCGC	5 cut(s)	173, 483, 985, 992, 1025
AclWI	GGATC	3 cut(s)	11, 24, 778
AcsI	RAATTY	1 cut(s)	343
AfaI	GTAC	1 cut(s)	502
AfiI	CCNNNNNNNGG	4 cut(s)	287, 354, 591, 717
AgsI	TTSAA	6 cut(s)	160, 208, 241, 403, 761, 937
AleI	CACNNNNGTG	1 cut(s)	274
AluBI	AGCT	5 cut(s)	224, 416, 640, 661, 695
AluI	AGCT	5 cut(s)	224, 416, 640, 661, 695
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	3 cut(s)	11, 24, 778
Aor13HI	TCCGGA	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	988
ApoI	RAATTY	1 cut(s)	343
Asp700I	GAANNNNTTC	2 cut(s)	245, 844
AspS9I	GGNCC	2 cut(s)	582, 940
AsuHPI	GGTGA	2 cut(s)	644, 793
AvaII	GGWCC	2 cut(s)	582, 940
BamHI	GGATCC	1 cut(s)	16
BauI	CACGAG	1 cut(s)	908
BbvI	GCAGC	1 cut(s)	1000
BccI	CCATC	6 cut(s)	95, 480, 607, 740, 791, 965
BceAI	ACGGC	1 cut(s)	695
BciVI	GTATCC	1 cut(s)	322
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	594
BfuAI	ACCTGC	1 cut(s)	1018
BfuI	GTATCC	1 cut(s)	322
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	4 cut(s)	986, 989, 992, 1025
BlsI	GCNGC	4 cut(s)	987, 990, 993, 1026
Bme18I	GGWCC	2 cut(s)	582, 940
BmgT120I	GGNCC	2 cut(s)	582, 940
BmiI	GGNNCC	2 cut(s)	18, 583
BmsI	GCATC	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	683
BsaAI	YACGTR	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	4 cut(s)	287, 354, 591, 717
Bse8I	GATNNNNATC	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	428
BseGI	GGATG	5 cut(s)	249, 363, 491, 726, 851
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	4 cut(s)	287, 354, 591, 717
BseXI	GCAGC	1 cut(s)	1000
Bsh1236I	CGCG	1 cut(s)	994
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	2 cut(s)	595, 988
BslI	CCNNNNNNNGG	4 cut(s)	287, 354, 591, 717
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	2 cut(s)	595, 988
Bsp13I	TCCGGA	1 cut(s)	428
Bsp143I	GATC	8 cut(s)	16, 79, 142, 529, 770, 892, 997, 1040
BspACI	CCGC	5 cut(s)	173, 483, 985, 992, 1025
BspEI	TCCGGA	1 cut(s)	428
BspFNI	CGCG	1 cut(s)	994
BspLI	GGNNCC	2 cut(s)	18, 583
BspMI	ACCTGC	1 cut(s)	1018
BspPI	GGATC	3 cut(s)	11, 24, 778
BssMI	GATC	8 cut(s)	16, 79, 142, 529, 770, 892, 997, 1040
BssSI	CACGAG	1 cut(s)	908
Bst2BI	CACGAG	1 cut(s)	908
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	333
BstF5I	GGATG	5 cut(s)	249, 363, 491, 726, 851
BstFNI	CGCG	1 cut(s)	994
BstKTI	GATC	8 cut(s)	19, 82, 145, 532, 773, 895, 1000, 1043
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	8 cut(s)	16, 79, 142, 529, 770, 892, 997, 1040
BstMWI	GCNNNNNNNGC	2 cut(s)	566, 991
BstNSI	RCATGY	2 cut(s)	59, 188
BstUI	CGCG	1 cut(s)	994
BstV1I	GCAGC	1 cut(s)	1000
BstX2I	RGATCY	2 cut(s)	16, 142
BstYI	RGATCY	2 cut(s)	16, 142
BsuI	GTATCC	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	626
BtsCI	GGATG	5 cut(s)	249, 363, 491, 726, 851
BtsIMutI	CAGTG	1 cut(s)	269
BveI	ACCTGC	1 cut(s)	1018
Cfr13I	GGNCC	2 cut(s)	582, 940
Csp6I	GTAC	1 cut(s)	501
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	7 cut(s)	44, 56, 185, 262, 554, 700, 896
CviJI	RGCY	8 cut(s)	224, 416, 640, 661, 695, 710, 991, 1024
CviKI_1	RGCY	8 cut(s)	224, 416, 640, 661, 695, 710, 991, 1024
CviQI	GTAC	1 cut(s)	501
DpnI	GATC	8 cut(s)	18, 81, 144, 531, 772, 894, 999, 1042
DpnII	GATC	8 cut(s)	16, 79, 142, 529, 770, 892, 997, 1040
DraI	TTTAAA	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	582, 940
EcoT22I	ATGCAT	1 cut(s)	424
FaeI	CATG	7 cut(s)	47, 59, 188, 265, 557, 703, 899
FaqI	GGGAC	2 cut(s)	595, 988
FatI	CATG	7 cut(s)	43, 55, 184, 261, 553, 699, 895
FauI	CCCGC	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	2 cut(s)	305, 787
Fnu4HI	GCNGC	4 cut(s)	986, 989, 992, 1025
FokI	GGATG	5 cut(s)	236, 370, 498, 733, 838
Fsp4HI	GCNGC	4 cut(s)	986, 989, 992, 1025
GluI	GCNGC	4 cut(s)	986, 989, 992, 1025
GsuI	CTGGAG	1 cut(s)	683
HapII	CCGG	1 cut(s)	429
Hin1II	CATG	7 cut(s)	47, 59, 188, 265, 557, 703, 899
HincII	GTYRAC	3 cut(s)	37, 151, 788
HindII	GTYRAC	3 cut(s)	37, 151, 788
HinfI	GANTC	4 cut(s)	93, 302, 784, 878
HpaI	GTTAAC	1 cut(s)	37
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	2 cut(s)	644, 793
Hpy166II	GTNNAC	8 cut(s)	37, 151, 306, 318, 472, 635, 742, 788
Hpy188I	TCNGA	5 cut(s)	84, 282, 375, 1036, 1045
Hpy188III	TCNNGA	2 cut(s)	238, 429
Hpy8I	GTNNAC	8 cut(s)	37, 151, 306, 318, 472, 635, 742, 788
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	2 cut(s)	422, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	566, 991
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	7 cut(s)	47, 59, 188, 265, 557, 703, 899
Kpn2I	TCCGGA	1 cut(s)	428
Ksp22I	TGATCA	1 cut(s)	529
KspAI	GTTAAC	1 cut(s)	37
Kzo9I	GATC	8 cut(s)	16, 79, 142, 529, 770, 892, 997, 1040
LpnPI	CCDG	7 cut(s)	362, 393, 442, 647, 699, 869, 1013
Lsp1109I	GCAGC	1 cut(s)	1000
LweI	GCATC	1 cut(s)	409
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	926
MalI	GATC	8 cut(s)	18, 81, 144, 531, 772, 894, 999, 1042
MboI	GATC	8 cut(s)	16, 79, 142, 529, 770, 892, 997, 1040
MboII	GAAGA	3 cut(s)	142, 152, 305
MflI	RGATCY	2 cut(s)	16, 142
MluCI	AATT	5 cut(s)	229, 343, 352, 756, 887
MlyI	GAGTC	2 cut(s)	311, 793
MnlI	CCTC	8 cut(s)	173, 281, 601, 658, 711, 794, 814, 904
Mph1103I	ATGCAT	1 cut(s)	424
MroI	TCCGGA	1 cut(s)	428
MroXI	GAANNNNTTC	2 cut(s)	245, 844
MseI	TTAA	2 cut(s)	23, 36
MslI	CAYNNNNRTG	1 cut(s)	274
MspA1I	CMGCKG	1 cut(s)	640
MspI	CCGG	1 cut(s)	429
MvnI	CGCG	1 cut(s)	994
MwoI	GCNNNNNNNGC	2 cut(s)	566, 991
NdeII	GATC	8 cut(s)	16, 79, 142, 529, 770, 892, 997, 1040
NlaIII	CATG	7 cut(s)	47, 59, 188, 265, 557, 703, 899
NlaIV	GGNNCC	2 cut(s)	18, 583
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	2 cut(s)	59, 188
OliI	CACNNNNGTG	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PdmI	GAANNNNTTC	2 cut(s)	245, 844
PfeI	GAWTC	2 cut(s)	93, 878
PkrI	GCNGC	4 cut(s)	987, 990, 993, 1026
PleI	GAGTC	2 cut(s)	310, 792
PpsI	GAGTC	2 cut(s)	310, 792
Ppu21I	YACGTR	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	680
PspN4I	GGNNCC	2 cut(s)	18, 583
PspPI	GGNCC	2 cut(s)	582, 940
PsuI	RGATCY	2 cut(s)	16, 142
PvuII	CAGCTG	1 cut(s)	640
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
RseI	CAYNNNNRTG	1 cut(s)	274
SalI	GTCGAC	1 cut(s)	786
SaqAI	TTAA	2 cut(s)	23, 36
SatI	GCNGC	4 cut(s)	986, 989, 992, 1025
Sau3AI	GATC	8 cut(s)	16, 79, 142, 529, 770, 892, 997, 1040
Sau96I	GGNCC	2 cut(s)	582, 940
SchI	GAGTC	2 cut(s)	311, 793
SfaNI	GCATC	1 cut(s)	409
SinI	GGWCC	2 cut(s)	582, 940
SmiMI	CAYNNNNRTG	1 cut(s)	274
Sse9I	AATT	5 cut(s)	229, 343, 352, 756, 887
SsiI	CCGC	5 cut(s)	173, 483, 985, 992, 1025
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	4 cut(s)	65, 787, 848, 891
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	5 cut(s)	229, 343, 352, 756, 887
TatI	WGTACW	1 cut(s)	500
TauI	GCSGC	3 cut(s)	988, 994, 1027
TfiI	GAWTC	2 cut(s)	93, 878
Tru1I	TTAA	2 cut(s)	23, 36
Tru9I	TTAA	2 cut(s)	23, 36
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	1 cut(s)	988
TspDTI	ATGAA	6 cut(s)	42, 153, 234, 238, 570, 716
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	2 cut(s)	582, 940
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	2 cut(s)	59, 188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	516
XmiI	GTMKAC	2 cut(s)	305, 787
XmnI	GAANNNNTTC	2 cut(s)	245, 844
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.