Rh2CG298700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008183
Physical Location & Seq
Forward (+)
34643569 .. 34645526
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG298700.1

Sequence Viewer

Length: 660 bp
ATGGCAGTTAAGAAGGAAGTTGAACAGCTGAAAATGAGTTTTGATAAGCTGGAGAAAGCTGTTGTTGTTATAATGCCAGAGATAGCTACTATGAAGGAAGCCGTTGAGAGGATGAGTAGGTTGGTCGGTGTGAACGATGGGGAGAGAATTGAACACAATGTATCACAGGTGGTGAGTCAACTAAATGACGGAGGTGGAAACAAGTTTGATGAGGGAAAAAACAAAAATAGAAACATTTCAACATCACAGAAACGTGATAAAGGTGTAGAATCAACACAATTCGATCATGGAAGGGAACACGAGGAAGGTTCGGGGTGTTACTCATTGAAGGTCCAGTATGTGAATAAAGGCGAACGTGGGGATGGGACAAGAAAGCGGGGTGGCGCAACCAATTTCGAGGTGTCAACTGGGTACCTTGGATGTGATGAGCGTATTAGAAGCGTATGCAGACTGAATGATTTCGCTCCTAGATTGAAGAAATGCACAAGGTTGGTCATGTTGGACGCAGTTTTTAAGAATGAAATTATAGCAGCAGGTATTCAGCGTGCACTGGTATTCAAAGACTTTGCAATGGTGGATCCGGTTGCAAGTCTCAAGCAGGAGGGAGTTGTGGATTGTGGGGGTTTATCTAATCCGAAATATGCAGAACTATGGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.34

Weight (kDa)

8.53

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 524
Acc65I GGTACC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 411
AciI CCGC 1 cut(s) 376
AclWI GGATC 2 cut(s) 572, 585
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 6 cut(s) 23, 152, 240, 328, 475, 559
AluBI AGCT 4 cut(s) 28, 49, 59, 86
AluI AGCT 4 cut(s) 28, 49, 59, 86
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 1 cut(s) 596
Alw44I GTGCAC 1 cut(s) 546
AlwI GGATC 2 cut(s) 572, 585
ApaLI GTGCAC 1 cut(s) 546
ApeKI GCWGC 1 cut(s) 530
Asp700I GAANNNNTTC 2 cut(s) 235, 458
Asp718I GGTACC 1 cut(s) 411
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 331
BaeGI GKGCMC 1 cut(s) 550
BamHI GGATCC 1 cut(s) 577
BanI GGYRCC 1 cut(s) 411
BauI CACGAG 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 550
BbvI GCAGC 1 cut(s) 542
BccI CCATC 2 cut(s) 131, 356
BceAI ACGGC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 596
BfaI CTAG 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 524
BisI GCNGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 532
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 2 cut(s) 413, 579
BmrI ACTGGG 1 cut(s) 417
BmuI ACTGGG 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 415
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 3 cut(s) 334, 412, 555
Bse3DI GCAATG 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 3 cut(s) 117, 367, 425
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 576
BseNI ACTGG 3 cut(s) 334, 412, 555
BseSI GKGCMC 1 cut(s) 550
BseXI GCAGC 1 cut(s) 542
BshNI GGYRCC 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 550
BsiSI CCGG 1 cut(s) 581
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 596
BsmFI GGGAC 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 550
Bsp143I GATC 2 cut(s) 283, 577
BspACI CCGC 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 413, 579
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 2 cut(s) 572, 585
BspT107I GGYRCC 1 cut(s) 411
BsrDI GCAATG 1 cut(s) 576
BsrI ACTGG 3 cut(s) 334, 412, 555
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 2 cut(s) 283, 577
BssSI CACGAG 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 415
Bst2BI CACGAG 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 546
BstF5I GGATG 3 cut(s) 117, 367, 425
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 2 cut(s) 286, 580
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 2 cut(s) 283, 577
BstSLI GKGCMC 1 cut(s) 550
BstV1I GCAGC 1 cut(s) 542
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BtsCI GGATG 3 cut(s) 117, 367, 425
BtsIMutI CAGTG 1 cut(s) 548
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 1 cut(s) 546
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 331
CseI GACGC 1 cut(s) 512
Csp6I GTAC 1 cut(s) 412
CviAII CATG 2 cut(s) 287, 496
CviJI RGCY 5 cut(s) 28, 49, 59, 86, 101
CviKI_1 RGCY 5 cut(s) 28, 49, 59, 86, 101
CviQI GTAC 1 cut(s) 412
DpnI GATC 2 cut(s) 285, 579
DpnII GATC 2 cut(s) 283, 577
Eco130I CCWWGG 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 2 cut(s) 290, 499
FaiI YATR 9 cut(s) 71, 92, 288, 339, 445, 497, 527, 642, 652
FaqI GGGAC 1 cut(s) 379
FatI CATG 2 cut(s) 286, 495
FauI CCCGC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 531
FokI GGATG 3 cut(s) 124, 374, 432
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 1 cut(s) 468
GlaI GCGC 1 cut(s) 385
GluI GCNGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 71
HapII CCGG 1 cut(s) 581
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 386
Hin1II CATG 2 cut(s) 290, 499
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HincII GTYRAC 2 cut(s) 179, 405
HindII GTYRAC 2 cut(s) 179, 405
HinfI GANTC 2 cut(s) 175, 269
HpaII CCGG 1 cut(s) 581
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 4 cut(s) 133, 179, 405, 548
Hpy188I TCNGA 1 cut(s) 636
Hpy188III TCNNGA 1 cut(s) 657
Hpy8I GTNNAC 4 cut(s) 133, 179, 405, 548
HpyAV CCTTC 5 cut(s) 7, 88, 285, 299, 322
HpyCH4IV ACGT 2 cut(s) 253, 355
HpyCH4V TGCA 6 cut(s) 447, 483, 548, 569, 587, 644
HpySE526I ACGT 2 cut(s) 253, 355
Hsp92II CATG 2 cut(s) 290, 499
HspAI GCGC 1 cut(s) 384
KpnI GGTACC 1 cut(s) 415
Kzo9I GATC 2 cut(s) 283, 577
LmnI GCTCC 1 cut(s) 469
LpnPI CCDG 9 cut(s) 35, 90, 152, 347, 393, 519, 536, 584, 594
Lsp1109I GCAGC 1 cut(s) 542
MaeI CTAG 1 cut(s) 468
MaeII ACGT 2 cut(s) 253, 355
MaeIII GTNAC 1 cut(s) 317
MalI GATC 2 cut(s) 285, 579
MboI GATC 2 cut(s) 283, 577
MboII GAAGA 1 cut(s) 487
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 1 cut(s) 550
MluCI AATT 4 cut(s) 147, 278, 391, 522
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 6 cut(s) 102, 185, 205, 295, 391, 595
MroXI GAANNNNTTC 2 cut(s) 235, 458
MseI TTAA 2 cut(s) 9, 513
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 1 cut(s) 581
NdeII GATC 2 cut(s) 283, 577
NlaIII CATG 2 cut(s) 290, 499
NlaIV GGNNCC 2 cut(s) 413, 579
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdmI GAANNNNTTC 2 cut(s) 235, 458
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 532
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PsiI TTATAA 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 413, 579
PspPI GGNCC 1 cut(s) 331
PsuI RGATCY 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SaqAI TTAA 2 cut(s) 9, 513
SatI GCNGC 1 cut(s) 531
Sau3AI GATC 2 cut(s) 283, 577
Sau96I GGNCC 1 cut(s) 331
SchI GAGTC 1 cut(s) 184
SduI GDGCHC 1 cut(s) 550
SinI GGWCC 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
Sse9I AATT 4 cut(s) 147, 278, 391, 522
SsiI CCGC 1 cut(s) 376
SspMI CTAG 1 cut(s) 468
StyI CCWWGG 1 cut(s) 415
TaiI ACGT 2 cut(s) 256, 358
TaqI TCGA 2 cut(s) 282, 396
TasI AATT 4 cut(s) 147, 278, 391, 522
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 9, 513
Tru9I TTAA 2 cut(s) 9, 513
TscAI CASTG 1 cut(s) 555
TseI GCWGC 1 cut(s) 530
TspDTI ATGAA 2 cut(s) 107, 534
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 1 cut(s) 555
VneI GTGCAC 1 cut(s) 546
VpaK11BI GGWCC 1 cut(s) 331
XmnI GAANNNNTTC 2 cut(s) 235, 458
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.