Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008183

Physical Location & Seq

Genomic Coordinates Forward (+)

39778002 .. 39778610

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG311600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTAAACCGGGATACATCTGACAGGGTTGTAGAAATGTTGAAGTTTGTGTTTATGCCGAGGCCACTAACTGCGAAGATGGCACGGTACGATACTGCAACTGTTGCAAGGTATGGCTATGGTAGCCTAGATCGGCACGACCTTGAAGCTTCTCTTGCACCAGACGGTCTTGTTTGCAGCCACGTTATAAACATGTTTACTACATACCTGAATGAGCCCCAAGGCCATGTTTGGTTCTTCCACACATACTTCGGGATAAATGACTTTGTCCCATATATTGAGTATATGCTAGCACATGAATTTACATGGCCCCGACTGAATAGATATGCAATCATAACTATTAAAGTTGCATTATTATCTGTATTATGGTGGAGCAACCAATTTCGAGGTGTCAACTGGGTACCTTGGATGGGAGGAGCGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.54

Weight (kDa)

6.96

Isoelectric Point (pI)

22.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008183)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008746
rosa_multiflora	Rmu_sc0000317.1_g000007 Rmu_sc0000894.1_g000063 Rmu_sc0002051.1_g000006 Rmu_sc0032513.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350860
rosa_samantha	Rh2AG311500 Rh2AG311600 Rh2AG311700 Rh2BG319800 Rh2BG319900 Rh2BG394500 Rh2CG298700 Rh2DG336000 Rh3BG265100 Rh4BG133100 Rh4BG133200 Rh4BG146300 Rh4BG146400 Rh4CG143900 Rh4CG144000 Rh6DG199500
rosa_wichuraiana	Rw0G013210 Rw2G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
Acc65I	GGTACC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	2 cut(s)	89, 402
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	43, 146
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
AoxI	GGCC	3 cut(s)	62, 223, 308
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	299
Asp718I	GGTACC	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	309
AsuC2I	CCSGG	1 cut(s)	11
AsuNHI	GCTAGC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	2 cut(s)	73, 403
BciVI	GTATCC	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	11
BfaI	CTAG	2 cut(s)	128, 290
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	311, 402
BmrFI	CCNGG	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	406
BmtI	GCTAGC	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	59, 220, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	401
BseDI	CCNNGG	3 cut(s)	59, 220, 404
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	189
BshFI	GGCC	3 cut(s)	64, 225, 310
BshNI	GGYRCC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	64, 225, 310
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	130
BspANI	GGCC	3 cut(s)	64, 225, 310
BspLI	GGNNCC	2 cut(s)	311, 402
BspOI	GCTAGC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	3 cut(s)	59, 220, 404
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	2 cut(s)	220, 404
Bst4CI	ACNGT	3 cut(s)	87, 103, 167
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	414
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 104, 123, 155
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	64, 225, 310
BtsCI	GGATG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	88, 401
CviAII	CATG	4 cut(s)	193, 227, 296, 306
CviJI	RGCY	8 cut(s)	64, 117, 126, 149, 180, 217, 225, 310
CviKI_1	RGCY	8 cut(s)	64, 117, 126, 149, 180, 217, 225, 310
CviQI	GTAC	2 cut(s)	88, 401
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	220, 404
Eco24I	GRGCYC	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	220, 404
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	2 cut(s)	220, 404
FaeI	CATG	4 cut(s)	196, 230, 299, 309
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	192, 226, 295, 305
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	421
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	2 cut(s)	128, 290
GluI	GCNGC	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	64, 225, 310
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	4 cut(s)	196, 230, 299, 309
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	147
HpaII	CCGG	1 cut(s)	10
Hpy166II	GTNNAC	3 cut(s)	7, 198, 394
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	3 cut(s)	7, 198, 394
HpyCH4III	ACNGT	3 cut(s)	87, 103, 167
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	6 cut(s)	98, 107, 158, 177, 329, 350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 104, 123, 155
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	196, 230, 299, 309
KpnI	GGTACC	1 cut(s)	404
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	372, 416
LpnPI	CCDG	5 cut(s)	10, 23, 174, 221, 382
Lsp1109I	GCAGC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	128, 290
MaeII	ACGT	1 cut(s)	183
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	88, 229
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	299, 380
MnlI	CCTC	3 cut(s)	54, 380, 407
MseI	TTAA	1 cut(s)	342
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	80, 104, 123, 155
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	1 cut(s)	130
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	4 cut(s)	196, 230, 299, 309
NlaIV	GGNNCC	2 cut(s)	311, 402
NmeAIII	GCCGAG	1 cut(s)	84
NspI	RCATGY	1 cut(s)	196
PciI	ACATGT	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	179
PscI	ACATGT	1 cut(s)	192
PsiI	TTATAA	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	311, 402
PspPI	GGNCC	1 cut(s)	309
PsyI	GACNNNGTC	1 cut(s)	266
RsaI	GTAC	2 cut(s)	89, 402
RsaNI	GTAC	2 cut(s)	88, 401
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	7 cut(s)	113, 144, 151, 186, 210, 391, 406
Sse9I	AATT	2 cut(s)	299, 380
SspMI	CTAG	2 cut(s)	128, 290
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	2 cut(s)	220, 404
TaaI	ACNGT	3 cut(s)	87, 103, 167
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	385
TasI	AATT	2 cut(s)	299, 380
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	1 cut(s)	312
Tth111I	GACNNNGTC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	196
XspI	CTAG	2 cut(s)	128, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.