Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008183

Physical Location & Seq

Genomic Coordinates Forward (+)

39779113 .. 39779548

Gene Structure 436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG311700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTTGGACGCGGTTTTTAAGAATGAAATTGTAGCAGCAGGTATTCAGCGTGCACTGGTATTCAAAGACTTTACAATGGTAAATCCGGTTGCAAGTCCCAGGCAGGAGGGAGTTGTGGACTGTAGGGTTTATCTAATCTGGAATATGCAAAACTATGGTCGTGAATGGGCAAAGAAGTATGTGTCGAAAGACCACAGAGCTTCTCTTGTTATTGAATGTATAGGGAACAACCAAAACGAGGTCGACAATTTGGAGGAAATGATGGTGGAATACTTGCACAATCTTGAGCAACTACCAATTCTGCAGTTAGACGAAAGTAATGAAGGAGTGGAGAAATTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

PTPA

Protein Analysis

114

Amino Acids

13.17

Weight (kDa)

4.74

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008183)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008746
rosa_multiflora	Rmu_sc0000317.1_g000007 Rmu_sc0000894.1_g000063 Rmu_sc0002051.1_g000006 Rmu_sc0032513.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350860
rosa_samantha	Rh2AG311500 Rh2AG311600 Rh2AG311700 Rh2BG319800 Rh2BG319900 Rh2BG394500 Rh2CG298700 Rh2DG336000 Rh3BG265100 Rh4BG133100 Rh4BG133200 Rh4BG146300 Rh4BG146400 Rh4CG143900 Rh4CG144000 Rh6DG199500
rosa_wichuraiana	Rw0G013210 Rw2G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	11
AciI	CCGC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	64, 215, 340
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw21I	GWGCWC	1 cut(s)	55
Alw44I	GTGCAC	1 cut(s)	51
ApaLI	GTGCAC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	35
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
BaeGI	GKGCMC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	100
BfmI	CTRYAG	2 cut(s)	121, 302
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	98
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	11
BspFNI	CGCG	1 cut(s)	11
BspMAI	CTGCAG	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	2 cut(s)	121, 302
BstSLI	GKGCMC	1 cut(s)	55
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	53
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	51
CseI	GACGC	1 cut(s)	17
CviJI	RGCY	1 cut(s)	200
CviKI_1	RGCY	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	98
FaiI	YATR	4 cut(s)	146, 156, 180, 221
FaqI	GGGAC	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	3 cut(s)	53, 118, 244
Hpy188III	TCNNGA	3 cut(s)	139, 161, 284
Hpy8I	GTNNAC	3 cut(s)	53, 118, 244
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	5 cut(s)	53, 92, 148, 277, 304
LpnPI	CCDG	7 cut(s)	24, 41, 85, 89, 99, 112, 124
Lsp1109I	GCAGC	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	5 cut(s)	27, 247, 297, 335, 340
MnlI	CCTC	3 cut(s)	100, 232, 247
MseI	TTAA	1 cut(s)	18
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	306
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	3 cut(s)	43, 202, 243
SfcI	CTRYAG	2 cut(s)	121, 302
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	5 cut(s)	27, 247, 297, 335, 340
SsiI	CCGC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	185, 243
TasI	AATT	5 cut(s)	27, 247, 297, 335, 340
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	39, 336
TspRI	CASTG	1 cut(s)	60
VneI	GTGCAC	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.