Rroxscaffold_5G00350860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008183
Physical Location & Seq
Forward (+)
25538724 .. 25540611
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350860.1

Sequence Viewer

Length: 555 bp
ATGATAGGCTCTTCGACATTGCACTTGAAAGCCTGCCAACTAACTGTGGAGGGGTTGGATCCGTTGAATGAAGTTGTTAATATACATCGACATCACCATGTCATCTCGACAAAGGACTTTGCTCGAATAATGAGAATCAACGATGCTGGCGGTGATATAGAGTTGAGTGGGAAGAGTGATGAAGATCTCATCAACAGGTTGAAACTATGTTTGGCGGGGGGAGGACATGCTATCACAATAGCAACATTGAGGGAGATTGTGGTTGAAAGGAAGGAAGTCGACAATTTGTTCGTGATGGGTTTCATCCTTTATGCCATGGCAACTCTGTTGTGTCCGATAGGAGGCGAAGAAATAGAGTCTGCATTGTCGTTTGCTCTTATGGATACGTACGATACTACTGTTGCAAGGTATGGCTATGGTAGCTTGCATCGGAACGACCTTGAAGCTTCTCTTGCACCGGACGGACTAGTTTGCAGCCACGTTATAAACATGTTTGCTACGTACCGAATGAGCCACACGGCCATGTTTGGTTCTTCCACACATATTTCGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

184

Amino Acids

20.08

Weight (kDa)

5.61

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AccI GTMKAC 1 cut(s) 279
AciI CCGC 2 cut(s) 150, 215
AclWI GGATC 2 cut(s) 53, 66
AcoI YGGCCR 1 cut(s) 519
AfaI GTAC 2 cut(s) 389, 503
AfiI CCNNNNNNNGG 1 cut(s) 341
AflIII ACRYGT 1 cut(s) 489
AgsI TTSAA 5 cut(s) 28, 67, 202, 266, 443
AhlI ACTAGT 1 cut(s) 466
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 2 cut(s) 423, 446
AluI AGCT 2 cut(s) 423, 446
AlwI GGATC 2 cut(s) 53, 66
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 1 cut(s) 474
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AsuHPI GGTGA 2 cut(s) 86, 164
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BamHI GGATCC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 486
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 534
BciVI GTATCC 1 cut(s) 376
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 1 cut(s) 467
BfuI GTATCC 1 cut(s) 376
BglII AGATCT 1 cut(s) 184
BisI GCNGC 1 cut(s) 475
BlsI GCNGC 1 cut(s) 476
BmiI GGNNCC 1 cut(s) 60
BmsI GCATC 2 cut(s) 133, 436
BsaAI YACGTR 2 cut(s) 387, 501
BsaBI GATNNNNATC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 17
Bse8I GATNNNNATC 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 303
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 486
BshFI GGCC 1 cut(s) 521
BsiSI CCGG 1 cut(s) 458
BsiWI CGTACG 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 341
BsnI GGCC 1 cut(s) 521
Bsp143I GATC 2 cut(s) 58, 184
Bsp19I CCATGG 1 cut(s) 315
BspACI CCGC 2 cut(s) 150, 215
BspANI GGCC 1 cut(s) 521
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 2 cut(s) 53, 66
BspQI GCTCTTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 2 cut(s) 58, 184
BssT1I CCWWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 46, 400
Bst6I CTCTTC 2 cut(s) 16, 167
BstBAI YACGTR 2 cut(s) 387, 501
BstC8I GCNNGC 3 cut(s) 34, 148, 425
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 2 cut(s) 61, 187
BstMBI GATC 2 cut(s) 58, 184
BstMWI GCNNNNNNNGC 2 cut(s) 420, 452
BstNSI RCATGY 2 cut(s) 230, 493
BstSNI TACGTA 2 cut(s) 387, 501
BstV1I GCAGC 1 cut(s) 486
BstX2I RGATCY 2 cut(s) 58, 184
BstYI RGATCY 2 cut(s) 58, 184
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 1 cut(s) 521
BtgI CCRYGG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 303
Cac8I GCNNGC 3 cut(s) 34, 148, 425
Csp6I GTAC 2 cut(s) 388, 502
CviAII CATG 5 cut(s) 98, 227, 316, 490, 523
CviJI RGCY 8 cut(s) 9, 32, 414, 423, 446, 477, 513, 521
CviKI_1 RGCY 8 cut(s) 9, 32, 414, 423, 446, 477, 513, 521
CviQI GTAC 2 cut(s) 388, 502
DpnI GATC 2 cut(s) 60, 186
DpnII GATC 2 cut(s) 58, 184
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 2 cut(s) 16, 167
EarI CTCTTC 2 cut(s) 16, 167
Eco105I TACGTA 2 cut(s) 387, 501
Eco130I CCWWGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 5 cut(s) 101, 230, 319, 493, 526
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FatI CATG 5 cut(s) 97, 226, 315, 489, 522
FauI CCCGC 1 cut(s) 208
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 475
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 475
FspBI CTAG 1 cut(s) 467
GluI GCNGC 1 cut(s) 475
HaeIII GGCC 1 cut(s) 521
HapII CCGG 1 cut(s) 458
Hin1II CATG 5 cut(s) 101, 230, 319, 493, 526
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 2 cut(s) 135, 356
HpaII CCGG 1 cut(s) 458
HphI GGTGA 2 cut(s) 86, 164
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 336, 432
Hpy188III TCNNGA 2 cut(s) 106, 292
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 46, 400
HpyCH4IV ACGT 3 cut(s) 386, 480, 500
HpyCH4V TGCA 6 cut(s) 22, 362, 404, 427, 455, 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 420, 452
HpySE526I ACGT 3 cut(s) 386, 480, 500
Hsp92II CATG 5 cut(s) 101, 230, 319, 493, 526
Kzo9I GATC 2 cut(s) 58, 184
LguI GCTCTTC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 46, 132, 181, 471
Lsp1109I GCAGC 1 cut(s) 486
LweI GCATC 2 cut(s) 133, 436
MaeI CTAG 1 cut(s) 467
MaeII ACGT 3 cut(s) 386, 480, 500
MalI GATC 2 cut(s) 60, 186
MboI GATC 2 cut(s) 58, 184
MboII GAAGA 5 cut(s) 3, 184, 194, 359, 525
MflI RGATCY 2 cut(s) 58, 184
MluCI AATT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 4 cut(s) 43, 215, 243, 335
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 2 cut(s) 96, 521
MspI CCGG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 420, 452
NcoI CCATGG 1 cut(s) 315
NdeII GATC 2 cut(s) 58, 184
NlaIII CATG 5 cut(s) 101, 230, 319, 493, 526
NlaIV GGNNCC 1 cut(s) 60
NspI RCATGY 2 cut(s) 230, 493
PciI ACATGT 1 cut(s) 489
PciSI GCTCTTC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 135
Pfl23II CGTACG 1 cut(s) 387
PkrI GCNGC 1 cut(s) 476
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Ppu21I YACGTR 2 cut(s) 387, 501
PscI ACATGT 1 cut(s) 489
PsiI TTATAA 1 cut(s) 485
PspLI CGTACG 1 cut(s) 387
PspN4I GGNNCC 1 cut(s) 60
PsuI RGATCY 2 cut(s) 58, 184
RsaI GTAC 2 cut(s) 389, 503
RsaNI GTAC 2 cut(s) 388, 502
RseI CAYNNNNRTG 2 cut(s) 96, 521
SalI GTCGAC 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 475
Sau3AI GATC 2 cut(s) 58, 184
SchI GAGTC 1 cut(s) 365
SetI ASST 8 cut(s) 200, 389, 410, 425, 441, 448, 483, 503
SfaNI GCATC 2 cut(s) 133, 436
SmiMI CAYNNNNRTG 2 cut(s) 96, 521
SnaBI TACGTA 2 cut(s) 387, 501
SpeI ACTAGT 1 cut(s) 466
Sse9I AATT 1 cut(s) 283
SsiI CCGC 2 cut(s) 150, 215
SspMI CTAG 1 cut(s) 467
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 2 cut(s) 46, 400
TaiI ACGT 3 cut(s) 389, 483, 503
TaqI TCGA 5 cut(s) 14, 88, 107, 124, 279
TasI AATT 1 cut(s) 283
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseI GCWGC 1 cut(s) 474
TspDTI ATGAA 3 cut(s) 84, 195, 292
TspGWI ACGGA 2 cut(s) 51, 477
XceI RCATGY 2 cut(s) 230, 493
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.