Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00592

Orthogroup ID

OG0008183

Physical Location & Seq

Genomic Coordinates Forward (+)

23285 .. 25667

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCAGTTGAGAAGGAAGTTGAACAGCTGAAAATGGGTTTTGTTAAGTTGGAGGAAGCTGTTGTTGTTATAATGCCAGAGATAGCTACCATGAAGGAAGCCGTTGAGAGGATGAGTAGGTTGGTTGGTGTGCACAATAGGGAGACAAGTGAACATATTGTATCACAGGTGGTGAGTCGACTAAATGATGAAGGTGGAAATAACTTTGATGAGGAAAAAAACAAAAACAAAAACATTTCGATCTCACAGAAATGTGAAAAAGGTGTAGACTCAACACAGTTTAATCATGGAATGGAACGCGAGGAAGGTTCGGAGAGTTACTCATTGAAGTTCTTATATGTGAACAAAGGCGAACGTCGGGATGGGACAAGAAGGTACGATACTGCTAATTTTGCAAGGTATGGCTATGGTAGCTTGCATCGGGACGACCTTAAAGCTTCTCTAGAACTAGATGGACTACTTTGCAGCCATGTTATAAACATGTTTGCTACGTACCAGAATGAGCCACACGACCATGTTTGGTACTTCCACACATACTTTGGGGGTAGTGCATCCAATTTCGAGGTGTCAACTGGGTACCTTGGAAGGGAGGAGCGTATGCAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

23.19

Weight (kDa)

5.53

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008183)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008746
rosa_multiflora	Rmu_sc0000317.1_g000007 Rmu_sc0000894.1_g000063 Rmu_sc0002051.1_g000006 Rmu_sc0032513.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350860
rosa_samantha	Rh2AG311500 Rh2AG311600 Rh2AG311700 Rh2BG319800 Rh2BG319900 Rh2BG394500 Rh2CG298700 Rh2DG336000 Rh3BG265100 Rh4BG133100 Rh4BG133200 Rh4BG146300 Rh4BG146400 Rh4CG143900 Rh4CG144000 Rh6DG199500
rosa_wichuraiana	Rw0G013210 Rw2G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	71, 476
Acc65I	GGTACC	1 cut(s)	576
AccB1I	GGYRCC	1 cut(s)	576
AccI	GTMKAC	2 cut(s)	178, 267
AccII	CGCG	1 cut(s)	300
AfaI	GTAC	4 cut(s)	377, 494, 524, 578
AfiI	CCNNNNNNNGG	2 cut(s)	108, 586
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	2 cut(s)	23, 328
AluBI	AGCT	5 cut(s)	28, 59, 86, 414, 437
AluI	AGCT	5 cut(s)	28, 59, 86, 414, 437
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	137
Alw44I	GTGCAC	1 cut(s)	131
ApaLI	GTGCAC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	465
Asp718I	GGTACC	1 cut(s)	576
AsuHPI	GGTGA	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	576
BarI	GAAGNNNNNNTAC	2 cut(s)	364, 396
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	2 cut(s)	356, 446
BceAI	ACGGC	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	443, 449
BisI	GCNGC	1 cut(s)	466
BlsI	GCNGC	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	578
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	2 cut(s)	427, 560
BmuI	ACTGGG	1 cut(s)	582
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BsaAI	YACGTR	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 586
Bse1I	ACTGG	1 cut(s)	577
BseDI	CCNNGG	1 cut(s)	580
BseGI	GGATG	3 cut(s)	117, 367, 551
BseLI	CCNNNNNNNGG	2 cut(s)	108, 586
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	1 cut(s)	605
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	379, 437
BslI	CCNNNNNNNGG	2 cut(s)	108, 586
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	2 cut(s)	379, 437
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	578
BspT107I	GGYRCC	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	577
BssECI	CCNNGG	1 cut(s)	580
BssMI	GATC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	580
Bst4CI	ACNGT	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	416
BstF5I	GGATG	3 cut(s)	117, 367, 551
BstFNI	CGCG	1 cut(s)	300
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 411
BstNSI	RCATGY	1 cut(s)	484
BstSLI	GKGCMC	1 cut(s)	135
BstSNI	TACGTA	1 cut(s)	492
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	117, 367, 551
Cac8I	GCNNGC	1 cut(s)	416
Csp6I	GTAC	4 cut(s)	376, 493, 523, 577
CviAII	CATG	5 cut(s)	91, 287, 470, 481, 515
CviJI	RGCY	9 cut(s)	28, 59, 86, 101, 405, 414, 437, 468, 505
CviKI_1	RGCY	9 cut(s)	28, 59, 86, 101, 405, 414, 437, 468, 505
CviQI	GTAC	4 cut(s)	376, 493, 523, 577
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
Eco105I	TACGTA	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	5 cut(s)	94, 290, 473, 484, 518
FaqI	GGGAC	2 cut(s)	379, 437
FatI	CATG	5 cut(s)	90, 286, 469, 480, 514
FblI	GTMKAC	2 cut(s)	178, 267
Fnu4HI	GCNGC	1 cut(s)	466
FokI	GGATG	3 cut(s)	124, 374, 538
Fsp4HI	GCNGC	1 cut(s)	466
FspBI	CTAG	2 cut(s)	443, 449
GluI	GCNGC	1 cut(s)	466
Hin1II	CATG	5 cut(s)	94, 290, 473, 484, 518
HincII	GTYRAC	2 cut(s)	179, 570
HindII	GTYRAC	2 cut(s)	179, 570
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	2 cut(s)	175, 269
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	6 cut(s)	133, 152, 179, 268, 343, 570
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	3 cut(s)	359, 422, 443
Hpy8I	GTNNAC	6 cut(s)	133, 152, 179, 268, 343, 570
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	6 cut(s)	7, 88, 185, 299, 366, 579
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	2 cut(s)	355, 491
HpyCH4V	TGCA	6 cut(s)	133, 395, 418, 465, 551, 601
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 411
HpySE526I	ACGT	2 cut(s)	355, 491
Hsp92II	CATG	5 cut(s)	94, 290, 473, 484, 518
KpnI	GGTACC	1 cut(s)	580
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	592
LpnPI	CCDG	4 cut(s)	90, 152, 509, 558
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	2 cut(s)	427, 560
MaeI	CTAG	2 cut(s)	443, 449
MaeII	ACGT	2 cut(s)	355, 491
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	2 cut(s)	388, 556
MlyI	GAGTC	2 cut(s)	184, 263
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	6 cut(s)	46, 102, 205, 295, 556, 583
MseI	TTAA	4 cut(s)	45, 282, 432, 607
MslI	CAYNNNNRTG	2 cut(s)	250, 513
MspA1I	CMGCKG	1 cut(s)	28
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	392, 411
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	5 cut(s)	94, 290, 473, 484, 518
NlaIV	GGNNCC	1 cut(s)	578
NspI	RCATGY	1 cut(s)	484
PciI	ACATGT	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	467
PleI	GAGTC	2 cut(s)	183, 263
PpsI	GAGTC	2 cut(s)	183, 263
Ppu21I	YACGTR	1 cut(s)	492
PscI	ACATGT	1 cut(s)	480
PsiI	TTATAA	2 cut(s)	71, 476
PspN4I	GGNNCC	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	4 cut(s)	377, 494, 524, 578
RsaNI	GTAC	4 cut(s)	376, 493, 523, 577
RseI	CAYNNNNRTG	2 cut(s)	250, 513
SalI	GTCGAC	1 cut(s)	177
SaqAI	TTAA	4 cut(s)	45, 282, 432, 607
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	1 cut(s)	240
SchI	GAGTC	2 cut(s)	184, 263
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	2 cut(s)	427, 560
SmiMI	CAYNNNNRTG	2 cut(s)	250, 513
SnaBI	TACGTA	1 cut(s)	492
Sse9I	AATT	2 cut(s)	388, 556
SspMI	CTAG	2 cut(s)	443, 449
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	2 cut(s)	358, 494
TaqI	TCGA	3 cut(s)	178, 239, 561
TasI	AATT	2 cut(s)	388, 556
Tru1I	TTAA	4 cut(s)	45, 282, 432, 607
Tru9I	TTAA	4 cut(s)	45, 282, 432, 607
TseI	GCWGC	1 cut(s)	465
TspDTI	ATGAA	2 cut(s)	107, 204
VneI	GTGCAC	1 cut(s)	131
XbaI	TCTAGA	1 cut(s)	442
XceI	RCATGY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XmiI	GTMKAC	2 cut(s)	178, 267
XspI	CTAG	2 cut(s)	443, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.