Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008183

Physical Location & Seq

Genomic Coordinates Forward (+)

39776331 .. 39777668

Gene Structure 1338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG311500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGCAGGGAACTAAAACAAAAGCGGGAGAATTTTCAAAACAAAGAAATGACTTAGAAGGAAAGGATGAAATATCGGTCAAGGGCGATGATGGTTTGGTTAGGAAGACGAAAGTGCTCAGTCCACAGTTGTTTAACGATACGGTACGGGCAATGTCTATTAAAAAAGTGGTGGCAATTTGCGAGATTAGATTTGGGTCAATACAGATGATAGGCTCTCCGCACCCGAAAGTCTGCCAATTAATGGTTGAGGGGTTGGATCCGTTGAATGAATTTGTTAACATACATGGACAACATCATGTCATCTTGGCAAAGGACTTTGCTCGCATAATGGGAGTCAACGATGGTGGAAGTGATATAGAGTTGAGTTGGAAGAGTGATGAAGATCTCGTCAACAGGTTCAAACTATGTTTGGCGGGGGGAGGAGATGCTATCACAATAGCAACATTGAGGGAGATTGTCATTGAAAGGAAAGAAGCTAACAATTTGTTCATGAAGGGTTTCATCATTTATGTCATGGCAACACTGTTGTGTCCGGTAGGAGGCGCAGAAGTAGAGTCTGCATTGTTGTTTGCTCTTATGGATACGTGCTATATAAATTCCCAGAATTGGGCGACATATGCTTATCAGAAGTTGATAATGGGTGTGTTGATGTTCAAATCAGGCAAAGCTGCTGCATTATCCGGATGTATGTTATTCCTGCAAGTGTTCTACTTTGATTCAGTGAACAAAATGTGCAGATGGGTGGACAAGAATGCAAGACCATTGTGTGAATGGGGAGATGATCATGTATTTACACTGTTAAAGTGGGTGAAGGATTACGGAGGTGTATGCTCTTCTAACCACGAAGTTTGGGTACCGACCAAGGTATCGAGAATAATATATGGAGCGAATGCTGCAAAAAGGGAAGCAACCGATAAGTGGGATAGAGATGGGGAGGCGATGACAGTTAAGAAGAAAGTTGAACATCTGAAAATGAGTTTTGTTAAGCTGGAGGAAGCTGTTGTTGTTATAATGCCAAAGATAGCTACCATAAAGGAAGCCGTTGAGAGGATGAGTAGGTTGGTCGGTGTGCATTATAGGGAGAGAATTGAACACATTGTATCACAGGTGGTGAGTCGACTAAATGACAGAGGTGGAAACAAGTTTGATGAGGGAAAAAACAAAAACAGAAACATTTCGACATCACAGAAACATGATAAAGGTGTAGAATCAACACAGTTCAATCATGGAAGGAAACGCGAGGAAGATTCGGGGAGTTACTCATTGAAGGTCCGGTATGTGAACAAAGGCGAACGTGGGGATGGAACAAGAAGGCGGGTAAGAAATAAAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

445

Amino Acids

50.16

Weight (kDa)

9.22

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008183)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008746
rosa_multiflora	Rmu_sc0000317.1_g000007 Rmu_sc0000894.1_g000063 Rmu_sc0002051.1_g000006 Rmu_sc0032513.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350860
rosa_samantha	Rh2AG311500 Rh2AG311600 Rh2AG311700 Rh2BG319800 Rh2BG319900 Rh2BG394500 Rh2CG298700 Rh2DG336000 Rh3BG265100 Rh4BG133100 Rh4BG133200 Rh4BG146300 Rh4BG146400 Rh4CG143900 Rh4CG144000 Rh6DG199500
rosa_wichuraiana	Rw0G013210 Rw2G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1010
Acc65I	GGTACC	1 cut(s)	853
AccB1I	GGYRCC	1 cut(s)	853
AccB7I	CCANNNNNTGG	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	1117
AccII	CGCG	1 cut(s)	1239
AccIII	TCCGGA	1 cut(s)	680
AciI	CCGC	4 cut(s)	23, 218, 413, 1315
AclWI	GGATC	2 cut(s)	251, 264
AcsI	RAATTY	3 cut(s)	29, 269, 595
AfaI	GTAC	2 cut(s)	144, 855
AfiI	CCNNNNNNNGG	6 cut(s)	241, 539, 606, 607, 918, 1047
AgsI	TTSAA	9 cut(s)	36, 265, 400, 464, 655, 962, 1091, 1222, 1267
AleI	CACNNNNGTG	1 cut(s)	526
AluBI	AGCT	5 cut(s)	476, 668, 988, 998, 1025
AluI	AGCT	5 cut(s)	476, 668, 988, 998, 1025
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	251, 264
Aor13HI	TCCGGA	1 cut(s)	680
ApeKI	GCWGC	3 cut(s)	668, 671, 893
ApoI	RAATTY	3 cut(s)	29, 269, 595
AseI	ATTAAT	1 cut(s)	239
Asp700I	GAANNNNTTC	2 cut(s)	497, 1174
Asp718I	GGTACC	1 cut(s)	853
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	1270
AsuHPI	GGTGA	2 cut(s)	820, 1123
AvaII	GGWCC	1 cut(s)	1270
BaeI	ACNNNNGTAYC	2 cut(s)	849, 882
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	853
BarI	GAAGNNNNNNTAC	2 cut(s)	837, 869
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	655, 658, 880
BccI	CCATC	5 cut(s)	83, 335, 732, 923, 1295
BceAI	ACGGC	1 cut(s)	1025
BciVI	GTATCC	1 cut(s)	574
BclI	TGATCA	1 cut(s)	781
BfuI	GTATCC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	3 cut(s)	669, 672, 894
BlsI	GCNGC	3 cut(s)	670, 673, 895
Bme18I	GGWCC	1 cut(s)	1270
BmgT120I	GGNCC	1 cut(s)	1270
BmiI	GGNNCC	2 cut(s)	258, 855
BmsI	GCATC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	1010
BsaAI	YACGTR	1 cut(s)	585
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	861
BsaWI	WCCGGW	3 cut(s)	532, 680, 1272
Bsc4I	CCNNNNNNNGG	6 cut(s)	241, 539, 606, 607, 918, 1047
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	680
BseDI	CCNNGG	1 cut(s)	861
BseGI	GGATG	4 cut(s)	70, 689, 1056, 1306
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	6 cut(s)	241, 539, 606, 607, 918, 1047
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	655, 658, 880
BsgI	GTGCAG	1 cut(s)	754
Bsh1236I	CGCG	1 cut(s)	1239
BshNI	GGYRCC	1 cut(s)	853
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	533, 681, 1273
BslI	CCNNNNNNNGG	6 cut(s)	241, 539, 606, 607, 918, 1047
BsmI	GAATGC	2 cut(s)	757, 895
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	680
Bsp143I	GATC	3 cut(s)	256, 382, 781
BspACI	CCGC	4 cut(s)	23, 218, 413, 1315
BspCNI	CTCAG	1 cut(s)	129
BspEI	TCCGGA	1 cut(s)	680
BspFNI	CGCG	1 cut(s)	1239
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	258, 855
BspPI	GGATC	2 cut(s)	251, 264
BspQI	GCTCTTC	1 cut(s)	838
BspT107I	GGYRCC	1 cut(s)	853
BsrDI	GCAATG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	861
BssMI	GATC	3 cut(s)	256, 382, 781
BssT1I	CCWWGG	1 cut(s)	861
Bst4CI	ACNGT	6 cut(s)	126, 142, 525, 798, 946, 1218
Bst6I	CTCTTC	2 cut(s)	365, 838
BstBAI	YACGTR	1 cut(s)	585
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	52, 116
BstF5I	GGATG	4 cut(s)	70, 689, 1056, 1306
BstFNI	CGCG	1 cut(s)	1239
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	3 cut(s)	259, 385, 784
BstMBI	GATC	3 cut(s)	256, 382, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 893
BstUI	CGCG	1 cut(s)	1239
BstV1I	GCAGC	3 cut(s)	655, 658, 880
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	2 cut(s)	256, 382
BstYI	RGATCY	2 cut(s)	256, 382
BsuI	GTATCC	1 cut(s)	574
BtgZI	GCGATG	2 cut(s)	99, 953
BtsCI	GGATG	4 cut(s)	70, 689, 1056, 1306
BtsIMutI	CAGTG	3 cut(s)	521, 726, 794
Cac8I	GCNNGC	1 cut(s)	322
CciI	TCATGA	1 cut(s)	489
CfoI	GCGC	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	1270
Csp6I	GTAC	2 cut(s)	143, 854
CspCI	CAANNNNNGTGG	4 cut(s)	325, 360, 830, 865
CviAII	CATG	7 cut(s)	284, 296, 490, 514, 785, 1193, 1226
CviJI	RGCY	7 cut(s)	213, 476, 668, 988, 998, 1025, 1040
CviKI_1	RGCY	7 cut(s)	213, 476, 668, 988, 998, 1025, 1040
CviQI	GTAC	2 cut(s)	143, 854
DdeI	CTNAG	2 cut(s)	52, 116
DpnI	GATC	3 cut(s)	258, 384, 783
DpnII	GATC	3 cut(s)	256, 382, 781
Eam1104I	CTCTTC	2 cut(s)	365, 838
EarI	CTCTTC	2 cut(s)	365, 838
Eco130I	CCWWGG	1 cut(s)	861
Eco47I	GGWCC	1 cut(s)	1270
EcoT14I	CCWWGG	1 cut(s)	861
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	7 cut(s)	287, 299, 493, 517, 788, 1196, 1229
FatI	CATG	7 cut(s)	283, 295, 489, 513, 784, 1192, 1225
FauI	CCCGC	3 cut(s)	16, 406, 1308
FauNDI	CATATG	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	1 cut(s)	1117
Fnu4HI	GCNGC	3 cut(s)	669, 672, 894
FokI	GGATG	4 cut(s)	77, 696, 1063, 1313
Fsp4HI	GCNGC	3 cut(s)	669, 672, 894
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	3 cut(s)	669, 672, 894
GsuI	CTGGAG	1 cut(s)	1010
HapII	CCGG	3 cut(s)	533, 681, 1273
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	7 cut(s)	287, 299, 493, 517, 788, 1196, 1229
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	4 cut(s)	277, 337, 391, 1118
HindII	GTYRAC	4 cut(s)	277, 337, 391, 1118
HinfI	GANTC	6 cut(s)	333, 554, 716, 1114, 1208, 1247
HpaI	GTTAAC	1 cut(s)	277
HpaII	CCGG	3 cut(s)	533, 681, 1273
HphI	GGTGA	2 cut(s)	820, 1123
Hpy166II	GTNNAC	8 cut(s)	122, 277, 337, 391, 724, 745, 1118, 1282
Hpy188I	TCNGA	2 cut(s)	627, 969
Hpy188III	TCNNGA	3 cut(s)	490, 681, 870
Hpy8I	GTNNAC	8 cut(s)	122, 277, 337, 391, 724, 745, 1118, 1282
HpyAV	CCTTC	6 cut(s)	50, 487, 805, 1224, 1261, 1305
HpyCH4III	ACNGT	6 cut(s)	126, 142, 525, 798, 946, 1218
HpyCH4IV	ACGT	2 cut(s)	584, 1294
HpyCH4V	TGCA	8 cut(s)	4, 560, 674, 700, 735, 755, 896, 1072
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 893
HpyF3I	CTNAG	2 cut(s)	52, 116
HpySE526I	ACGT	2 cut(s)	584, 1294
Hsp92II	CATG	7 cut(s)	287, 299, 493, 517, 788, 1196, 1229
HspAI	GCGC	1 cut(s)	543
Kpn2I	TCCGGA	1 cut(s)	680
KpnI	GGTACC	1 cut(s)	857
Ksp22I	TGATCA	1 cut(s)	781
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	256, 382, 781
LguI	GCTCTTC	1 cut(s)	838
LmnI	GCTCC	1 cut(s)	884
LpnPI	CCDG	9 cut(s)	379, 546, 614, 645, 694, 710, 974, 1091, 1286
Lsp1109I	GCAGC	3 cut(s)	655, 658, 880
LweI	GCATC	1 cut(s)	415
MaeII	ACGT	2 cut(s)	584, 1294
MaeIII	GTNAC	1 cut(s)	1256
MalI	GATC	3 cut(s)	258, 384, 783
MboI	GATC	3 cut(s)	256, 382, 781
MboII	GAAGA	6 cut(s)	115, 382, 392, 825, 964, 1256
MflI	RGATCY	2 cut(s)	256, 382
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	8 cut(s)	29, 174, 236, 269, 481, 595, 604, 1086
MlyI	GAGTC	3 cut(s)	342, 563, 1123
MmeI	TCCRAC	2 cut(s)	234, 347
MroI	TCCGGA	1 cut(s)	680
MroXI	GAANNNNTTC	2 cut(s)	497, 1174
MseI	TTAA	7 cut(s)	132, 159, 239, 276, 800, 948, 984
MslI	CAYNNNNRTG	1 cut(s)	526
MspI	CCGG	3 cut(s)	533, 681, 1273
Mva1269I	GAATGC	2 cut(s)	757, 895
MvnI	CGCG	1 cut(s)	1239
MwoI	GCNNNNNNNGC	2 cut(s)	617, 893
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	3 cut(s)	256, 382, 781
NlaIII	CATG	7 cut(s)	287, 299, 493, 517, 788, 1196, 1229
NlaIV	GGNNCC	2 cut(s)	258, 855
OliI	CACNNNNGTG	1 cut(s)	526
PagI	TCATGA	1 cut(s)	489
PciSI	GCTCTTC	1 cut(s)	838
PctI	GAATGC	2 cut(s)	757, 895
PdmI	GAANNNNTTC	2 cut(s)	497, 1174
PfeI	GAWTC	3 cut(s)	716, 1208, 1247
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	670, 673, 895
PleI	GAGTC	3 cut(s)	341, 562, 1122
PpsI	GAGTC	3 cut(s)	341, 562, 1122
Ppu21I	YACGTR	1 cut(s)	585
PshBI	ATTAAT	1 cut(s)	239
PsiI	TTATAA	1 cut(s)	1010
PspN4I	GGNNCC	2 cut(s)	258, 855
PspPI	GGNCC	1 cut(s)	1270
PsuI	RGATCY	2 cut(s)	256, 382
RsaI	GTAC	2 cut(s)	144, 855
RsaNI	GTAC	2 cut(s)	143, 854
RseI	CAYNNNNRTG	1 cut(s)	526
SalI	GTCGAC	1 cut(s)	1116
SapI	GCTCTTC	1 cut(s)	838
SaqAI	TTAA	7 cut(s)	132, 159, 239, 276, 800, 948, 984
SatI	GCNGC	3 cut(s)	669, 672, 894
Sau3AI	GATC	3 cut(s)	256, 382, 781
Sau96I	GGNCC	1 cut(s)	1270
SchI	GAGTC	3 cut(s)	342, 563, 1123
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	415
SinI	GGWCC	1 cut(s)	1270
SmiMI	CAYNNNNRTG	1 cut(s)	526
Sse9I	AATT	8 cut(s)	29, 174, 236, 269, 481, 595, 604, 1086
SsiI	CCGC	4 cut(s)	23, 218, 413, 1315
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	6 cut(s)	126, 142, 525, 798, 946, 1218
TaiI	ACGT	2 cut(s)	587, 1297
TaqI	TCGA	3 cut(s)	869, 1117, 1178
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	8 cut(s)	29, 174, 236, 269, 481, 595, 604, 1086
TfiI	GAWTC	3 cut(s)	716, 1208, 1247
Tru1I	TTAA	7 cut(s)	132, 159, 239, 276, 800, 948, 984
Tru9I	TTAA	7 cut(s)	132, 159, 239, 276, 800, 948, 984
TscAI	CASTG	3 cut(s)	528, 726, 801
TseI	GCWGC	3 cut(s)	668, 671, 893
TspDTI	ATGAA	6 cut(s)	81, 282, 393, 478, 490, 506
TspGWI	ACGGA	2 cut(s)	249, 834
TspRI	CASTG	3 cut(s)	528, 726, 801
Van91I	CCANNNNNTGG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	1270
VspI	ATTAAT	1 cut(s)	239
XapI	RAATTY	3 cut(s)	29, 269, 595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	768
XmiI	GTMKAC	1 cut(s)	1117
XmnI	GAANNNNTTC	2 cut(s)	497, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.