Rh4BG146300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0008183
Physical Location & Seq
Reverse (-)
26181388 .. 26197540
16153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG146300.1

Sequence Viewer

Length: 474 bp
ATGTCTCCCGAGGCAACGCGTAGAAGCATTAAGGAAAAAATTAGGAGGTATGATACTGCAATTGTCGCAATGTATGACTATAGTAGCCTAACCCCTGACGACCTTGGAAATTGTCTTGCACCACACGGACTAGTTTGCAGCAATAAAGAGCATGCTAGCTGCTATCCTCCTTGGGAGAGTGATTCTGAAGATGATAGGATATGGGACGAACCGAATATAGAAGTAGCCAATGCAATGCTCAATGCTAAGATTGAAAGGTTGAGAATAAAGGATGAGGAAAGAAAAAGGAAAGGCCTATTACCTACTCCTGCGCCTCTTCTTCTTTCTGGGTTCAAAGAGGAGGAGAAGAAAAATGAGAAAGTAATGAGCTTGAAGGGAACAACAGGTAAGAGAAAGATGAAGAAAGCATCAAAATCTCTTGAGTGCAAGCCTAGCTCAAGTCCTCGGGGCAGTGGCATGAAGACCCCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.71

Weight (kDa)

9.13

Isoelectric Point (pI)

71.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 3 cut(s) 254, 334, 373
AhlI ACTAGT 1 cut(s) 130
AluBI AGCT 3 cut(s) 159, 369, 435
AluI AGCT 3 cut(s) 159, 369, 435
Alw26I GTCTC 1 cut(s) 9
Ama87I CYCGRG 2 cut(s) 8, 444
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 138, 159
AspLEI GCGC 1 cut(s) 313
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 2 cut(s) 8, 444
BbsI GAAGAC 1 cut(s) 467
BbvI GCAGC 2 cut(s) 146, 150
BcoDI GTCTC 1 cut(s) 9
BcuI ACTAGT 1 cut(s) 130
BfaI CTAG 4 cut(s) 131, 156, 432, 472
BfmI CTRYAG 1 cut(s) 79
BisI GCNGC 2 cut(s) 139, 160
BlsI GCNGC 2 cut(s) 140, 161
BmeT110I CYCGRG 2 cut(s) 8, 444
BmsI GCATC 1 cut(s) 416
BmtI GCTAGC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 467
BpuEI CTTGAG 2 cut(s) 421, 440
BsaJI CCNNGG 4 cut(s) 9, 103, 170, 443
Bse3DI GCAATG 2 cut(s) 75, 240
BseDI CCNNGG 4 cut(s) 9, 103, 170, 443
BseGI GGATG 1 cut(s) 277
BseMI GCAATG 2 cut(s) 75, 240
BseRI GAGGAG 2 cut(s) 353, 356
BseXI GCAGC 2 cut(s) 146, 150
Bsh1236I CGCG 1 cut(s) 19
BshFI GGCC 1 cut(s) 294
BsiHKCI CYCGRG 2 cut(s) 8, 444
BslFI GGGAC 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 294
BsoBI CYCGRG 2 cut(s) 8, 444
BspANI GGCC 1 cut(s) 294
BspFNI CGCG 1 cut(s) 19
BspOI GCTAGC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 75, 240
BssECI CCNNGG 4 cut(s) 9, 103, 170, 443
BssT1I CCWWGG 2 cut(s) 103, 170
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 3 cut(s) 153, 157, 428
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 65, 432
BstNSI RCATGY 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 79
BstUI CGCG 1 cut(s) 19
BstV1I GCAGC 2 cut(s) 146, 150
BstV2I GAAGAC 1 cut(s) 467
BsuRI GGCC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 3 cut(s) 153, 157, 428
CfoI GCGC 1 cut(s) 313
CviAII CATG 2 cut(s) 152, 457
CviJI RGCY 7 cut(s) 87, 159, 227, 294, 369, 430, 435
CviKI_1 RGCY 7 cut(s) 87, 159, 227, 294, 369, 430, 435
DdeI CTNAG 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 103, 170
Eco147I AGGCCT 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 2 cut(s) 8, 444
EcoT14I CCWWGG 2 cut(s) 103, 170
ErhI CCWWGG 2 cut(s) 103, 170
FaeI CATG 2 cut(s) 155, 460
FaiI YATR 7 cut(s) 51, 75, 81, 153, 202, 218, 458
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 151, 456
Fnu4HI GCNGC 2 cut(s) 139, 160
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 139, 160
FspBI CTAG 4 cut(s) 131, 156, 432, 472
GlaI GCGC 1 cut(s) 312
GluI GCNGC 2 cut(s) 139, 160
HaeIII GGCC 1 cut(s) 294
HhaI GCGC 1 cut(s) 313
Hin1II CATG 2 cut(s) 155, 460
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HinfI GANTC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 8, 419
HpyAV CCTTC 1 cut(s) 367
HpyCH4V TGCA 5 cut(s) 59, 119, 138, 233, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 432
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 2 cut(s) 155, 460
HspAI GCGC 1 cut(s) 311
LpnPI CCDG 4 cut(s) 108, 312, 321, 369
Lsp1109I GCAGC 2 cut(s) 146, 150
LweI GCATC 1 cut(s) 416
MaeI CTAG 4 cut(s) 131, 156, 432, 472
MboII GAAGA 6 cut(s) 200, 308, 311, 358, 412, 472
MfeI CAATTG 1 cut(s) 60
MluCI AATT 3 cut(s) 39, 60, 109
MluI ACGCGT 1 cut(s) 17
MnlI CCTC 8 cut(s) 4, 39, 177, 268, 324, 331, 334, 453
MseI TTAA 1 cut(s) 30
MunI CAATTG 1 cut(s) 60
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 2 cut(s) 65, 432
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 2 cut(s) 155, 460
NspI RCATGY 1 cut(s) 155
PaeI GCATGC 1 cut(s) 155
PceI AGGCCT 1 cut(s) 294
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 2 cut(s) 140, 161
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 2 cut(s) 139, 160
SetI ASST 8 cut(s) 50, 105, 161, 260, 304, 371, 388, 437
SfaNI GCATC 1 cut(s) 416
SfcI CTRYAG 1 cut(s) 79
SmlI CTYRAG 2 cut(s) 419, 436
SmoI CTYRAG 2 cut(s) 419, 436
SpeI ACTAGT 1 cut(s) 130
SphI GCATGC 1 cut(s) 155
Sse9I AATT 3 cut(s) 39, 60, 109
SseBI AGGCCT 1 cut(s) 294
SspMI CTAG 4 cut(s) 131, 156, 432, 472
StuI AGGCCT 1 cut(s) 294
StyI CCWWGG 2 cut(s) 103, 170
TasI AATT 3 cut(s) 39, 60, 109
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 457
TseI GCWGC 2 cut(s) 138, 159
TspDTI ATGAA 2 cut(s) 413, 473
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 457
XceI RCATGY 1 cut(s) 155
XspI CTAG 4 cut(s) 131, 156, 432, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.