Rw2G031710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008183
Physical Location & Seq
Forward (+)
51962595 .. 51964568
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G031710.1

Sequence Viewer

Length: 1110 bp
ATGGCAATTGAGGAGGAAGTTGAACAGCTGAAAATGGGTTTTGTTAAGCTGGAGGAAGTTGTTGTAGTTATAATGCCAGAGATAGCTACCATGAAGGAAACCGTTGACAGGATGAGTAGGTTGGTGGTGAGTCGACTAAATGATGGAGGTGGGAACAAGTTTGATCAGGAAAAGAACAAAAACAGAAACATATCGAGCTCACAGCAACGTGATGAAGATGTAGAATCAACACACTTCAATCATGGAAAGGAACGCGAGGAAGGTTTGGAGAGTTACTCATTGAAGTTCTTGTATGTCAACAAAGGCGAACGTCAGGATTGGACAAGAAGGCAGCCACATGATCTATGTACGGAAGGTAAGGGAGAGCCGCAGGTTTTAGAGCGATTAGCAGTATCAGTAAGCCCGATAGGGCCTCCCAAGGCAGCGCATAGAAGGACGAAAGATAAAACTCGGAGGCTGAAAACAGTAATATCGAAGAGATATGTTCAGAAATTATTCCCCAAGTCACCATCAAGGGTTGCAGCAAATTTCCTCAATGGAAGGCAGAGGGTAACCATAAACAGGAAAAAGGAAGGTGTTTTGGCAGGGTCGTTCATGATAAACCGGGATACATCTGACACGGTCGTAGAAATGTTGAAGTTTGTGTTTATGCCGCGACCACTAACTGCAAAGATGGCACGGTACCACCTTGAAGCTTCTCTTGCACCAGATGGACTAGTTTGTAGCCATGTTATAAACATGTTTGCTACGTACCTAAATGAGCCAAAAGGCCATGTTTGGTACTTTAACACATACTTTGGGGGTGGTGCAACCAATTTCGATGTCTCAATTGGGTACATTGGATGGGAGGAGCATATTAGAAGCGTATGCAGACTGAATGATTTCGCTCCTACATTGAAGGAATGCACAAAGTTGGTCATGTTGGACGTGGTTTTTAAGAATGAAATTGTAGGAGCATGTATTCAGCGTGTACTGGTGTTCAAAGACTTTACAATGGTGGATCCCATTGCAAGTCCCAGGCAGGAAGGAGTAGTGAACTGTGGGGTTTTTCTAATCCGGAAGATGCAGAACTATGGTCGTGATTGGGCAAAGAAGGTAATGGGCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

42.15

Weight (kDa)

9.34

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 71, 734
Acc36I ACCTGC 1 cut(s) 361
Acc65I GGTACC 1 cut(s) 681
AccB1I GGYRCC 1 cut(s) 681
AccI GTMKAC 1 cut(s) 133
AccII CGCG 2 cut(s) 255, 655
AccIII TCCGGA 1 cut(s) 1056
AciI CCGC 2 cut(s) 368, 653
AclWI GGATC 2 cut(s) 995, 1008
AcsI RAATTY 1 cut(s) 526
AfaI GTAC 6 cut(s) 349, 683, 752, 782, 836, 972
AfiI CCNNNNNNNGG 2 cut(s) 108, 561
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 7 cut(s) 23, 238, 283, 637, 692, 898, 982
AhlI ACTAGT 1 cut(s) 715
AjiI CACGTC 1 cut(s) 928
AjnI CCWGG 1 cut(s) 1016
AluBI AGCT 5 cut(s) 28, 49, 86, 198, 695
AluI AGCT 5 cut(s) 28, 49, 86, 198, 695
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 829
AlwI GGATC 2 cut(s) 995, 1008
Aor13HI TCCGGA 1 cut(s) 1056
AoxI GGCC 2 cut(s) 410, 769
ApeKI GCWGC 3 cut(s) 331, 422, 521
ApoI RAATTY 1 cut(s) 526
Asp700I GAANNNNTTC 2 cut(s) 494, 881
Asp718I GGTACC 1 cut(s) 681
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 139, 498
BaeGI GKGCMC 1 cut(s) 1106
BamHI GGATCC 1 cut(s) 1000
BanI GGYRCC 1 cut(s) 681
BanII GRGCYC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 3 cut(s) 343, 434, 533
BccI CCATC 5 cut(s) 137, 517, 667, 704, 837
BciT130I CCWGG 1 cut(s) 1018
BciVI GTATCC 1 cut(s) 601
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 1 cut(s) 605
BcoDI GTCTC 1 cut(s) 829
BcuI ACTAGT 1 cut(s) 715
BfaI CTAG 1 cut(s) 716
BfuAI ACCTGC 1 cut(s) 361
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 5 cut(s) 332, 368, 423, 522, 653
BlsI GCNGC 5 cut(s) 333, 369, 424, 523, 654
Bme1390I CCNGG 2 cut(s) 605, 1018
BmgBI CACGTC 1 cut(s) 928
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 2 cut(s) 683, 1002
BmrFI CCNGG 2 cut(s) 605, 1018
BmsI GCATC 1 cut(s) 1053
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BpmI CTGGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 605
BsaAI YACGTR 1 cut(s) 750
BsaJI CCNNGG 2 cut(s) 417, 1016
BsaWI WCCGGW 1 cut(s) 1056
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 561
Bse1I ACTGG 1 cut(s) 978
Bse3DI GCAATG 1 cut(s) 1005
BseAI TCCGGA 1 cut(s) 1056
BseBI CCWGG 1 cut(s) 1018
BseDI CCNNGG 2 cut(s) 417, 1016
BseGI GGATG 2 cut(s) 117, 848
BseLI CCNNNNNNNGG 2 cut(s) 108, 561
BseMI GCAATG 1 cut(s) 1005
BseNI ACTGG 1 cut(s) 978
BseRI GAGGAG 2 cut(s) 26, 863
BseSI GKGCMC 1 cut(s) 1106
BseXI GCAGC 3 cut(s) 343, 434, 533
Bsh1236I CGCG 2 cut(s) 255, 655
Bsh1285I CGRYCG 1 cut(s) 624
BshFI GGCC 2 cut(s) 412, 771
BshNI GGYRCC 1 cut(s) 681
BsiEI CGRYCG 1 cut(s) 624
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 2 cut(s) 604, 1057
BslFI GGGAC 1 cut(s) 999
BslI CCNNNNNNNGG 2 cut(s) 108, 561
BsmAI GTCTC 1 cut(s) 829
BsmFI GGGAC 1 cut(s) 999
BsmI GAATGC 1 cut(s) 908
BsnI GGCC 2 cut(s) 412, 771
Bsp1286I GDGCHC 2 cut(s) 200, 1106
Bsp13I TCCGGA 1 cut(s) 1056
Bsp143I GATC 3 cut(s) 163, 340, 1000
BspACI CCGC 2 cut(s) 368, 653
BspANI GGCC 2 cut(s) 412, 771
BspEI TCCGGA 1 cut(s) 1056
BspFNI CGCG 2 cut(s) 255, 655
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 2 cut(s) 683, 1002
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 2 cut(s) 995, 1008
BspT107I GGYRCC 1 cut(s) 681
BsrDI GCAATG 1 cut(s) 1005
BsrI ACTGG 1 cut(s) 978
BssECI CCNNGG 2 cut(s) 417, 1016
BssMI GATC 3 cut(s) 163, 340, 1000
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 1018
Bst4CI ACNGT 5 cut(s) 103, 466, 622, 681, 1040
Bst6I CTCTTC 1 cut(s) 470
BstBAI YACGTR 1 cut(s) 750
BstEII GGTNACC 1 cut(s) 550
BstF5I GGATG 2 cut(s) 117, 848
BstFNI CGCG 2 cut(s) 255, 655
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 3 cut(s) 166, 343, 1003
BstMAI GTCTC 1 cut(s) 829
BstMBI GATC 3 cut(s) 163, 340, 1000
BstMCI CGRYCG 1 cut(s) 624
BstMWI GCNNNNNNNGC 2 cut(s) 674, 701
BstNI CCWGG 1 cut(s) 1018
BstNSI RCATGY 2 cut(s) 742, 960
BstPI GGTNACC 1 cut(s) 550
BstSCI CCNGG 2 cut(s) 603, 1016
BstSLI GKGCMC 1 cut(s) 1106
BstSNI TACGTA 1 cut(s) 750
BstUI CGCG 2 cut(s) 255, 655
BstV1I GCAGC 3 cut(s) 343, 434, 533
BstX2I RGATCY 1 cut(s) 1000
BstYI RGATCY 1 cut(s) 1000
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 2 cut(s) 412, 771
BtrI CACGTC 1 cut(s) 928
BtsCI GGATG 2 cut(s) 117, 848
BveI ACCTGC 1 cut(s) 361
CciI TCATGA 1 cut(s) 594
CfoI GCGC 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 6 cut(s) 348, 682, 751, 781, 835, 971
CviQI GTAC 6 cut(s) 348, 682, 751, 781, 835, 971
DpnI GATC 3 cut(s) 165, 342, 1002
DpnII GATC 3 cut(s) 163, 340, 1000
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
Ecl136II GAGCTC 1 cut(s) 198
Eco105I TACGTA 1 cut(s) 750
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 198
Eco91I GGTNACC 1 cut(s) 550
EcoICRI GAGCTC 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 410
EcoO65I GGTNACC 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 1016
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 417
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 1 cut(s) 999
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 5 cut(s) 332, 368, 423, 522, 653
FokI GGATG 2 cut(s) 124, 855
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 5 cut(s) 332, 368, 423, 522, 653
FspBI CTAG 1 cut(s) 716
GlaI GCGC 1 cut(s) 426
GluI GCNGC 5 cut(s) 332, 368, 423, 522, 653
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 2 cut(s) 412, 771
HapII CCGG 2 cut(s) 604, 1057
HhaI GCGC 1 cut(s) 427
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HincII GTYRAC 3 cut(s) 106, 134, 298
HindII GTYRAC 3 cut(s) 106, 134, 298
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 2 cut(s) 130, 224
HpaII CCGG 2 cut(s) 604, 1057
HphI GGTGA 2 cut(s) 139, 498
Hpy166II GTNNAC 5 cut(s) 106, 134, 298, 971, 1036
Hpy188I TCNGA 3 cut(s) 453, 489, 616
Hpy188III TCNNGA 5 cut(s) 167, 314, 595, 1057, 1079
Hpy8I GTNNAC 5 cut(s) 106, 134, 298, 971, 1036
HpyCH4III ACNGT 5 cut(s) 103, 466, 622, 681, 1040
HpyCH4IV ACGT 4 cut(s) 208, 310, 749, 927
HpyCH4V TGCA 8 cut(s) 521, 668, 704, 809, 870, 906, 1010, 1066
HpyF10VI GCNNNNNNNGC 2 cut(s) 674, 701
HpySE526I ACGT 4 cut(s) 208, 310, 749, 927
HspAI GCGC 1 cut(s) 425
Kpn2I TCCGGA 1 cut(s) 1056
KpnI GGTACC 1 cut(s) 685
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 3 cut(s) 163, 340, 1000
LmnI GCTCC 3 cut(s) 850, 892, 953
Lsp1109I GCAGC 3 cut(s) 343, 434, 533
LweI GCATC 1 cut(s) 1053
MaeI CTAG 1 cut(s) 716
MaeII ACGT 4 cut(s) 208, 310, 749, 927
MaeIII GTNAC 3 cut(s) 272, 504, 550
MalI GATC 3 cut(s) 165, 342, 1002
MboI GATC 3 cut(s) 163, 340, 1000
MboII GAAGA 3 cut(s) 227, 487, 1072
MfeI CAATTG 2 cut(s) 6, 828
MflI RGATCY 1 cut(s) 1000
MhlI GDGCHC 2 cut(s) 200, 1106
MluCI AATT 6 cut(s) 6, 491, 526, 814, 828, 945
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 903
MroI TCCGGA 1 cut(s) 1056
MroXI GAANNNNTTC 2 cut(s) 494, 881
MseI TTAA 3 cut(s) 45, 786, 936
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 2 cut(s) 604, 1057
MspR9I CCNGG 2 cut(s) 605, 1018
MunI CAATTG 2 cut(s) 6, 828
Mva1269I GAATGC 1 cut(s) 908
MvaI CCWGG 1 cut(s) 1018
MvnI CGCG 2 cut(s) 255, 655
MwoI GCNNNNNNNGC 2 cut(s) 674, 701
NciI CCSGG 1 cut(s) 605
NdeII GATC 3 cut(s) 163, 340, 1000
NlaIV GGNNCC 2 cut(s) 683, 1002
NmuCI GTSAC 1 cut(s) 504
NspI RCATGY 2 cut(s) 742, 960
PagI TCATGA 1 cut(s) 594
PciI ACATGT 1 cut(s) 738
PctI GAATGC 1 cut(s) 908
PdmI GAANNNNTTC 2 cut(s) 494, 881
PfeI GAWTC 1 cut(s) 224
PflFI GACNNNGTC 1 cut(s) 620
PkrI GCNGC 5 cut(s) 333, 369, 424, 523, 654
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Ppu21I YACGTR 1 cut(s) 750
PscI ACATGT 1 cut(s) 738
PsiI TTATAA 2 cut(s) 71, 734
Psp124BI GAGCTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 1016
PspEI GGTNACC 1 cut(s) 550
PspGI CCWGG 1 cut(s) 1016
PspN4I GGNNCC 2 cut(s) 683, 1002
PspPI GGNCC 1 cut(s) 410
PsuI RGATCY 1 cut(s) 1000
PsyI GACNNNGTC 1 cut(s) 620
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 6 cut(s) 349, 683, 752, 782, 836, 972
RsaNI GTAC 6 cut(s) 348, 682, 751, 781, 835, 971
SacI GAGCTC 1 cut(s) 200
SalI GTCGAC 1 cut(s) 132
SaqAI TTAA 3 cut(s) 45, 786, 936
SatI GCNGC 5 cut(s) 332, 368, 423, 522, 653
Sau3AI GATC 3 cut(s) 163, 340, 1000
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 605, 1018
SduI GDGCHC 2 cut(s) 200, 1106
SfaNI GCATC 1 cut(s) 1053
SnaBI TACGTA 1 cut(s) 750
SpeI ACTAGT 1 cut(s) 715
Sse9I AATT 6 cut(s) 6, 491, 526, 814, 828, 945
SsiI CCGC 2 cut(s) 368, 653
SspMI CTAG 1 cut(s) 716
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 603, 1016
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 5 cut(s) 103, 466, 622, 681, 1040
TaiI ACGT 4 cut(s) 211, 313, 752, 930
TaqI TCGA 4 cut(s) 133, 194, 473, 819
TasI AATT 6 cut(s) 6, 491, 526, 814, 828, 945
TatI WGTACW 1 cut(s) 970
TauI GCSGC 2 cut(s) 370, 655
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 3 cut(s) 45, 786, 936
Tru9I TTAA 3 cut(s) 45, 786, 936
TseFI GTSAC 1 cut(s) 504
TseI GCWGC 3 cut(s) 331, 422, 521
Tsp45I GTSAC 1 cut(s) 504
TspDTI ATGAA 4 cut(s) 107, 228, 583, 957
TspGWI ACGGA 1 cut(s) 365
Tth111I GACNNNGTC 1 cut(s) 620
XapI RAATTY 1 cut(s) 526
XceI RCATGY 2 cut(s) 742, 960
XmiI GTMKAC 1 cut(s) 133
XmnI GAANNNNTTC 2 cut(s) 494, 881
XspI CTAG 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.