Rmu_sc0000894.1_g000063

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000894.1
OG0008183
Physical Location & Seq
Reverse (-)
331479 .. 335272
3794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000894.1_g000063.1.cds

Sequence Viewer

Length: 1998 bp
atggttgttaacttttcccacatcgaaatgaaggaggaggagaacaaaatgattgaaaacgaaggtcaccatattatagcatttgaggaaaacaggaaaggacaacgggtgggaactaaaagaaaagcgggggaatcttccaaagaaacctatgacttagaaggaaatgatgaaatatcggtaaggggcgaggatggtttggttaggaagaccaaagtacttagtccacagttgtttaacgatacggtacaggaaatgtctattaagaaagtggtgacaatttgcgagattggatttgggtcaattcagataatagggtctcccacattgcacctgaaagtctgccaactaatggtggaggggttagatccgttgaatgaacttgttatcatacatggaaaggagcatgtcatatcggcaaaagactttgctcggataatgggaatcaacgatgatggaagtgatatagagttgagtgggaagagtgatgaagatcttgtaaacaggttgaaactatgtttagcagggggaggagatgctatcacaatagcaacattgagggagattgtggttgaaagaaaggaagctgacaatttgttcgtgatgggtttcatcctttatgccatggaaacgctgttgtgtccaaattgggtgacctatgcttatcagaagttgatcatgggtgtgttgatgttcaaatcaggcaaagctgctgcattatccgggataactatacatggagcgaatgctgctaaaagagcacggaccaataagtgggaaagaggtggtgaggcgatggcaattgaggaggaagttgaacagctgaaaatgggttttgttaagctggaggaagctgttgtagttataatgccagaggaagctgttgtagttataatgccagagatagctaccatgaaggaaaccgttgacaggatgagtaggttggttggtgtacacgatagggagagaattgaacacattgtaacacaggtgggaacgcgaggaaggtttggggagttactcattgaagttcttgtatgtcaacaaaggcgaacgtcgggatgggacaagaaggcaggtaaggaagagccgcaggtttcagagccattagcagtatcagtaagcccgacagggcctcccaaggcagggcatagaaggatgaaagataaaacttggaggctgaaaacagtaatatcgaagagatatgttcggaaattattccccaagtcaccatcaagggttgcagcaaatttcctcaatggaaggcagttggtaaccataaacaggaaaaaggaaggtgttttggcagggtcgttcatggtaaaccgggatacatctgacacggtcgtagaaatgttgaagtttgtgtttatgcagcggccactaactgcaaagatggcacggtatgataatgctactgttgcaaggtatggctatggtagcgtaaatcaggacgaccttgaagcttctcttgcaccagatggactagtttgtagccatatattcattccattgcgtgattcggctgggattggacattggtatatgttggtggttaaacctaaggctaaaactgctgagatagttgacagctaccttgaaaaagatgcggaagcaaggagggaacaatgggctactaatgcgttggtcatgttggacgtggtttttaagaatgaaattgtaggagcatgtattcagcgtgcactggtgttcaaagactttacaaaggtggaacccattgcaagtcccaggcaggagggagttgtgaactgtggggtttttctaatccggaatatgcagaactatggtcgtgattgggcaaagaagtatgtgttggaagaccatagagcttcccttgttatggaatgtatagggaacaaccgaaatgaggtcgagaatttggaggaaatgatggtggaatgcttgcacaatcttgagcaactaccaattctgcagttagacgaaatgaatgaaggaggagtggggaaacagaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

665

Amino Acids

74.56

Weight (kDa)

6.34

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 866, 893
Acc36I ACCTGC 2 cut(s) 1067, 1084
AccB7I CCANNNNNTGG 2 cut(s) 352, 774
AccII CGCG 1 cut(s) 1000
AccIII TCCGGA 1 cut(s) 1788
AciI CCGC 4 cut(s) 128, 1091, 1378, 1610
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 1 cut(s) 1379
AcsI RAATTY 2 cut(s) 1249, 1897
AfaI GTAC 3 cut(s) 219, 249, 954
AfiI CCNNNNNNNGG 8 cut(s) 352, 774, 930, 1145, 1146, 1284, 1861, 1888
AhlI ACTAGT 1 cut(s) 1486
AjiI CACGTC 1 cut(s) 1660
AjnI CCWGG 1 cut(s) 1748
AjuI GAANNNNNNNTTGG 2 cut(s) 1817, 1849
Alw21I GWGCWC 2 cut(s) 763, 1705
Alw26I GTCTC 1 cut(s) 324
Alw44I GTGCAC 1 cut(s) 1701
AlwI GGATC 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 1788
AoxI GGCC 2 cut(s) 1133, 1379
ApaLI GTGCAC 1 cut(s) 1701
ApeKI GCWGC 5 cut(s) 710, 713, 749, 1244, 1375
ApoI RAATTY 2 cut(s) 1249, 1897
ArsI GACNNNNNNTTYG 2 cut(s) 581, 613
Asp700I GAANNNNTTC 1 cut(s) 1217
AspS9I GGNCC 2 cut(s) 765, 1133
AsuC2I CCSGG 2 cut(s) 724, 1328
AsuHPI GGTGA 5 cut(s) 59, 286, 664, 800, 1221
AvaII GGWCC 1 cut(s) 765
AxyI CCTNAGG 1 cut(s) 1563
BaeGI GKGCMC 1 cut(s) 1705
BbsI GAAGAC 2 cut(s) 215, 1845
Bbv12I GWGCWC 2 cut(s) 763, 1705
BbvI GCAGC 5 cut(s) 697, 700, 736, 1256, 1387
BccI CCATC 9 cut(s) 188, 449, 598, 790, 1056, 1240, 1390, 1475, 1906
BciT130I CCWGG 1 cut(s) 1750
BciVI GTATCC 1 cut(s) 1324
BclI TGATCA 1 cut(s) 675
BcnI CCSGG 2 cut(s) 724, 1328
BcoDI GTCTC 1 cut(s) 324
BcuI ACTAGT 1 cut(s) 1486
BfaI CTAG 1 cut(s) 1487
BfmI CTRYAG 1 cut(s) 1952
BfuAI ACCTGC 2 cut(s) 1067, 1084
BfuI GTATCC 1 cut(s) 1324
BglII AGATCT 1 cut(s) 493
BisI GCNGC 7 cut(s) 711, 714, 750, 1091, 1245, 1376, 1379
BlsI GCNGC 7 cut(s) 712, 715, 751, 1092, 1246, 1377, 1380
BmcAI AGTACT 1 cut(s) 219
Bme1390I CCNGG 3 cut(s) 724, 1328, 1750
Bme18I GGWCC 1 cut(s) 765
BmgBI CACGTC 1 cut(s) 1660
BmgT120I GGNCC 2 cut(s) 765, 1133
BmiI GGNNCC 1 cut(s) 1734
BmrFI CCNGG 3 cut(s) 724, 1328, 1750
BmsI GCATC 2 cut(s) 526, 1597
BpiI GAAGAC 2 cut(s) 215, 1845
BpmI CTGGAG 1 cut(s) 866
BpuEI CTTGAG 1 cut(s) 1955
BpuMI CCSGG 2 cut(s) 724, 1328
BsaBI GATNNNNATC 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 3 cut(s) 624, 1140, 1748
BsaWI WCCGGW 1 cut(s) 1788
BsaXI ACNNNNNCTCC 2 cut(s) 1120, 1150
Bsc4I CCNNNNNNNGG 8 cut(s) 352, 774, 930, 1145, 1146, 1284, 1861, 1888
Bse1I ACTGG 1 cut(s) 1710
Bse21I CCTNAGG 1 cut(s) 1563
Bse3DI GCAATG 3 cut(s) 326, 1511, 1737
Bse8I GATNNNNATC 1 cut(s) 492
BseAI TCCGGA 1 cut(s) 1788
BseBI CCWGG 1 cut(s) 1750
BseDI CCNNGG 3 cut(s) 624, 1140, 1748
BseGI GGATG 5 cut(s) 199, 612, 939, 1067, 1164
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 8 cut(s) 352, 774, 930, 1145, 1146, 1284, 1861, 1888
BseMI GCAATG 3 cut(s) 326, 1511, 1737
BseMII CTCAG 1 cut(s) 1569
BseNI ACTGG 1 cut(s) 1710
BseRI GAGGAG 5 cut(s) 50, 53, 546, 821, 1992
BseSI GKGCMC 1 cut(s) 1705
BseXI GCAGC 5 cut(s) 697, 700, 736, 1256, 1387
BseYI CCCAGC 1 cut(s) 1526
Bsh1236I CGCG 1 cut(s) 1000
Bsh1285I CGRYCG 1 cut(s) 1347
BshFI GGCC 2 cut(s) 1135, 1381
BsiEI CGRYCG 1 cut(s) 1347
BsiHKAI GWGCWC 2 cut(s) 763, 1705
BsiSI CCGG 3 cut(s) 723, 1327, 1789
BslFI GGGAC 2 cut(s) 1079, 1731
BslI CCNNNNNNNGG 8 cut(s) 352, 774, 930, 1145, 1146, 1284, 1861, 1888
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 2 cut(s) 1079, 1731
BsmI GAATGC 2 cut(s) 751, 1925
BsnI GGCC 2 cut(s) 1135, 1381
Bso31I GGTCTC 1 cut(s) 324
Bsp1286I GDGCHC 2 cut(s) 763, 1705
Bsp13I TCCGGA 1 cut(s) 1788
Bsp1407I TGTACA 1 cut(s) 952
Bsp143I GATC 3 cut(s) 367, 493, 675
Bsp19I CCATGG 1 cut(s) 624
BspACI CCGC 4 cut(s) 128, 1091, 1378, 1610
BspANI GGCC 2 cut(s) 1135, 1381
BspCNI CTCAG 1 cut(s) 1570
BspEI TCCGGA 1 cut(s) 1788
BspFNI CGCG 1 cut(s) 1000
BspLI GGNNCC 1 cut(s) 1734
BspMAI CTGCAG 1 cut(s) 1956
BspMI ACCTGC 2 cut(s) 1067, 1084
BspPI GGATC 1 cut(s) 362
BspQI GCTCTTC 1 cut(s) 1080
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 3 cut(s) 326, 1511, 1737
BsrGI TGTACA 1 cut(s) 952
BsrI ACTGG 1 cut(s) 1710
BssECI CCNNGG 3 cut(s) 624, 1140, 1748
BssMI GATC 3 cut(s) 367, 493, 675
BssT1I CCWWGG 2 cut(s) 624, 1140
Bst2UI CCWGG 1 cut(s) 1750
Bst4CI ACNGT 8 cut(s) 231, 247, 925, 1189, 1345, 1404, 1420, 1772
Bst6I CTCTTC 3 cut(s) 476, 1080, 1193
BstAUI TGTACA 1 cut(s) 952
BstC8I GCNNGC 2 cut(s) 1701, 1925
BstDEI CTNAG 4 cut(s) 157, 221, 1563, 1578
BstDSI CCRYGG 1 cut(s) 624
BstEII GGTNACC 3 cut(s) 65, 652, 1273
BstF5I GGATG 5 cut(s) 199, 612, 939, 1067, 1164
BstFNI CGCG 1 cut(s) 1000
BstKTI GATC 3 cut(s) 370, 496, 678
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 3 cut(s) 367, 493, 675
BstMCI CGRYCG 1 cut(s) 1347
BstMWI GCNNNNNNNGC 8 cut(s) 749, 758, 1397, 1421, 1440, 1472, 1574, 1640
BstNI CCWGG 1 cut(s) 1750
BstNSI RCATGY 2 cut(s) 410, 1692
BstPI GGTNACC 3 cut(s) 65, 652, 1273
BstSCI CCNGG 3 cut(s) 722, 1326, 1748
BstSFI CTRYAG 1 cut(s) 1952
BstSLI GKGCMC 1 cut(s) 1705
BstUI CGCG 1 cut(s) 1000
BstV1I GCAGC 5 cut(s) 697, 700, 736, 1256, 1387
BstV2I GAAGAC 2 cut(s) 215, 1845
BstX2I RGATCY 2 cut(s) 367, 493
BstYI RGATCY 2 cut(s) 367, 493
Bsu36I CCTNAGG 1 cut(s) 1563
BsuI GTATCC 1 cut(s) 1324
BsuRI GGCC 2 cut(s) 1135, 1381
BtgI CCRYGG 1 cut(s) 624
BtgZI GCGATG 1 cut(s) 809
BtrI CACGTC 1 cut(s) 1660
BtsCI GGATG 5 cut(s) 199, 612, 939, 1067, 1164
BtsIMutI CAGTG 1 cut(s) 1703
BveI ACCTGC 2 cut(s) 1067, 1084
Cac8I GCNNGC 2 cut(s) 1701, 1925
Cfr13I GGNCC 2 cut(s) 765, 1133
Csp6I GTAC 3 cut(s) 218, 248, 953
CviAII CATG 9 cut(s) 395, 407, 625, 679, 737, 913, 1318, 1651, 1689
CviQI GTAC 3 cut(s) 218, 248, 953
DdeI CTNAG 4 cut(s) 157, 221, 1563, 1578
DpnI GATC 3 cut(s) 369, 495, 677
DpnII GATC 3 cut(s) 367, 493, 675
EaeI YGGCCR 1 cut(s) 1379
Eam1104I CTCTTC 3 cut(s) 476, 1080, 1193
EarI CTCTTC 3 cut(s) 476, 1080, 1193
Eco130I CCWWGG 2 cut(s) 624, 1140
Eco31I GGTCTC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 765
Eco81I CCTNAGG 1 cut(s) 1563
Eco91I GGTNACC 3 cut(s) 65, 652, 1273
EcoO109I RGGNCCY 1 cut(s) 1133
EcoO65I GGTNACC 3 cut(s) 65, 652, 1273
EcoRII CCWGG 1 cut(s) 1748
EcoT14I CCWWGG 2 cut(s) 624, 1140
ErhI CCWWGG 2 cut(s) 624, 1140
FaeI CATG 9 cut(s) 398, 410, 628, 682, 740, 916, 1321, 1654, 1692
FalI AAGNNNNNCTT 2 cut(s) 1455, 1487
FaqI GGGAC 2 cut(s) 1079, 1731
FatI CATG 9 cut(s) 394, 406, 624, 678, 736, 912, 1317, 1650, 1688
FauI CCCGC 1 cut(s) 121
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 7 cut(s) 711, 714, 750, 1091, 1245, 1376, 1379
FokI GGATG 5 cut(s) 206, 599, 946, 1074, 1171
Fsp4HI GCNGC 7 cut(s) 711, 714, 750, 1091, 1245, 1376, 1379
FspBI CTAG 1 cut(s) 1487
GluI GCNGC 7 cut(s) 711, 714, 750, 1091, 1245, 1376, 1379
GsaI CCCAGC 1 cut(s) 1530
GsuI CTGGAG 1 cut(s) 866
HaeIII GGCC 2 cut(s) 1135, 1381
HapII CCGG 3 cut(s) 723, 1327, 1789
Hin1II CATG 9 cut(s) 398, 410, 628, 682, 740, 916, 1321, 1654, 1692
HincII GTYRAC 4 cut(s) 10, 928, 1043, 1588
HindII GTYRAC 4 cut(s) 10, 928, 1043, 1588
HindIII AAGCTT 1 cut(s) 1464
HinfI GANTC 3 cut(s) 134, 444, 1520
HpaI GTTAAC 1 cut(s) 10
HpaII CCGG 3 cut(s) 723, 1327, 1789
HphI GGTGA 5 cut(s) 59, 286, 664, 800, 1221
Hpy188I TCNGA 6 cut(s) 309, 435, 669, 1102, 1212, 1339
Hpy188III TCNNGA 7 cut(s) 601, 1059, 1451, 1789, 1811, 1894, 1934
Hpy99I CGWCG 1 cut(s) 1060
HpyCH4III ACNGT 8 cut(s) 231, 247, 925, 1189, 1345, 1404, 1420, 1772
HpyCH4IV ACGT 2 cut(s) 1055, 1659
HpyF10VI GCNNNNNNNGC 8 cut(s) 749, 758, 1397, 1421, 1440, 1472, 1574, 1640
HpyF3I CTNAG 4 cut(s) 157, 221, 1563, 1578
HpySE526I ACGT 2 cut(s) 1055, 1659
Hsp92II CATG 9 cut(s) 398, 410, 628, 682, 740, 916, 1321, 1654, 1692
Kpn2I TCCGGA 1 cut(s) 1788
Ksp22I TGATCA 1 cut(s) 675
KspAI GTTAAC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 367, 493, 675
LguI GCTCTTC 1 cut(s) 1080
LmnI GCTCC 3 cut(s) 403, 740, 1685
Lsp1109I GCAGC 5 cut(s) 697, 700, 736, 1256, 1387
LweI GCATC 2 cut(s) 526, 1597
MaeI CTAG 1 cut(s) 1487
MaeII ACGT 2 cut(s) 1055, 1659
MaeIII GTNAC 7 cut(s) 65, 274, 652, 982, 1017, 1227, 1273
MalI GATC 3 cut(s) 369, 495, 677
MboI GATC 3 cut(s) 367, 493, 675
MboII GAAGA 7 cut(s) 129, 220, 493, 503, 1097, 1210, 1850
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 2 cut(s) 367, 493
MhlI GDGCHC 2 cut(s) 763, 1705
MmeI TCCRAC 2 cut(s) 1635, 1815
MroI TCCGGA 1 cut(s) 1788
MroXI GAANNNNTTC 1 cut(s) 1217
MseI TTAA 6 cut(s) 9, 237, 264, 840, 1557, 1668
MslI CAYNNNNRTG 2 cut(s) 26, 683
MspA1I CMGCKG 2 cut(s) 823, 1378
MspI CCGG 3 cut(s) 723, 1327, 1789
MspR9I CCNGG 3 cut(s) 724, 1328, 1750
MunI CAATTG 1 cut(s) 801
Mva1269I GAATGC 2 cut(s) 751, 1925
MvaI CCWGG 1 cut(s) 1750
MvnI CGCG 1 cut(s) 1000
MwoI GCNNNNNNNGC 8 cut(s) 749, 758, 1397, 1421, 1440, 1472, 1574, 1640
NciI CCSGG 2 cut(s) 724, 1328
NcoI CCATGG 1 cut(s) 624
NdeII GATC 3 cut(s) 367, 493, 675
NlaIII CATG 9 cut(s) 398, 410, 628, 682, 740, 916, 1321, 1654, 1692
NlaIV GGNNCC 1 cut(s) 1734
NmuCI GTSAC 4 cut(s) 65, 274, 652, 1227
NspI RCATGY 2 cut(s) 410, 1692
PciSI GCTCTTC 1 cut(s) 1080
PctI GAATGC 2 cut(s) 751, 1925
PdmI GAANNNNTTC 1 cut(s) 1217
PfeI GAWTC 3 cut(s) 134, 444, 1520
PflFI GACNNNGTC 1 cut(s) 1343
PflMI CCANNNNNTGG 2 cut(s) 352, 774
PfoI TCCNGGA 1 cut(s) 722
PkrI GCNGC 7 cut(s) 712, 715, 751, 1092, 1246, 1377, 1380
PsiI TTATAA 2 cut(s) 866, 893
Psp6I CCWGG 1 cut(s) 1748
PspEI GGTNACC 3 cut(s) 65, 652, 1273
PspFI CCCAGC 1 cut(s) 1526
PspGI CCWGG 1 cut(s) 1748
PspN4I GGNNCC 1 cut(s) 1734
PspPI GGNCC 2 cut(s) 765, 1133
PstI CTGCAG 1 cut(s) 1956
PsuI RGATCY 2 cut(s) 367, 493
PsyI GACNNNGTC 1 cut(s) 1343
PvuII CAGCTG 1 cut(s) 823
RsaI GTAC 3 cut(s) 219, 249, 954
RsaNI GTAC 3 cut(s) 218, 248, 953
RseI CAYNNNNRTG 2 cut(s) 26, 683
SapI GCTCTTC 1 cut(s) 1080
SaqAI TTAA 6 cut(s) 9, 237, 264, 840, 1557, 1668
SatI GCNGC 7 cut(s) 711, 714, 750, 1091, 1245, 1376, 1379
Sau3AI GATC 3 cut(s) 367, 493, 675
Sau96I GGNCC 2 cut(s) 765, 1133
ScaI AGTACT 1 cut(s) 219
ScrFI CCNGG 3 cut(s) 724, 1328, 1750
SduI GDGCHC 2 cut(s) 763, 1705
SfaNI GCATC 2 cut(s) 526, 1597
SfcI CTRYAG 1 cut(s) 1952
SinI GGWCC 1 cut(s) 765
SmiMI CAYNNNNRTG 2 cut(s) 26, 683
SmlI CTYRAG 1 cut(s) 1934
SmoI CTYRAG 1 cut(s) 1934
SpeI ACTAGT 1 cut(s) 1486
SsiI CCGC 4 cut(s) 128, 1091, 1378, 1610
SspMI CTAG 1 cut(s) 1487
StyD4I CCNGG 3 cut(s) 722, 1326, 1748
StyI CCWWGG 2 cut(s) 624, 1140
TaaI ACNGT 8 cut(s) 231, 247, 925, 1189, 1345, 1404, 1420, 1772
TaiI ACGT 2 cut(s) 1058, 1662
TaqI TCGA 3 cut(s) 24, 1196, 1893
TatI WGTACW 2 cut(s) 217, 952
TauI GCSGC 2 cut(s) 1093, 1381
TfiI GAWTC 3 cut(s) 134, 444, 1520
Tru1I TTAA 6 cut(s) 9, 237, 264, 840, 1557, 1668
Tru9I TTAA 6 cut(s) 9, 237, 264, 840, 1557, 1668
TscAI CASTG 1 cut(s) 1710
TseFI GTSAC 4 cut(s) 65, 274, 652, 1227
TseI GCWGC 5 cut(s) 710, 713, 749, 1244, 1375
Tsp45I GTSAC 4 cut(s) 65, 274, 652, 1227
TspGWI ACGGA 2 cut(s) 360, 778
TspRI CASTG 1 cut(s) 1710
Tth111I GACNNNGTC 1 cut(s) 1343
Van91I CCANNNNNTGG 2 cut(s) 352, 774
VneI GTGCAC 1 cut(s) 1701
VpaK11BI GGWCC 1 cut(s) 765
XapI RAATTY 2 cut(s) 1249, 1897
XceI RCATGY 2 cut(s) 410, 1692
XmnI GAANNNNTTC 1 cut(s) 1217
XspI CTAG 1 cut(s) 1487
ZrmI AGTACT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.