Rh2BG319800

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008183
Physical Location & Seq
Forward (+)
38232344 .. 38232898
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG319800.1

Sequence Viewer

Length: 555 bp
ATGGTGGAGGGGTTGGATCATTTAAATGAAGTTGTTAACATACATGGACAACAGCATGTCATATCGACAAAGGACTTTGATCGGATAATGGGAATCAACGATGGTGGAAGTGATATAGAGTTGAGTGGGAAGAGTGATGATGATCTCGTCAACAAGTTCAAACTACATTTGGCGGGGGGAGGACATGCTATCATAATAGCAACATTGAAAGGAAGGAATGAAGCTGACAATTTGTTCTTGAAGGGTTTCATCCTTTATGTCATGGCAACACTGTTGTGTCCGATAGGAGGCGAAGAAGTAGAGTCTACATTGTTGTTTACTCTTATGGATACGTGCTATATAAATTCCCAGAATTGGGTGACCTATGCTTATCAGAAGTTGATAATGGGTGTGTTGATGTTCAAATCAGGCAAAGCTGATGCATTATCCGGATTTATGTTATTCCTACAAGTGTTCTACTTTGATTTAGTGAACAAAATGTGCGGATGGGTGGATAAGAATGCAAGACCATTGTGTGAATGGGGAGATGATCAAGTATTTAAACTGTTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

184

Amino Acids

20.59

Weight (kDa)

5.12

Isoelectric Point (pI)

22.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 305
AccIII TCCGGA 1 cut(s) 428
AciI CCGC 2 cut(s) 173, 483
AclWI GGATC 1 cut(s) 24
AcsI RAATTY 1 cut(s) 343
AfiI CCNNNNNNNGG 3 cut(s) 287, 354, 355
AgsI TTSAA 4 cut(s) 160, 208, 241, 403
AleI CACNNNNGTG 1 cut(s) 274
AluBI AGCT 2 cut(s) 224, 416
AluI AGCT 2 cut(s) 224, 416
AlwI GGATC 1 cut(s) 24
Aor13HI TCCGGA 1 cut(s) 428
ApoI RAATTY 1 cut(s) 343
Asp700I GAANNNNTTC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 370
BccI CCATC 2 cut(s) 95, 480
BciVI GTATCC 1 cut(s) 322
BclI TGATCA 1 cut(s) 529
BfuI GTATCC 1 cut(s) 322
BmsI GCATC 1 cut(s) 409
BsaAI YACGTR 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 428
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 354, 355
Bse8I GATNNNNATC 1 cut(s) 141
BseAI TCCGGA 1 cut(s) 428
BseGI GGATG 2 cut(s) 249, 491
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 3 cut(s) 287, 354, 355
BsiSI CCGG 1 cut(s) 429
BslI CCNNNNNNNGG 3 cut(s) 287, 354, 355
BsmI GAATGC 1 cut(s) 505
Bsp13I TCCGGA 1 cut(s) 428
Bsp143I GATC 4 cut(s) 16, 79, 142, 529
BspACI CCGC 2 cut(s) 173, 483
BspEI TCCGGA 1 cut(s) 428
BspPI GGATC 1 cut(s) 24
BssMI GATC 4 cut(s) 16, 79, 142, 529
Bst4CI ACNGT 2 cut(s) 273, 546
Bst6I CTCTTC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 333
BstEII GGTNACC 1 cut(s) 358
BstF5I GGATG 2 cut(s) 249, 491
BstKTI GATC 4 cut(s) 19, 82, 145, 532
BstMBI GATC 4 cut(s) 16, 79, 142, 529
BstNSI RCATGY 2 cut(s) 59, 188
BstPI GGTNACC 1 cut(s) 358
BsuI GTATCC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 249, 491
BtsIMutI CAGTG 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 4 cut(s) 44, 56, 185, 262
CviJI RGCY 2 cut(s) 224, 416
CviKI_1 RGCY 2 cut(s) 224, 416
DpnI GATC 4 cut(s) 18, 81, 144, 531
DpnII GATC 4 cut(s) 16, 79, 142, 529
DraI TTTAAA 2 cut(s) 24, 541
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco91I GGTNACC 1 cut(s) 358
EcoO65I GGTNACC 1 cut(s) 358
EcoT22I ATGCAT 1 cut(s) 424
FaeI CATG 4 cut(s) 47, 59, 188, 265
FatI CATG 4 cut(s) 43, 55, 184, 261
FauI CCCGC 1 cut(s) 166
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 305
FokI GGATG 2 cut(s) 236, 498
HapII CCGG 1 cut(s) 429
Hin1II CATG 4 cut(s) 47, 59, 188, 265
HincII GTYRAC 2 cut(s) 37, 151
HindII GTYRAC 2 cut(s) 37, 151
HinfI GANTC 2 cut(s) 93, 302
HpaI GTTAAC 1 cut(s) 37
HpaII CCGG 1 cut(s) 429
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 5 cut(s) 37, 151, 306, 318, 472
Hpy188I TCNGA 3 cut(s) 84, 282, 375
Hpy188III TCNNGA 2 cut(s) 238, 429
Hpy8I GTNNAC 5 cut(s) 37, 151, 306, 318, 472
HpyAV CCTTC 2 cut(s) 207, 235
HpyCH4III ACNGT 2 cut(s) 273, 546
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 422, 503
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 4 cut(s) 47, 59, 188, 265
Kpn2I TCCGGA 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 529
KspAI GTTAAC 1 cut(s) 37
Kzo9I GATC 4 cut(s) 16, 79, 142, 529
LpnPI CCDG 3 cut(s) 362, 393, 442
LweI GCATC 1 cut(s) 409
MaeII ACGT 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 358
MalI GATC 4 cut(s) 18, 81, 144, 531
MboI GATC 4 cut(s) 16, 79, 142, 529
MboII GAAGA 2 cut(s) 142, 305
MluCI AATT 3 cut(s) 229, 343, 352
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 2 cut(s) 173, 281
Mph1103I ATGCAT 1 cut(s) 424
MroI TCCGGA 1 cut(s) 428
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 4 cut(s) 23, 36, 540, 548
MslI CAYNNNNRTG 2 cut(s) 24, 274
MspI CCGG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 505
NdeII GATC 4 cut(s) 16, 79, 142, 529
NlaIII CATG 4 cut(s) 47, 59, 188, 265
NmuCI GTSAC 1 cut(s) 358
NsiI ATGCAT 1 cut(s) 424
NspI RCATGY 2 cut(s) 59, 188
OliI CACNNNNGTG 1 cut(s) 274
PctI GAATGC 1 cut(s) 505
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 93
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Ppu21I YACGTR 1 cut(s) 333
PspEI GGTNACC 1 cut(s) 358
RseI CAYNNNNRTG 2 cut(s) 24, 274
SaqAI TTAA 4 cut(s) 23, 36, 540, 548
Sau3AI GATC 4 cut(s) 16, 79, 142, 529
SchI GAGTC 1 cut(s) 311
SetI ASST 4 cut(s) 226, 335, 365, 418
SfaNI GCATC 1 cut(s) 409
SmiI ATTTAAAT 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 24, 274
Sse9I AATT 3 cut(s) 229, 343, 352
SsiI CCGC 2 cut(s) 173, 483
SwaI ATTTAAAT 1 cut(s) 24
TaaI ACNGT 2 cut(s) 273, 546
TaiI ACGT 1 cut(s) 335
TaqI TCGA 1 cut(s) 65
TasI AATT 3 cut(s) 229, 343, 352
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 4 cut(s) 23, 36, 540, 548
Tru9I TTAA 4 cut(s) 23, 36, 540, 548
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 3 cut(s) 42, 234, 238
TspRI CASTG 1 cut(s) 276
XapI RAATTY 1 cut(s) 343
XceI RCATGY 2 cut(s) 59, 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 516
XmiI GTMKAC 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.