Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008183

Physical Location & Seq

Genomic Coordinates Forward (+)

28824129 .. 28828143

Gene Structure 4015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG144000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGATACATGGAGTGAATGCTGCTAAAAGGGAAGGGACCGATAAGTGGGAAAGAGGCGGGGAGACGATGGCAGTTGAGAAGGAAGTTGAACAACTGAAAATGGGTTTTGTTAAGTTGGAGGAAGCTGTTGTTGTTATAATGCCAGAAATAGCTACCATGAAGGAAGCCGTTGAGAGGATGAGTAGGTTGGTCGGTGTGCACGACAGGGAGCGAAGTGAACACATTGTATCACAGGTGGTGAGTCGACTAAATGATGGAGGTGGAAATAACTTTGATGAGGAAAAAAACAAAAACAAAAACAAAAACATTTCGACCTCACAGAAATGTGATAAAGGTGTAGACTCAACACAGTTCAATCATGGAAGGGAACGCGAGGAAGGTTCGGGGAGTTACTCATTGAAGTTCCTATATGTGAATAAAGGCGAACGTCGGGATGGGATAAGAAAGCAGCTGCATGATCTCTGTACGGAAGGCAAGGGAGAGCTACAGGTTTCAGATATATCAGCAGTATCAGTAAGTCCGATAGGGCCTCCCAAGGAAGCTCATAGAAGGACGAAAGAAAAAACTCGGAGGCCGAAAAAAGTAATATTGAAGAGATATGTTCGGAGATTATTCACTAAGTTACCATCAAGGATTGCTGCAAATTTTCTCCATGGAAAGCAAAGGGTAACCATAGACAGGAAAAAGGAAGGTGTTTTGGCAAGGCCGTTCATGGTAAACCGGGATACATCTAACACGGTTGTAGAAATGTTGAAGTTTGTGTTTATGCCGAGGCCACTAACTGCGAAGATGGCACGGTGTGTCAAGAAAGTTGTTAATGATATGTGTTCAAATCTAAGAAACATAATAAATGACATATATAGTGACATGATATTTGGTATTCCATGTTCTTCACAGTATGTGTCGGAAGACCACAGAGCTTCCCTTATTATGGAATGTATAGGGAACAACCAAATCGAGGTCGACAATTTGGAGGAAATGATGGTGGAATGCTTGCACAATCTTGAGCAACTACCAATTCTGCAGTTAGACGAAAAGAATGAAGGAGGAATGGGGAAACCGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

40.37

Weight (kDa)

9.1

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008183)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008746
rosa_multiflora	Rmu_sc0000317.1_g000007 Rmu_sc0000894.1_g000063 Rmu_sc0002051.1_g000006 Rmu_sc0032513.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350860
rosa_samantha	Rh2AG311500 Rh2AG311600 Rh2AG311700 Rh2BG319800 Rh2BG319900 Rh2BG394500 Rh2CG298700 Rh2DG336000 Rh3BG265100 Rh4BG133100 Rh4BG133200 Rh4BG146300 Rh4BG146400 Rh4CG143900 Rh4CG144000 Rh6DG199500
rosa_wichuraiana	Rw0G013210 Rw2G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AccI	GTMKAC	3 cut(s)	244, 339, 963
AccII	CGCG	1 cut(s)	372
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	643
AdeI	CACNNNGTG	1 cut(s)	800
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	5 cut(s)	45, 174, 678, 931, 958
AgsI	TTSAA	6 cut(s)	89, 355, 400, 592, 754, 831
AluBI	AGCT	6 cut(s)	125, 152, 451, 484, 542, 920
AluI	AGCT	6 cut(s)	125, 152, 451, 484, 542, 920
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	56
Alw44I	GTGCAC	1 cut(s)	197
AoxI	GGCC	4 cut(s)	527, 572, 704, 773
ApaLI	GTGCAC	1 cut(s)	197
ApeKI	GCWGC	4 cut(s)	20, 448, 451, 638
ApoI	RAATTY	1 cut(s)	643
ArsI	GACNNNNNNTTYG	2 cut(s)	857, 889
AspS9I	GGNCC	2 cut(s)	36, 527
AsuC2I	CCSGG	1 cut(s)	722
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	915
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	4 cut(s)	7, 438, 460, 625
BccI	CCATC	6 cut(s)	61, 248, 428, 634, 784, 976
BceAI	ACGGC	2 cut(s)	152, 691
BciVI	GTATCC	1 cut(s)	718
BcnI	CCSGG	1 cut(s)	722
BcoDI	GTCTC	1 cut(s)	56
BfmI	CTRYAG	2 cut(s)	485, 1022
BfuI	GTATCC	1 cut(s)	718
BisI	GCNGC	4 cut(s)	21, 449, 452, 639
BlsI	GCNGC	4 cut(s)	22, 450, 453, 640
Bme1390I	CCNGG	1 cut(s)	722
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	36, 527
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	1025
BpuMI	CCSGG	1 cut(s)	722
BsaJI	CCNNGG	3 cut(s)	534, 652, 770
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 174, 678, 931, 958
BseDI	CCNNGG	3 cut(s)	534, 652, 770
BseGI	GGATG	2 cut(s)	183, 439
BseLI	CCNNNNNNNGG	5 cut(s)	45, 174, 678, 931, 958
BseSI	GKGCMC	1 cut(s)	201
BseXI	GCAGC	4 cut(s)	7, 438, 460, 625
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	4 cut(s)	529, 574, 706, 775
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	721
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	5 cut(s)	45, 174, 678, 931, 958
BsmAI	GTCTC	1 cut(s)	56
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	49
BsmI	GAATGC	2 cut(s)	22, 995
BsnI	GGCC	4 cut(s)	529, 574, 706, 775
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	457
Bsp19I	CCATGG	1 cut(s)	652
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	4 cut(s)	529, 574, 706, 775
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	1026
BssECI	CCNNGG	3 cut(s)	534, 652, 770
BssMI	GATC	1 cut(s)	457
BssT1I	CCWWGG	2 cut(s)	534, 652
Bst4CI	ACNGT	4 cut(s)	351, 739, 798, 897
Bst6I	CTCTTC	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	995
BstDEI	CTNAG	2 cut(s)	618, 836
BstDSI	CCRYGG	1 cut(s)	652
BstEII	GGTNACC	1 cut(s)	667
BstF5I	GGATG	2 cut(s)	183, 439
BstFNI	CGCG	1 cut(s)	372
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	791
BstPI	GGTNACC	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	720
BstSFI	CTRYAG	2 cut(s)	485, 1022
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	4 cut(s)	7, 438, 460, 625
BstV2I	GAAGAC	1 cut(s)	915
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	4 cut(s)	529, 574, 706, 775
BtgI	CCRYGG	1 cut(s)	652
BtsCI	GGATG	2 cut(s)	183, 439
Cac8I	GCNNGC	1 cut(s)	995
Cfr13I	GGNCC	2 cut(s)	36, 527
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	8 cut(s)	8, 157, 359, 455, 653, 712, 868, 885
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	2 cut(s)	618, 836
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
DraIII	CACNNNGTG	1 cut(s)	800
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
Eco130I	CCWWGG	2 cut(s)	534, 652
Eco47I	GGWCC	1 cut(s)	36
Eco91I	GGTNACC	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	527
EcoO65I	GGTNACC	1 cut(s)	667
EcoT14I	CCWWGG	2 cut(s)	534, 652
ErhI	CCWWGG	2 cut(s)	534, 652
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	8 cut(s)	11, 160, 362, 458, 656, 715, 871, 888
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	8 cut(s)	7, 156, 358, 454, 652, 711, 867, 884
FauI	CCCGC	1 cut(s)	50
FblI	GTMKAC	3 cut(s)	244, 339, 963
Fnu4HI	GCNGC	4 cut(s)	21, 449, 452, 639
FokI	GGATG	2 cut(s)	190, 446
Fsp4HI	GCNGC	4 cut(s)	21, 449, 452, 639
GluI	GCNGC	4 cut(s)	21, 449, 452, 639
HaeIII	GGCC	4 cut(s)	529, 574, 706, 775
HapII	CCGG	1 cut(s)	721
Hin1II	CATG	8 cut(s)	11, 160, 362, 458, 656, 715, 871, 888
HincII	GTYRAC	2 cut(s)	245, 964
HindII	GTYRAC	2 cut(s)	245, 964
HinfI	GANTC	2 cut(s)	241, 341
HpaII	CCGG	1 cut(s)	721
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	6 cut(s)	199, 218, 245, 340, 718, 964
Hpy188I	TCNGA	5 cut(s)	496, 522, 570, 606, 907
Hpy188III	TCNNGA	3 cut(s)	431, 805, 1004
Hpy8I	GTNNAC	6 cut(s)	199, 218, 245, 340, 718, 964
Hpy99I	CGWCG	1 cut(s)	432
HpyAV	CCTTC	9 cut(s)	26, 73, 154, 357, 371, 464, 543, 683, 1037
HpyCH4III	ACNGT	4 cut(s)	351, 739, 798, 897
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	199, 454, 641, 997, 1024
HpyF10VI	GCNNNNNNNGC	1 cut(s)	791
HpyF3I	CTNAG	2 cut(s)	618, 836
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	8 cut(s)	11, 160, 362, 458, 656, 715, 871, 888
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	6 cut(s)	156, 190, 218, 473, 664, 734
Lsp1109I	GCAGC	4 cut(s)	7, 438, 460, 625
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	4 cut(s)	389, 621, 667, 863
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	604, 799, 882, 920
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	4 cut(s)	643, 967, 1017, 1063
MlyI	GAGTC	2 cut(s)	250, 335
MmeI	TCCRAC	2 cut(s)	96, 885
MseI	TTAA	2 cut(s)	111, 816
MslI	CAYNNNNRTG	1 cut(s)	322
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	1 cut(s)	721
MspR9I	CCNGG	1 cut(s)	722
Mva1269I	GAATGC	2 cut(s)	22, 995
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	791
NciI	CCSGG	1 cut(s)	722
NcoI	CCATGG	1 cut(s)	652
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	8 cut(s)	11, 160, 362, 458, 656, 715, 871, 888
NlaIV	GGNNCC	1 cut(s)	37
NmeAIII	GCCGAG	1 cut(s)	795
NmuCI	GTSAC	1 cut(s)	863
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	2 cut(s)	22, 995
PkrI	GCNGC	4 cut(s)	22, 450, 453, 640
PleI	GAGTC	2 cut(s)	249, 335
PpsI	GAGTC	2 cut(s)	249, 335
PsiI	TTATAA	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	667
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	36, 527
PsrI	GAACNNNNNNTAC	2 cut(s)	871, 903
PstI	CTGCAG	1 cut(s)	1026
PvuII	CAGCTG	1 cut(s)	451
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
RseI	CAYNNNNRTG	1 cut(s)	322
SalI	GTCGAC	2 cut(s)	243, 962
SaqAI	TTAA	2 cut(s)	111, 816
SatI	GCNGC	4 cut(s)	21, 449, 452, 639
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	2 cut(s)	36, 527
SchI	GAGTC	2 cut(s)	250, 335
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	1 cut(s)	201
SfcI	CTRYAG	2 cut(s)	485, 1022
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
Sse9I	AATT	4 cut(s)	643, 967, 1017, 1063
SsiI	CCGC	1 cut(s)	57
SspI	AATATT	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	2 cut(s)	534, 652
TaaI	ACNGT	4 cut(s)	351, 739, 798, 897
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	4 cut(s)	244, 311, 957, 963
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	4 cut(s)	643, 967, 1017, 1063
Tru1I	TTAA	2 cut(s)	111, 816
Tru9I	TTAA	2 cut(s)	111, 816
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	4 cut(s)	20, 448, 451, 638
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	3 cut(s)	173, 700, 1056
TspGWI	ACGGA	1 cut(s)	482
VneI	GTGCAC	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	643
XmiI	GTMKAC	3 cut(s)	244, 339, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.