Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004215

Physical Location & Seq

Genomic Coordinates Forward (+)

29545541 .. 29555447

Gene Structure 9907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018420

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2508 bp

ATGGCTTCCATTGGCATAGCTATCCTTCTCTTCTCACTATATTCTCTATGTGAAGGAGCTCAACAAAACAACGATTCTGGCCACGTAGGCCTGGGATCTTCACTCTCTCCAGAAACTCGCCCCAGCTCATGGCCTTCTGCCTCTGGCCAGTTCGAATTCGGGTTTTATCAGCAAGGAAGTGGTTTCGCGGTTGGAATTTGGTTGGTGGGAGTAGACCAAAACACAACTGTATGGACAGCAAACCGTGATGATCCCCCACTGCTGCCCTCACAAAATAATACAGTGCAGCTGCAGTTAGCCAATGATGGCATGCTTGTTCTAACCAGTGACCAAGGTCATAAAAAAGTAGTCATCGCAAGTGCAACAAACGGTTCTGTTTCCTCTGCCTCCATGCTTGATTCTGGAAACTTCGTTCTTTACGATGAAAACAATACAGTGATCTGGGAGAGTTTCAGTCATCCTACTGATACTATCCTGGGTGGTCAGACTCTGCCGGTTGGGGGTCAATTAGTCTCCAGTTTGTCCGATGCTGACCACTCAACAGGACATTTTCATCTCAACATGCAGCCTGACGGAAACCTTGTTCTGTACCCAGCAAACTCTGAAAACTCTCCAGTAGATGCCTACTATGCTTCAGATACTAATGGGATCTTGAACCTTCACCTCTATCTTAACAGGACAGATGGCAGTCTTGCTCTAATCAACACCACCGGCTCGAAAGTTTCCAATGTCTATGGTGGTAATGATGATCTAGCCAATAACACTGTATATCGGGCAACTGTTGGCGTGAACGGAGTATTAAGGGTGTATTCTCATCAGATGGATCCTCCCAAAGGCAAATTCAAAGCACCTGTTATTTTGTGCTCCAAACCAGATGATCCTTGCGATGTTAAAGGCGTGTGTGGCCTTAACAGCTATTGCACACTCAATGATGGCCAACCAGATTGTCATTGCCTCCCTGGATCAGATTACGCTGACCCCAACAGCATGACTATGGGTTGCTTGAGAAACTATTCAGAACCGGCATGTGCAGCTGGCGGGAAAGGGAATACAACCTTTTATGACATAGTCACCGTGGAAAATATGGCCTGCCTAGATACTCCTGACTTTGAAGCCACAATGACCATGGAAGAATGCAACAGATCTTGTCTAGAGGACTGCAATTGTGGAGCAGCTCTGTTCGAGGAGAAAAATTGTAAGAAACAGAAGCCACCACTCAGATATGTGAGAAGAGATCTGCAGATATCCAACACAGCTTTCTTCAAGGTAAGCAAGTTAACAACAAGTCCTGAAAGCAAGAATAATAGAACTGAAACTAAAGAACCATTTCAGATGAATCCCGCTACGGTTGTTGTCAGAAGCAAGAAAGTCATTGTGCAAATTCTTGTTTTAACGTTAGGTCTCATTCTCTTCTCATGTGTTGCGCTTGCAATATCTGGATTTTACATTTTCAAAATTCGAGTTCTGAGGTACGAAAGGCTGACAGAGGTTAATGGGAATCTGGGGCTGGCTGATGAGGAACTCACTATGAGAGTTTTTTCATACAACGAGCTGAAAAGGGCTACAAATGGTTTCAAACAAGAATTGGGGAAGGGCTCCTTCGGAGCAGTTTACAAAGGGGCTCTAAATAGAGGGAAAAAACTCATCGCAGTGAAAAGACTAGAGAAGCTGGTGGAAGAAGGTGAGAGGGAGTTTCGAGCGGAGATGCAAGCGATTGGAAGAACTCATCACAAGAACTTAGTTCGATTGCTGGGTTACTCTGCTGAGGACTCGAAAAGGCTCCTGGTCTATGAATATATGAGCAATGGCTCCCTTGCAGATCTTCTTTTTAAGAAAGAATGGCATCCAGCTTGGGATGAAAGAGTGAGAATTGCAGTTGATGTCGCAAGAGGTCTCCTCTATCTCCATGAAGAATGCAAGTCCCCTATCATTCATTGCGACATAAAGCCTCAAAACATTCTGATGGATGATTTTTGGAATGCAAAAATCGCTGATTTTGGACTTGCAAAACTGCTAACGCCGGATCAAACAAGGACCTTCACAGGGATAAGAGGGACAAGAGGGTATTTGGCACCAGAATGGCAAAAGAACACTCCAATCTCAGTGAAGGCAGATATCTACAGTTTTGGTATAGTGCTTCTTGAACTTGTGTGTTGCAGGAGGAATTTGGACGTCAGTGTTAGAGCAGAGGAGATAGTTCTTTCTACTTGGGTTTATCAGTGCTTTGTCAGTAGAGAGCTGCATAAGCTTATTGTGGGTGGCGAAGAAGTGAACAAGAAGAGCTTGGAGAATATGGTTAAGGTGGGATTATGGTGTATACAAGATGAACCAGCTCTGCGTCCATCAATGAAAATGTCCGTTGCCATGTCCAATTGGGATCCAATAGCCTCAACATCATCACCTGCACCTGTTTCTGCTGGAGACTACCTTGAGAGGCCGAAATTCAGTCACATGCATTCCAGATTTCAGAAGCCTGACAATGTATCGAATAGAACAAGTAGCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

836

Amino Acids

92.13

Weight (kDa)

6.15

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	75 - 164	1.4e-17	D-mannose binding lectin
PK_Tyr_Ser-Thr	PF07714	525 - 784	3.4e-43	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	526 - 786	1.1e-47	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004215)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23400
prunus_persica	Prupe.6G165300_v2.0.a1 Prupe.6G165500_v2.0.a1 Prupe.6G165500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118691 RchiOBHm_Chr2g0118751 RchiOBHm_Chr2g0118771
rosa_laevigata	RLG00000018420
rosa_multiflora	Rmu_co8322425.1_g000001 Rmu_sc0001814.1_g000023 Rmu_sc0001814.1_g000024 Rmu_sc0001814.1_g000031 Rmu_sc0002831.1_g000032 Rmu_sc0003564.1_g000001 Rmu_sc0004345.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124740 Rroxscaffold_2G00124750 Rroxscaffold_2G00124840 Rroxscaffold_2G00124870 Rroxscaffold_2G00124880 Rroxscaffold_2G00125530
rosa_rugosa	Rorug02G0218500
rosa_samantha	Rh2AG274800 Rh2AG275100 Rh2AG275400 Rh2BG286900 Rh2BG287300 Rh2DG282600 Rh2DG301600 Rh2DG301800
rosa_wichuraiana	Rw2G021860 Rw2G021880 Rw2G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2410
AatII	GACGTC	1 cut(s)	2175
Acc36I	ACCTGC	1 cut(s)	2410
AccB1I	GGYRCC	1 cut(s)	2071
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	1700
AccI	GTMKAC	2 cut(s)	213, 2317
AccII	CGCG	1 cut(s)	188
AciI	CCGC	4 cut(s)	188, 1038, 1341, 1700
AclI	AACGTT	1 cut(s)	1394
AcoI	YGGCCR	3 cut(s)	79, 145, 934
AcsI	RAATTY	7 cut(s)	155, 195, 839, 1380, 1455, 2164, 2441
AcuI	CTGAAG	1 cut(s)	618
AcyI	GRCGYC	1 cut(s)	2172
AfaI	GTAC	2 cut(s)	590, 1472
AfiI	CCNNNNNNNGG	4 cut(s)	129, 500, 833, 2043
AgsI	TTSAA	7 cut(s)	655, 844, 1112, 1264, 1453, 1576, 2144
AjnI	CCWGG	4 cut(s)	90, 474, 958, 1782
AjuI	GAANNNNNNNTTGG	4 cut(s)	824, 856, 1241, 1273
AloI	GAACNNNNNNTCC	4 cut(s)	396, 428, 567, 599
Alw21I	GWGCWC	2 cut(s)	61, 866
Alw26I	GTCTC	4 cut(s)	517, 1406, 1898, 2415
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	8 cut(s)	79, 88, 131, 145, 904, 934, 1086, 2435
ApeKI	GCWGC	7 cut(s)	262, 286, 289, 565, 1031, 1172, 2239
ApoI	RAATTY	7 cut(s)	155, 195, 839, 1380, 1455, 2164, 2441
Asp700I	GAANNNNTTC	2 cut(s)	1012, 1326
AspLEI	GCGC	2 cut(s)	1426, 2504
AspS9I	GGNCC	1 cut(s)	2034
AsuHPI	GGTGA	4 cut(s)	653, 1063, 1694, 2391
AsuII	TTCGAA	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	2034
BalI	TGGCCA	3 cut(s)	81, 147, 936
BamHI	GGATCC	2 cut(s)	823, 2377
BanI	GGYRCC	1 cut(s)	2071
BanII	GRGCYC	3 cut(s)	61, 1598, 1624
Bbv12I	GWGCWC	2 cut(s)	61, 866
BbvCI	CCTCAGC	1 cut(s)	1764
BbvI	GCAGC	7 cut(s)	249, 276, 298, 577, 1043, 1184, 2226
BccI	CCATC	6 cut(s)	299, 677, 814, 926, 1957, 2350
BciT130I	CCWGG	4 cut(s)	92, 476, 960, 1784
BcoDI	GTCTC	4 cut(s)	517, 1406, 1898, 2415
BfaI	CTAG	4 cut(s)	752, 1094, 1151, 1661
BfmI	CTRYAG	3 cut(s)	290, 1238, 2119
BfuAI	ACCTGC	1 cut(s)	2410
BglI	GCCNNNNNGGC	1 cut(s)	87
BglII	AGATCT	3 cut(s)	1142, 1234, 1819
BisI	GCNGC	7 cut(s)	263, 287, 290, 566, 1032, 1173, 2240
BlsI	GCNGC	7 cut(s)	264, 288, 291, 567, 1033, 1174, 2241
Bme1390I	CCNGG	4 cut(s)	92, 476, 960, 1784
Bme18I	GGWCC	1 cut(s)	2034
BmgT120I	GGNCC	1 cut(s)	2034
BmiI	GGNNCC	6 cut(s)	825, 1597, 1781, 1810, 2073, 2379
BmrFI	CCNGG	4 cut(s)	92, 476, 960, 1784
BmsI	GCATC	4 cut(s)	517, 610, 1695, 1852
BoxI	GACNNNNGTC	1 cut(s)	333
BplI	GAGNNNNNCTC	2 cut(s)	1881, 1913
BpmI	CTGGAG	4 cut(s)	93, 499, 597, 2439
Bpu10I	CCTNAGC	1 cut(s)	1764
Bpu14I	TTCGAA	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	1024, 2450
BsaAI	YACGTR	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	2172
BsaI	GGTCTC	2 cut(s)	1406, 1898
BsaJI	CCNNGG	6 cut(s)	91, 331, 475, 958, 1074, 1125
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 500, 833, 2043
Bse118I	RCCGGY	3 cut(s)	493, 710, 1021
Bse1I	ACTGG	4 cut(s)	148, 324, 516, 614
Bse3DI	GCAATG	3 cut(s)	949, 1810, 1933
BseBI	CCWGG	4 cut(s)	92, 476, 960, 1784
BseDI	CCNNGG	6 cut(s)	91, 331, 475, 958, 1074, 1125
BseGI	GGATG	4 cut(s)	457, 1843, 1861, 1972
BseLI	CCNNNNNNNGG	4 cut(s)	129, 500, 833, 2043
BseMI	GCAATG	3 cut(s)	949, 1810, 1933
BseMII	CTCAG	4 cut(s)	1231, 1457, 1755, 2115
BseNI	ACTGG	4 cut(s)	148, 324, 516, 614
BseRI	GAGGAG	3 cut(s)	1199, 1886, 2204
BseXI	GCAGC	7 cut(s)	249, 276, 298, 577, 1043, 1184, 2226
BseYI	CCCAGC	3 cut(s)	122, 592, 1750
BsgI	GTGCAG	3 cut(s)	305, 1050, 2388
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	8 cut(s)	81, 90, 133, 147, 906, 936, 1088, 2437
BshNI	GGYRCC	1 cut(s)	2071
BsiHKAI	GWGCWC	2 cut(s)	61, 866
BsiSI	CCGG	4 cut(s)	494, 711, 1022, 2021
BslFI	GGGAC	2 cut(s)	1906, 2068
BslI	CCNNNNNNNGG	4 cut(s)	129, 500, 833, 2043
BsmAI	GTCTC	4 cut(s)	517, 1406, 1898, 2415
BsmFI	GGGAC	2 cut(s)	1906, 2068
BsmI	GAATGC	4 cut(s)	1139, 1919, 1984, 2455
BsnI	GGCC	8 cut(s)	81, 90, 133, 147, 906, 936, 1088, 2437
Bso31I	GGTCTC	2 cut(s)	1406, 1898
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	4 cut(s)	61, 866, 1598, 1624
Bsp19I	CCATGG	1 cut(s)	1125
BspACI	CCGC	4 cut(s)	188, 1038, 1341, 1700
BspANI	GGCC	8 cut(s)	81, 90, 133, 147, 906, 936, 1088, 2437
BspCNI	CTCAG	4 cut(s)	1230, 1458, 1756, 2114
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	6 cut(s)	825, 1597, 1781, 1810, 2073, 2379
BspMAI	CTGCAG	2 cut(s)	294, 1242
BspMI	ACCTGC	1 cut(s)	2410
BspQI	GCTCTTC	1 cut(s)	2273
BspT104I	TTCGAA	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	2071
BspTNI	GGTCTC	2 cut(s)	1406, 1898
BsrBI	CCGCTC	1 cut(s)	1700
BsrDI	GCAATG	3 cut(s)	949, 1810, 1933
BsrFI	RCCGGY	3 cut(s)	493, 710, 1021
BsrI	ACTGG	4 cut(s)	148, 324, 516, 614
BssAI	RCCGGY	3 cut(s)	493, 710, 1021
BssECI	CCNNGG	6 cut(s)	91, 331, 475, 958, 1074, 1125
BssNAI	GTATAC	1 cut(s)	2318
BssNI	GRCGYC	1 cut(s)	2172
BssT1I	CCWWGG	2 cut(s)	331, 1125
Bst1107I	GTATAC	1 cut(s)	2318
Bst2UI	CCWGG	4 cut(s)	92, 476, 960, 1784
Bst6I	CTCTTC	4 cut(s)	35, 1225, 1415, 2273
BstACI	GRCGYC	1 cut(s)	2172
BstBAI	YACGTR	1 cut(s)	85
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	6 cut(s)	311, 1036, 1090, 1428, 1509, 1710
BstDEI	CTNAG	5 cut(s)	1217, 1466, 1738, 1764, 2101
BstDSI	CCRYGG	2 cut(s)	1074, 1125
BstENI	CCTNNNNNAGG	1 cut(s)	831
BstF5I	GGATG	4 cut(s)	457, 1843, 1861, 1972
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	2 cut(s)	1426, 2504
BstMAI	GTCTC	4 cut(s)	517, 1406, 1898, 2415
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 629, 903, 912, 1031, 1988, 2245
BstNI	CCWGG	4 cut(s)	92, 476, 960, 1784
BstNSI	RCATGY	4 cut(s)	313, 565, 1029, 2455
BstPAI	GACNNNNGTC	1 cut(s)	333
BstSCI	CCNGG	4 cut(s)	90, 474, 958, 1782
BstSFI	CTRYAG	3 cut(s)	290, 1238, 2119
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	7 cut(s)	249, 276, 298, 577, 1043, 1184, 2226
BstX2I	RGATCY	7 cut(s)	95, 648, 823, 1142, 1234, 1819, 2377
BstYI	RGATCY	7 cut(s)	95, 648, 823, 1142, 1234, 1819, 2377
BstZ17I	GTATAC	1 cut(s)	2318
BsuRI	GGCC	8 cut(s)	81, 90, 133, 147, 906, 936, 1088, 2437
BtgI	CCRYGG	2 cut(s)	1074, 1125
BtgZI	GCGATG	3 cut(s)	337, 900, 1630
BtsCI	GGATG	4 cut(s)	457, 1843, 1861, 1972
BtsI	GCAGTG	2 cut(s)	257, 1656
BtsIMutI	CAGTG	9 cut(s)	257, 288, 331, 441, 762, 1656, 2109, 2182, 2225
BveI	ACCTGC	1 cut(s)	2410
Cac8I	GCNNGC	6 cut(s)	311, 1036, 1090, 1428, 1509, 1710
CaiI	CAGNNNCTG	1 cut(s)	490
CfoI	GCGC	2 cut(s)	1426, 2504
Cfr10I	RCCGGY	3 cut(s)	493, 710, 1021
Cfr13I	GGNCC	1 cut(s)	2034
CseI	GACGC	1 cut(s)	2327
Csp6I	GTAC	2 cut(s)	589, 1471
CviQI	GTAC	2 cut(s)	589, 1471
DdeI	CTNAG	5 cut(s)	1217, 1466, 1738, 1764, 2101
EaeI	YGGCCR	3 cut(s)	79, 145, 934
Eam1104I	CTCTTC	4 cut(s)	35, 1225, 1415, 2273
EarI	CTCTTC	4 cut(s)	35, 1225, 1415, 2273
Ecl136II	GAGCTC	1 cut(s)	59
Eco130I	CCWWGG	2 cut(s)	331, 1125
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	3 cut(s)	61, 1598, 1624
Eco31I	GGTCTC	2 cut(s)	1406, 1898
Eco32I	GATATC	2 cut(s)	1245, 2116
Eco47I	GGWCC	1 cut(s)	2034
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	618
EcoICRI	GAGCTC	1 cut(s)	59
EcoNI	CCTNNNNNAGG	1 cut(s)	831
EcoO109I	RGGNCCY	1 cut(s)	2034
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	4 cut(s)	90, 474, 958, 1782
EcoRV	GATATC	2 cut(s)	1245, 2116
EcoT14I	CCWWGG	2 cut(s)	331, 1125
EcoT22I	ATGCAT	1 cut(s)	2457
EcoT38I	GRGCYC	3 cut(s)	61, 1598, 1624
ErhI	CCWWGG	2 cut(s)	331, 1125
FalI	AAGNNNNNCTT	4 cut(s)	1583, 1615, 2267, 2299
FaqI	GGGAC	2 cut(s)	1906, 2068
FauI	CCCGC	2 cut(s)	1031, 1348
FblI	GTMKAC	2 cut(s)	213, 2317
Fnu4HI	GCNGC	7 cut(s)	263, 287, 290, 566, 1032, 1173, 2240
FokI	GGATG	4 cut(s)	444, 1830, 1868, 1979
FriOI	GRGCYC	3 cut(s)	61, 1598, 1624
Fsp4HI	GCNGC	7 cut(s)	263, 287, 290, 566, 1032, 1173, 2240
FspBI	CTAG	4 cut(s)	752, 1094, 1151, 1661
GlaI	GCGC	2 cut(s)	1425, 2503
GluI	GCNGC	7 cut(s)	263, 287, 290, 566, 1032, 1173, 2240
GsaI	CCCAGC	3 cut(s)	126, 596, 1754
GsuI	CTGGAG	4 cut(s)	93, 499, 597, 2439
HaeIII	GGCC	8 cut(s)	81, 90, 133, 147, 906, 936, 1088, 2437
HapII	CCGG	4 cut(s)	494, 711, 1022, 2021
HgaI	GACGC	1 cut(s)	2327
HhaI	GCGC	2 cut(s)	1426, 2504
Hin1I	GRCGYC	1 cut(s)	2172
Hin6I	GCGC	2 cut(s)	1424, 2502
HinP1I	GCGC	2 cut(s)	1424, 2502
HincII	GTYRAC	1 cut(s)	1278
HindII	GTYRAC	1 cut(s)	1278
HindIII	AAGCTT	1 cut(s)	2246
HinfI	GANTC	6 cut(s)	74, 398, 487, 1336, 1498, 1769
HpaI	GTTAAC	1 cut(s)	1278
HpaII	CCGG	4 cut(s)	494, 711, 1022, 2021
HphI	GGTGA	4 cut(s)	653, 1063, 1694, 2391
Hpy166II	GTNNAC	6 cut(s)	214, 790, 1278, 1612, 2272, 2318
Hpy188III	TCNNGA	9 cut(s)	110, 402, 652, 1103, 1151, 1289, 1437, 2141, 2460
Hpy8I	GTNNAC	6 cut(s)	214, 790, 1278, 1612, 2272, 2318
HpyAV	CCTTC	9 cut(s)	35, 47, 144, 668, 1585, 1609, 1673, 2047, 2101
HpyCH4IV	ACGT	3 cut(s)	84, 1394, 2172
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 629, 903, 912, 1031, 1988, 2245
HpyF3I	CTNAG	5 cut(s)	1217, 1466, 1738, 1764, 2101
HpySE526I	ACGT	3 cut(s)	84, 1394, 2172
Hsp92I	GRCGYC	1 cut(s)	2172
HspAI	GCGC	2 cut(s)	1424, 2502
KspAI	GTTAAC	1 cut(s)	1278
LguI	GCTCTTC	1 cut(s)	2273
LmnI	GCTCC	7 cut(s)	56, 869, 1169, 1601, 1604, 1785, 1814
Lsp1109I	GCAGC	7 cut(s)	249, 276, 298, 577, 1043, 1184, 2226
LweI	GCATC	4 cut(s)	517, 610, 1695, 1852
MaeI	CTAG	4 cut(s)	752, 1094, 1151, 1661
MaeII	ACGT	3 cut(s)	84, 1394, 2172
MaeIII	GTNAC	4 cut(s)	326, 1069, 1754, 2447
MbiI	CCGCTC	1 cut(s)	1700
MfeI	CAATTG	2 cut(s)	1162, 2371
MflI	RGATCY	7 cut(s)	95, 648, 823, 1142, 1234, 1819, 2377
MhlI	GDGCHC	4 cut(s)	61, 866, 1598, 1624
MlsI	TGGCCA	3 cut(s)	81, 147, 936
MluNI	TGGCCA	3 cut(s)	81, 147, 936
MlyI	GAGTC	2 cut(s)	481, 1763
MmeI	TCCRAC	2 cut(s)	172, 1272
Mox20I	TGGCCA	3 cut(s)	81, 147, 936
Mph1103I	ATGCAT	1 cut(s)	2457
MroXI	GAANNNNTTC	2 cut(s)	1012, 1326
MscI	TGGCCA	3 cut(s)	81, 147, 936
MseI	TTAA	9 cut(s)	672, 800, 891, 909, 1277, 1391, 1491, 1830, 2298
MslI	CAYNNNNRTG	4 cut(s)	992, 1649, 1961, 2077
Msp20I	TGGCCA	3 cut(s)	81, 147, 936
MspA1I	CMGCKG	2 cut(s)	289, 1034
MspI	CCGG	4 cut(s)	494, 711, 1022, 2021
MspR9I	CCNGG	4 cut(s)	92, 476, 960, 1784
MunI	CAATTG	2 cut(s)	1162, 2371
Mva1269I	GAATGC	4 cut(s)	1139, 1919, 1984, 2455
MvaI	CCWGG	4 cut(s)	92, 476, 960, 1784
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	7 cut(s)	87, 629, 903, 912, 1031, 1988, 2245
NcoI	CCATGG	1 cut(s)	1125
NlaIV	GGNNCC	6 cut(s)	825, 1597, 1781, 1810, 2073, 2379
NmuCI	GTSAC	3 cut(s)	326, 1069, 2447
NsiI	ATGCAT	1 cut(s)	2457
NspI	RCATGY	4 cut(s)	313, 565, 1029, 2455
NspV	TTCGAA	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	2410
PceI	AGGCCT	1 cut(s)	90
PciSI	GCTCTTC	1 cut(s)	2273
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	4 cut(s)	1139, 1919, 1984, 2455
PdmI	GAANNNNTTC	2 cut(s)	1012, 1326
PfeI	GAWTC	4 cut(s)	74, 398, 1336, 1498
PflFI	GACNNNGTC	1 cut(s)	1067
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	7 cut(s)	264, 288, 291, 567, 1033, 1174, 2241
PleI	GAGTC	2 cut(s)	481, 1763
PpsI	GAGTC	2 cut(s)	481, 1763
Ppu21I	YACGTR	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	2034
PshAI	GACNNNNGTC	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	61
Psp1406I	AACGTT	1 cut(s)	1394
Psp5II	RGGWCCY	1 cut(s)	2034
Psp6I	CCWGG	4 cut(s)	90, 474, 958, 1782
PspFI	CCCAGC	3 cut(s)	122, 592, 1750
PspGI	CCWGG	4 cut(s)	90, 474, 958, 1782
PspN4I	GGNNCC	6 cut(s)	825, 1597, 1781, 1810, 2073, 2379
PspPI	GGNCC	1 cut(s)	2034
PspPPI	RGGWCCY	1 cut(s)	2034
PstI	CTGCAG	2 cut(s)	294, 1242
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	7 cut(s)	95, 648, 823, 1142, 1234, 1819, 2377
PsyI	GACNNNGTC	1 cut(s)	1067
PvuII	CAGCTG	2 cut(s)	289, 1034
RsaI	GTAC	2 cut(s)	590, 1472
RsaNI	GTAC	2 cut(s)	589, 1471
RseI	CAYNNNNRTG	4 cut(s)	992, 1649, 1961, 2077
SacI	GAGCTC	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	2273
SaqAI	TTAA	9 cut(s)	672, 800, 891, 909, 1277, 1391, 1491, 1830, 2298
SatI	GCNGC	7 cut(s)	263, 287, 290, 566, 1032, 1173, 2240
Sau96I	GGNCC	1 cut(s)	2034
SchI	GAGTC	2 cut(s)	481, 1763
ScrFI	CCNGG	4 cut(s)	92, 476, 960, 1784
SduI	GDGCHC	4 cut(s)	61, 866, 1598, 1624
SfaNI	GCATC	4 cut(s)	517, 610, 1695, 1852
SfcI	CTRYAG	3 cut(s)	290, 1238, 2119
SfiI	GGCCNNNNNGGCC	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	153
SinI	GGWCC	1 cut(s)	2034
SmiMI	CAYNNNNRTG	4 cut(s)	992, 1649, 1961, 2077
SmlI	CTYRAG	2 cut(s)	1003, 2429
SmoI	CTYRAG	2 cut(s)	1003, 2429
SphI	GCATGC	1 cut(s)	313
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	4 cut(s)	188, 1038, 1341, 1700
SspMI	CTAG	4 cut(s)	752, 1094, 1151, 1661
SstI	GAGCTC	1 cut(s)	61
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	4 cut(s)	90, 474, 958, 1782
StyI	CCWWGG	2 cut(s)	331, 1125
TaiI	ACGT	3 cut(s)	87, 1397, 2175
TaqI	TCGA	8 cut(s)	153, 716, 1182, 1459, 1696, 1744, 1772, 2486
TfiI	GAWTC	4 cut(s)	74, 398, 1336, 1498
Tru1I	TTAA	9 cut(s)	672, 800, 891, 909, 1277, 1391, 1491, 1830, 2298
Tru9I	TTAA	9 cut(s)	672, 800, 891, 909, 1277, 1391, 1491, 1830, 2298
TscAI	CASTG	9 cut(s)	264, 288, 331, 441, 769, 1656, 2109, 2182, 2225
TseFI	GTSAC	3 cut(s)	326, 1069, 2447
TseI	GCWGC	7 cut(s)	262, 286, 289, 565, 1031, 1172, 2239
Tsp45I	GTSAC	3 cut(s)	326, 1069, 2447
TspGWI	ACGGA	3 cut(s)	588, 807, 2347
TspRI	CASTG	9 cut(s)	264, 288, 331, 441, 769, 1656, 2109, 2182, 2225
Tth111I	GACNNNGTC	1 cut(s)	1067
Van91I	CCANNNNNTGG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	2034
XagI	CCTNNNNNAGG	1 cut(s)	831
XapI	RAATTY	7 cut(s)	155, 195, 839, 1380, 1455, 2164, 2441
XbaI	TCTAGA	1 cut(s)	1150
XceI	RCATGY	4 cut(s)	313, 565, 1029, 2455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1123
XmiI	GTMKAC	2 cut(s)	213, 2317
XmnI	GAANNNNTTC	2 cut(s)	1012, 1326
XspI	CTAG	4 cut(s)	752, 1094, 1151, 1661
ZraI	GACGTC	1 cut(s)	2173
Zsp2I	ATGCAT	1 cut(s)	2457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.