Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004215

Physical Location & Seq

Genomic Coordinates Reverse (-)

59186828 .. 59188719

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCAGCTTGACGGAAACCTTGTTCTGTACCCAGCAAATTCTGAAAACTCTCCGGTAGATGCCTACTATGCTTCAGGTACTAATGGGATCTTGAACCTTCACCTCTATCTTAATAGTACAGATGGCCGTCTGGCTCTAATCAACACCACCAGCTCGAAAGTTTACAGAGTCATCAGTTGGGGTGGTGGTAATGATGTTCTAGCCAGTAATGATGATCTAGCCAATAACACCGTATATCGGGCAACTGTTGGCGTGAATGGAGTATTAAGGTTGTATGCTCATCAGATGGATCCTAAGAAGGGCAAACTCCAAGCACCTGTTTTTAAGTGGTACCAACCAACTGATCCTTGCGATGTTAAGGGCGTGTGTGGCCTTAACAGCTATTGCACACTCAATGATGGCCAACCAAACTGTCTTTGCCTTCCTGGATCAGATTACACTGACCTCAACAGCAGGAATATGGGTTGCTTGAGAAACTATTCAGAACCGGCGTGTGCAGCTGGCGGGAAAGAGAATACAACCTTTTATGACACAGTCACCATGGAAAATATGGCCTTGGCAGATACTCCTGACTTTGAAGCCACAATGACCAGAGAAGAATGCAATAGGTCTTGTCTAGAGGACTGCAATTGCGGAGCAGCTCTGTTCGAGCAGGCAAGTTGTATGAAACAGAAGCCACCCCTCAGATATGTGAGAAGAGATCTGAAGAAATCCAACATAGCTTTCTTCAAGGTAAGCAAGGTAACCACAAGTCCTGAAAGCAAGAATAATGGAACTGAAACTAAAGAACCAATTCCGAAGACTCCTCCCACTATTGTTGTTATCAGAAGCAAGAAAGTCATTGTGCAAATTCTTGTTTTAACCTTAGGTCTCATCCTCTTCTCATGTGTTGCGCTTGCAATATCTGGATTTTACATTTTCAAAATTCGAGTTCTGAGGAAGAACTTGGTTATCAGTGTTAGAGCAGAGGAGATGGTTCTTTCTACTTGGGTTTATAAGTGCTTTGTCAGTAGAGAGCTGCATAAGCTTATTGTGGGTGGCGAAGAAGTGAACAAGAAGAGCTTGGAGAATATGGTTAAGGTGGGATTATGGTGTATACAAGATGAACCAGCTCTGCGTCCATCAATGAAGTCTGTAGTATTGATGTTACAAGGCATTACTGATATATCTATCCCTCCATGTCCAACCACTGCTTCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

400

Amino Acids

44.11

Weight (kDa)

8.38

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004215)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23400
prunus_persica	Prupe.6G165300_v2.0.a1 Prupe.6G165500_v2.0.a1 Prupe.6G165500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118691 RchiOBHm_Chr2g0118751 RchiOBHm_Chr2g0118771
rosa_laevigata	RLG00000018420
rosa_multiflora	Rmu_co8322425.1_g000001 Rmu_sc0001814.1_g000023 Rmu_sc0001814.1_g000024 Rmu_sc0001814.1_g000031 Rmu_sc0002831.1_g000032 Rmu_sc0003564.1_g000001 Rmu_sc0004345.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124740 Rroxscaffold_2G00124750 Rroxscaffold_2G00124840 Rroxscaffold_2G00124870 Rroxscaffold_2G00124880 Rroxscaffold_2G00125530
rosa_rugosa	Rorug02G0218500
rosa_samantha	Rh2AG274800 Rh2AG275100 Rh2AG275400 Rh2BG286900 Rh2BG287300 Rh2DG282600 Rh2DG301600 Rh2DG301800
rosa_wichuraiana	Rw2G021860 Rw2G021880 Rw2G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	996
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	1096
AciI	CCGC	2 cut(s)	504, 633
AclWI	GGATC	5 cut(s)	95, 284, 297, 338, 436
AcoI	YGGCCR	2 cut(s)	124, 400
AcsI	RAATTY	3 cut(s)	37, 849, 924
AcuI	CTGAAG	2 cut(s)	57, 725
AfaI	GTAC	4 cut(s)	29, 79, 118, 332
AfiI	CCNNNNNNNGG	2 cut(s)	237, 299
AgsI	TTSAA	4 cut(s)	94, 578, 730, 922
AjnI	CCWGG	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	3 cut(s)	707, 739, 1177
AloI	GAACNNNNNNTCC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	875
AlwI	GGATC	5 cut(s)	95, 284, 297, 338, 436
AoxI	GGCC	4 cut(s)	124, 370, 400, 552
ApeKI	GCWGC	4 cut(s)	4, 497, 638, 1018
ApoI	RAATTY	3 cut(s)	37, 849, 924
Asp700I	GAANNNNTTC	2 cut(s)	478, 792
Asp718I	GGTACC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	895
AsuHPI	GGTGA	2 cut(s)	92, 529
AxyI	CCTNAGG	1 cut(s)	865
BalI	TGGCCA	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	806
BbvI	GCAGC	4 cut(s)	16, 509, 650, 1005
BccI	CCATC	5 cut(s)	116, 280, 392, 967, 1129
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	875
BfaI	CTAG	3 cut(s)	200, 218, 617
BfmI	CTRYAG	1 cut(s)	1134
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	4 cut(s)	5, 498, 639, 1019
BlsI	GCNGC	4 cut(s)	6, 499, 640, 1020
Bme1390I	CCNGG	1 cut(s)	426
BmiI	GGNNCC	2 cut(s)	291, 332
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	806
BpuEI	CTTGAG	1 cut(s)	490
BsaI	GGTCTC	1 cut(s)	875
BsaJI	CCNNGG	2 cut(s)	540, 555
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 299
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	204
Bse21I	CCTNAGG	1 cut(s)	865
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	540, 555
BseGI	GGATG	1 cut(s)	873
BseLI	CCNNNNNNNGG	2 cut(s)	237, 299
BseMII	CTCAG	2 cut(s)	697, 926
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	795, 983
BseXI	GCAGC	4 cut(s)	16, 509, 650, 1005
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	516
BshFI	GGCC	4 cut(s)	126, 372, 402, 554
BshNI	GGYRCC	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	53, 488
BslI	CCNNNNNNNGG	2 cut(s)	237, 299
BsmAI	GTCTC	1 cut(s)	875
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	4 cut(s)	126, 372, 402, 554
Bso31I	GGTCTC	1 cut(s)	875
Bsp143I	GATC	6 cut(s)	87, 214, 289, 343, 428, 700
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	2 cut(s)	504, 633
BspANI	GGCC	4 cut(s)	126, 372, 402, 554
BspCNI	CTCAG	2 cut(s)	696, 927
BspLI	GGNNCC	2 cut(s)	291, 332
BspPI	GGATC	5 cut(s)	95, 284, 297, 338, 436
BspQI	GCTCTTC	1 cut(s)	1052
BspT107I	GGYRCC	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	875
BsrFI	RCCGGY	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	540, 555
BssMI	GATC	6 cut(s)	87, 214, 289, 343, 428, 700
BssNAI	GTATAC	1 cut(s)	1097
BssT1I	CCWWGG	2 cut(s)	540, 555
Bst1107I	GTATAC	1 cut(s)	1097
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	4 cut(s)	232, 247, 413, 535
Bst6I	CTCTTC	3 cut(s)	691, 884, 1052
BstC8I	GCNNGC	3 cut(s)	502, 654, 897
BstDEI	CTNAG	4 cut(s)	294, 683, 865, 935
BstDSI	CCRYGG	1 cut(s)	540
BstEII	GGTNACC	1 cut(s)	742
BstF5I	GGATG	1 cut(s)	873
BstHHI	GCGC	1 cut(s)	895
BstKTI	GATC	6 cut(s)	90, 217, 292, 346, 431, 703
BstMAI	GTCTC	1 cut(s)	875
BstMBI	GATC	6 cut(s)	87, 214, 289, 343, 428, 700
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 369, 378, 497, 1024
BstNI	CCWGG	1 cut(s)	426
BstPI	GGTNACC	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	1134
BstV1I	GCAGC	4 cut(s)	16, 509, 650, 1005
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	3 cut(s)	87, 289, 700
BstYI	RGATCY	3 cut(s)	87, 289, 700
BstZ17I	GTATAC	1 cut(s)	1097
Bsu36I	CCTNAGG	1 cut(s)	865
BsuRI	GGCC	4 cut(s)	126, 372, 402, 554
BtgI	CCRYGG	1 cut(s)	540
BtgZI	GCGATG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	873
BtsI	GCAGTG	1 cut(s)	1188
BtsIMutI	CAGTG	3 cut(s)	438, 961, 1188
Cac8I	GCNNGC	3 cut(s)	502, 654, 897
CfoI	GCGC	1 cut(s)	895
Cfr10I	RCCGGY	1 cut(s)	487
CseI	GACGC	1 cut(s)	1106
Csp6I	GTAC	4 cut(s)	28, 78, 117, 331
CspCI	CAANNNNNGTGG	2 cut(s)	799, 834
CviAII	CATG	3 cut(s)	541, 885, 1179
CviQI	GTAC	4 cut(s)	28, 78, 117, 331
DdeI	CTNAG	4 cut(s)	294, 683, 865, 935
DpnI	GATC	6 cut(s)	89, 216, 291, 345, 430, 702
DpnII	GATC	6 cut(s)	87, 214, 289, 343, 428, 700
EaeI	YGGCCR	2 cut(s)	124, 400
Eam1104I	CTCTTC	3 cut(s)	691, 884, 1052
EarI	CTCTTC	3 cut(s)	691, 884, 1052
Eco130I	CCWWGG	2 cut(s)	540, 555
Eco31I	GGTCTC	1 cut(s)	875
Eco57I	CTGAAG	2 cut(s)	57, 725
Eco81I	CCTNAGG	1 cut(s)	865
Eco91I	GGTNACC	1 cut(s)	742
EcoO65I	GGTNACC	1 cut(s)	742
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	540, 555
ErhI	CCWWGG	2 cut(s)	540, 555
FaeI	CATG	3 cut(s)	544, 888, 1182
FalI	AAGNNNNNCTT	2 cut(s)	1046, 1078
FatI	CATG	3 cut(s)	540, 884, 1178
FauI	CCCGC	1 cut(s)	497
FblI	GTMKAC	1 cut(s)	1096
Fnu4HI	GCNGC	4 cut(s)	5, 498, 639, 1019
FokI	GGATG	1 cut(s)	860
Fsp4HI	GCNGC	4 cut(s)	5, 498, 639, 1019
FspBI	CTAG	3 cut(s)	200, 218, 617
GlaI	GCGC	1 cut(s)	894
GluI	GCNGC	4 cut(s)	5, 498, 639, 1019
GsaI	CCCAGC	1 cut(s)	35
HaeIII	GGCC	4 cut(s)	126, 372, 402, 554
HapII	CCGG	2 cut(s)	53, 488
HgaI	GACGC	1 cut(s)	1106
HhaI	GCGC	1 cut(s)	895
Hin1II	CATG	3 cut(s)	544, 888, 1182
Hin6I	GCGC	1 cut(s)	893
HinP1I	GCGC	1 cut(s)	893
HindIII	AAGCTT	1 cut(s)	1025
HinfI	GANTC	2 cut(s)	168, 802
HpaII	CCGG	2 cut(s)	53, 488
HphI	GGTGA	2 cut(s)	92, 529
Hpy166II	GTNNAC	3 cut(s)	163, 1051, 1097
Hpy188I	TCNGA	9 cut(s)	43, 285, 433, 484, 686, 705, 798, 827, 936
Hpy188III	TCNNGA	5 cut(s)	91, 569, 617, 755, 906
Hpy8I	GTNNAC	3 cut(s)	163, 1051, 1097
HpyAV	CCTTC	3 cut(s)	107, 292, 431
HpyCH4III	ACNGT	4 cut(s)	232, 247, 413, 535
HpyCH4V	TGCA	8 cut(s)	4, 387, 497, 603, 627, 847, 899, 1021
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 369, 378, 497, 1024
HpyF3I	CTNAG	4 cut(s)	294, 683, 865, 935
Hsp92II	CATG	3 cut(s)	544, 888, 1182
HspAI	GCGC	1 cut(s)	893
KpnI	GGTACC	1 cut(s)	334
Kzo9I	GATC	6 cut(s)	87, 214, 289, 343, 428, 700
LguI	GCTCTTC	1 cut(s)	1052
LmnI	GCTCC	1 cut(s)	635
Lsp1109I	GCAGC	4 cut(s)	16, 509, 650, 1005
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	3 cut(s)	200, 218, 617
MaeIII	GTNAC	3 cut(s)	535, 742, 1146
MalI	GATC	6 cut(s)	89, 216, 291, 345, 430, 702
MboI	GATC	6 cut(s)	87, 214, 289, 343, 428, 700
MboII	GAAGA	9 cut(s)	608, 708, 718, 718, 811, 871, 952, 1055, 1069
MfeI	CAATTG	1 cut(s)	628
MflI	RGATCY	3 cut(s)	87, 289, 700
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	5 cut(s)	37, 628, 792, 849, 924
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	2 cut(s)	177, 796
MmeI	TCCRAC	1 cut(s)	738
MnlI	CCTC	9 cut(s)	113, 455, 613, 692, 816, 887, 930, 961, 1185
Mox20I	TGGCCA	1 cut(s)	402
MroXI	GAANNNNTTC	2 cut(s)	478, 792
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	7 cut(s)	111, 266, 324, 357, 375, 860, 1077
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	2 cut(s)	53, 488
MspR9I	CCNGG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	628
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	5 cut(s)	68, 369, 378, 497, 1024
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	6 cut(s)	87, 214, 289, 343, 428, 700
NlaIII	CATG	3 cut(s)	544, 888, 1182
NlaIV	GGNNCC	2 cut(s)	291, 332
NmuCI	GTSAC	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	1052
PctI	GAATGC	1 cut(s)	605
PdmI	GAANNNNTTC	2 cut(s)	478, 792
PflFI	GACNNNGTC	1 cut(s)	533
PfoI	TCCNGGA	1 cut(s)	424
PkrI	GCNGC	4 cut(s)	6, 499, 640, 1020
PleI	GAGTC	2 cut(s)	176, 796
PpsI	GAGTC	2 cut(s)	176, 796
PsiI	TTATAA	1 cut(s)	996
Psp6I	CCWGG	1 cut(s)	424
PspEI	GGTNACC	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	291, 332
PsuI	RGATCY	3 cut(s)	87, 289, 700
PsyI	GACNNNGTC	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	4 cut(s)	29, 79, 118, 332
RsaNI	GTAC	4 cut(s)	28, 78, 117, 331
SapI	GCTCTTC	1 cut(s)	1052
SaqAI	TTAA	7 cut(s)	111, 266, 324, 357, 375, 860, 1077
SatI	GCNGC	4 cut(s)	5, 498, 639, 1019
Sau3AI	GATC	6 cut(s)	87, 214, 289, 343, 428, 700
SchI	GAGTC	2 cut(s)	177, 796
ScrFI	CCNGG	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	1134
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	5 cut(s)	37, 628, 792, 849, 924
SsiI	CCGC	2 cut(s)	504, 633
SspMI	CTAG	3 cut(s)	200, 218, 617
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	2 cut(s)	540, 555
TaaI	ACNGT	4 cut(s)	232, 247, 413, 535
TaqI	TCGA	3 cut(s)	155, 648, 928
TasI	AATT	5 cut(s)	37, 628, 792, 849, 924
TatI	WGTACW	1 cut(s)	116
Tru1I	TTAA	7 cut(s)	111, 266, 324, 357, 375, 860, 1077
Tru9I	TTAA	7 cut(s)	111, 266, 324, 357, 375, 860, 1077
TscAI	CASTG	3 cut(s)	445, 961, 1195
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	4 cut(s)	4, 497, 638, 1018
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	3 cut(s)	680, 1119, 1142
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	3 cut(s)	445, 961, 1195
Tth111I	GACNNNGTC	1 cut(s)	533
XapI	RAATTY	3 cut(s)	37, 849, 924
XbaI	TCTAGA	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	1096
XmnI	GAANNNNTTC	2 cut(s)	478, 792
XspI	CTAG	3 cut(s)	200, 218, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.