Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004215

Physical Location & Seq

Genomic Coordinates Reverse (-)

59444505 .. 59446371

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGAAAGTGGGGTTGTGGTGCGTTCAAGATGATCCAGCTTTGCGTCCTTTCATGAAGAATGTAATCTTGATGTTGGAAGGGACAACGGACATACCAGTTCCACCATGTCCAGAGCTTCCTCTCTTAGAGAGTTCTGAAAATAATCCAAGCATGCATAGGATTATGGCTTCCATTGGCATTGCTATCCTTCTCTTCTCACTACATTCTCTCTGTGAAGGAGCTCAACAAAACAACGATTCTAGGCACATACGCCTGGGATCTTCAGTCTTTCCAGAAACTCACCCCAGCTCATGGCCTTCTGCCTCTGGCCTGTTTGAATTCGGCTTTTATCAGCAAGGAAATGTGACGCAGACGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

120

Amino Acids

13.24

Weight (kDa)

4.98

Isoelectric Point (pI)

60.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004215)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23400
prunus_persica	Prupe.6G165300_v2.0.a1 Prupe.6G165500_v2.0.a1 Prupe.6G165500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118691 RchiOBHm_Chr2g0118751 RchiOBHm_Chr2g0118771
rosa_laevigata	RLG00000018420
rosa_multiflora	Rmu_co8322425.1_g000001 Rmu_sc0001814.1_g000023 Rmu_sc0001814.1_g000024 Rmu_sc0001814.1_g000031 Rmu_sc0002831.1_g000032 Rmu_sc0003564.1_g000001 Rmu_sc0004345.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124740 Rroxscaffold_2G00124750 Rroxscaffold_2G00124840 Rroxscaffold_2G00124870 Rroxscaffold_2G00124880 Rroxscaffold_2G00125530
rosa_rugosa	Rorug02G0218500
rosa_samantha	Rh2AG274800 Rh2AG275100 Rh2AG275400 Rh2BG286900 Rh2BG287300 Rh2DG282600 Rh2DG301600 Rh2DG301800
rosa_wichuraiana	Rw2G021860 Rw2G021880 Rw2G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	294
AclWI	GGATC	2 cut(s)	29, 268
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	29, 320
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	4 cut(s)	41, 118, 224, 291
AluI	AGCT	4 cut(s)	41, 118, 224, 291
Alw21I	GWGCWC	1 cut(s)	226
AlwI	GGATC	2 cut(s)	29, 268
AoxI	GGCC	2 cut(s)	296, 310
ApoI	RAATTY	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	16, 275
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	257
BfaI	CTAG	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	287
BshFI	GGCC	2 cut(s)	298, 312
BsiHKAI	GWGCWC	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	298, 312
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	34, 260
BspANI	GGCC	2 cut(s)	298, 312
BspHI	TCATGA	1 cut(s)	54
BspPI	GGATC	2 cut(s)	29, 268
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	2 cut(s)	34, 260
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	127
BstKTI	GATC	2 cut(s)	37, 263
BstMBI	GATC	2 cut(s)	34, 260
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	298, 312
Cac8I	GCNNGC	1 cut(s)	155
CciI	TCATGA	1 cut(s)	54
CseI	GACGC	2 cut(s)	35, 358
CviAII	CATG	4 cut(s)	55, 108, 154, 294
CviJI	RGCY	8 cut(s)	41, 118, 170, 224, 291, 298, 312, 327
CviKI_1	RGCY	8 cut(s)	41, 118, 170, 224, 291, 298, 312, 327
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	2 cut(s)	36, 262
DpnII	GATC	2 cut(s)	34, 260
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	4 cut(s)	58, 111, 157, 297
FaiI	YATR	8 cut(s)	56, 95, 109, 155, 159, 167, 251, 295
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	4 cut(s)	54, 107, 153, 293
FriOI	GRGCYC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	298, 312
HgaI	GACGC	2 cut(s)	35, 358
Hin1II	CATG	4 cut(s)	58, 111, 157, 297
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	2 cut(s)	16, 275
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	5 cut(s)	29, 55, 70, 113, 275
HpyAV	CCTTC	4 cut(s)	74, 200, 212, 309
HpyCH4V	TGCA	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	127
Hsp92II	CATG	4 cut(s)	58, 111, 157, 297
Kzo9I	GATC	2 cut(s)	34, 260
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	9 cut(s)	51, 111, 126, 242, 269, 288, 294, 301, 326
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	2 cut(s)	36, 262
MboI	GATC	2 cut(s)	34, 260
MboII	GAAGA	3 cut(s)	70, 187, 255
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	2 cut(s)	132, 316
Mph1103I	ATGCAT	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
NdeII	GATC	2 cut(s)	34, 260
NlaIII	CATG	4 cut(s)	58, 111, 157, 297
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	1 cut(s)	157
PaeI	GCATGC	1 cut(s)	157
PagI	TCATGA	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	239
PflMI	CCANNNNNTGG	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	34, 260
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	4 cut(s)	43, 120, 226, 293
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	1 cut(s)	320
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	255
TasI	AATT	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	43, 71
TspGWI	ACGGA	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	294
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.