Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004215

Physical Location & Seq

Genomic Coordinates Reverse (-)

59441813 .. 59443899

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGAGTGACCAAGGTCATAAAAAAGTAGTCATCGCAAGTGCAACAAACGGTTCTGTTTCCTCTGCCTCCATGCTTGATTCTGGAAACTTCGTTCTTTACGACGAAAACTATAAAGTGATCTGGGAGAGTTTCAATCATCCTACTGATACTATCCTGGGTGGTCAGACTCTGCCGGCTGGGGGTCAATTAGTCTCCAGTTTGTCCGATGCTGACCACTCAACAGGACATTTTCATCTCAACATGCAGACTGACGGAAACCTTGTTCTGTACCCAGCAAACTCTGAAAACTCTCCGATAGATGCCTACTATGCTACAGATACTAATGGGATCTTGAACCTTCACCTCTATCTTAACAGTACAGATGGCAGTCTGGCTCTAATCAACACCACCAGCTCGGAAGTTTACCAAGTCATCAGTGACGGTAATGATGATCTAAACAGTACAACTGTATATCGGGCAACTGTTAGCATGAACGGAGTTCTACGGGTGTATTCTCATCAGATGGATCCTGACAAAGGCAAACTCCAAGCACCTGTTATTATGTGGTACAAACCAGATGATCCTTGCGATGTTAATGGCGTGTGTGGCCTTAACAGCTATTGCACACTCAATGATGGCCAACCAGACTGTCTTTGCCTTCCTCGATCAGATTACGCTGACCTCAACAGCAGGACTATGGGTTGCTTGAGAAACTATTCAGAACCGGCGTGTGCAGCTGGCGGGAAAGAGAATACAACCTTTTATGACATAGTCACCATGGAAAATATGGCCTGGGTAGATACTCCTGACTTTGAAGCCACAATGACCATAGAAGAATGCAAGAGGTCTTGTCTAGAGGACTGCAATTGTGGAGCAGCTCTGTTCGAGCAGACAAAGTGTATGAAACAAAAGCCACCACTCAGATATTGGAGAAGAGATCTGCAGAAATCCAACACAGCTTTCTTCAAGGTAAGCAACTTAACAAGTCCTGAAAGCAAGAATAATGGAACTGAAACTAAAGAACCCACTACGGTTGTTATCCGAAGCAAGAAAGTCATTGTGCAAATTCTTGTTTTAACCTTGGGTCTCATCCTCTTCTCATGTGTTGCGCTTGCAATATCTGGATTTTACATTTTCAAAATTCGAGTTCTGAGGTACAAAAGGCTGACAGAGGTTAATGGGAATCTGGGGCTGGCTGATGAGGAACTCACTATGAGAGTTTTTTCGAGGAACTTGGACGTCAGTGTTAGAGCAGAGGAGATAGTTCTTTCTACTTGGGTTTATAAGTGCTTTGTCAGTAGAGAGCTGCACAAGTTTATTGTGGGTGGCGAAGAAGTGAACAAGAAGAGCTTGGAGAATATGGTTAAGGTGGGATTATGGTGTATACAAGATGAACCAGCTCTGCGTCCATCAATGAAGTCTATAGTATTGATGTTACAAGGCATTACTGATATATCTATCCCTCCCTGTCCAACCACTACTTCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

489

Amino Acids

54.16

Weight (kDa)

5.18

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	13 - 57	1.2e-08	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004215)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23400
prunus_persica	Prupe.6G165300_v2.0.a1 Prupe.6G165500_v2.0.a1 Prupe.6G165500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118691 RchiOBHm_Chr2g0118751 RchiOBHm_Chr2g0118771
rosa_laevigata	RLG00000018420
rosa_multiflora	Rmu_co8322425.1_g000001 Rmu_sc0001814.1_g000023 Rmu_sc0001814.1_g000024 Rmu_sc0001814.1_g000031 Rmu_sc0002831.1_g000032 Rmu_sc0003564.1_g000001 Rmu_sc0004345.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124740 Rroxscaffold_2G00124750 Rroxscaffold_2G00124840 Rroxscaffold_2G00124870 Rroxscaffold_2G00124880 Rroxscaffold_2G00125530
rosa_rugosa	Rorug02G0218500
rosa_samantha	Rh2AG274800 Rh2AG275100 Rh2AG275400 Rh2BG286900 Rh2BG287300 Rh2DG282600 Rh2DG301600 Rh2DG301800
rosa_wichuraiana	Rw2G021860 Rw2G021880 Rw2G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1263
AatII	GACGTC	1 cut(s)	1221
AccI	GTMKAC	1 cut(s)	1363
AciI	CCGC	1 cut(s)	720
AclWI	GGATC	4 cut(s)	335, 500, 513, 554
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	2 cut(s)	1044, 1119
AcyI	GRCGYC	1 cut(s)	1218
AfaI	GTAC	5 cut(s)	269, 358, 442, 548, 1136
AfiI	CCNNNNNNNGG	2 cut(s)	179, 515
AgsI	TTSAA	5 cut(s)	133, 334, 794, 946, 1117
AjnI	CCWGG	2 cut(s)	153, 770
AjuI	GAANNNNNNNTTGG	3 cut(s)	923, 955, 1444
AloI	GAACNNNNNNTCC	4 cut(s)	75, 107, 246, 278
AluBI	AGCT	8 cut(s)	393, 597, 716, 857, 938, 1285, 1329, 1379
AluI	AGCT	8 cut(s)	393, 597, 716, 857, 938, 1285, 1329, 1379
Alw26I	GTCTC	2 cut(s)	196, 1070
AlwI	GGATC	4 cut(s)	335, 500, 513, 554
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	3 cut(s)	586, 616, 768
ApeKI	GCWGC	3 cut(s)	713, 854, 1285
ApoI	RAATTY	2 cut(s)	1044, 1119
Asp700I	GAANNNNTTC	1 cut(s)	694
AspLEI	GCGC	1 cut(s)	1090
AsuHPI	GGTGA	2 cut(s)	332, 745
BalI	TGGCCA	1 cut(s)	618
BamHI	GGATCC	1 cut(s)	505
BbvI	GCAGC	3 cut(s)	725, 866, 1272
BccI	CCATC	4 cut(s)	356, 496, 608, 1396
BciT130I	CCWGG	2 cut(s)	155, 772
BcoDI	GTCTC	2 cut(s)	196, 1070
BfaI	CTAG	1 cut(s)	833
BfmI	CTRYAG	3 cut(s)	312, 920, 1401
BglII	AGATCT	1 cut(s)	916
BisI	GCNGC	3 cut(s)	714, 855, 1286
BlsI	GCNGC	3 cut(s)	715, 856, 1287
Bme1390I	CCNGG	2 cut(s)	155, 772
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	2 cut(s)	155, 772
BmsI	GCATC	2 cut(s)	196, 289
BoxI	GACNNNNGTC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	706
BsaHI	GRCGYC	1 cut(s)	1218
BsaI	GGTCTC	1 cut(s)	1070
BsaJI	CCNNGG	5 cut(s)	10, 154, 756, 771, 1059
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 515
Bse118I	RCCGGY	2 cut(s)	172, 703
Bse1I	ACTGG	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	155, 772
BseDI	CCNNGG	5 cut(s)	10, 154, 756, 771, 1059
BseGI	GGATG	2 cut(s)	136, 1068
BseLI	CCNNNNNNNGG	2 cut(s)	179, 515
BseMII	CTCAG	2 cut(s)	913, 1121
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	1250
BseXI	GCAGC	3 cut(s)	725, 866, 1272
BseYI	CCCAGC	2 cut(s)	176, 271
BsgI	GTGCAG	2 cut(s)	732, 1271
BshFI	GGCC	3 cut(s)	588, 618, 770
BsiSI	CCGG	2 cut(s)	173, 704
BslI	CCNNNNNNNGG	2 cut(s)	179, 515
BsmAI	GTCTC	2 cut(s)	196, 1070
BsmI	GAATGC	1 cut(s)	821
BsnI	GGCC	3 cut(s)	588, 618, 770
Bso31I	GGTCTC	1 cut(s)	1070
Bsp143I	GATC	7 cut(s)	117, 327, 430, 505, 559, 644, 916
Bsp19I	CCATGG	1 cut(s)	756
BspACI	CCGC	1 cut(s)	720
BspANI	GGCC	3 cut(s)	588, 618, 770
BspCNI	CTCAG	2 cut(s)	912, 1122
BspLI	GGNNCC	1 cut(s)	507
BspMAI	CTGCAG	1 cut(s)	924
BspPI	GGATC	4 cut(s)	335, 500, 513, 554
BspQI	GCTCTTC	1 cut(s)	1319
BspTNI	GGTCTC	1 cut(s)	1070
BsrFI	RCCGGY	2 cut(s)	172, 703
BsrI	ACTGG	1 cut(s)	195
BssAI	RCCGGY	2 cut(s)	172, 703
BssECI	CCNNGG	5 cut(s)	10, 154, 756, 771, 1059
BssMI	GATC	7 cut(s)	117, 327, 430, 505, 559, 644, 916
BssNAI	GTATAC	1 cut(s)	1364
BssNI	GRCGYC	1 cut(s)	1218
BssT1I	CCWWGG	3 cut(s)	10, 756, 1059
Bst1107I	GTATAC	1 cut(s)	1364
Bst2UI	CCWGG	2 cut(s)	155, 772
Bst4CI	ACNGT	8 cut(s)	50, 356, 422, 440, 448, 463, 629, 1012
Bst6I	CTCTTC	3 cut(s)	907, 1079, 1319
BstACI	GRCGYC	1 cut(s)	1218
BstC8I	GCNNGC	4 cut(s)	174, 718, 1092, 1173
BstDEI	CTNAG	2 cut(s)	899, 1130
BstDSI	CCRYGG	1 cut(s)	756
BstENI	CCTNNNNNAGG	1 cut(s)	513
BstF5I	GGATG	2 cut(s)	136, 1068
BstHHI	GCGC	1 cut(s)	1090
BstKTI	GATC	7 cut(s)	120, 330, 433, 508, 562, 647, 919
BstMAI	GTCTC	2 cut(s)	196, 1070
BstMBI	GATC	7 cut(s)	117, 327, 430, 505, 559, 644, 916
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 585, 594, 713
BstNI	CCWGG	2 cut(s)	155, 772
BstNSI	RCATGY	1 cut(s)	244
BstPAI	GACNNNNGTC	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	153, 770
BstSFI	CTRYAG	3 cut(s)	312, 920, 1401
BstV1I	GCAGC	3 cut(s)	725, 866, 1272
BstX2I	RGATCY	3 cut(s)	327, 505, 916
BstYI	RGATCY	3 cut(s)	327, 505, 916
BstZ17I	GTATAC	1 cut(s)	1364
BsuRI	GGCC	3 cut(s)	588, 618, 770
BtgI	CCRYGG	1 cut(s)	756
BtgZI	GCGATG	2 cut(s)	16, 582
BtsCI	GGATG	2 cut(s)	136, 1068
BtsIMutI	CAGTG	2 cut(s)	421, 1228
Cac8I	GCNNGC	4 cut(s)	174, 718, 1092, 1173
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	1090
Cfr10I	RCCGGY	2 cut(s)	172, 703
CseI	GACGC	1 cut(s)	1373
Csp6I	GTAC	5 cut(s)	268, 357, 441, 547, 1135
CspCI	CAANNNNNGTGG	2 cut(s)	994, 1029
CviAII	CATG	5 cut(s)	70, 241, 469, 757, 1080
CviQI	GTAC	5 cut(s)	268, 357, 441, 547, 1135
DdeI	CTNAG	2 cut(s)	899, 1130
DpnI	GATC	7 cut(s)	119, 329, 432, 507, 561, 646, 918
DpnII	GATC	7 cut(s)	117, 327, 430, 505, 559, 644, 916
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	3 cut(s)	907, 1079, 1319
EarI	CTCTTC	3 cut(s)	907, 1079, 1319
Eco130I	CCWWGG	3 cut(s)	10, 756, 1059
Eco31I	GGTCTC	1 cut(s)	1070
EcoNI	CCTNNNNNAGG	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	153, 770
EcoT14I	CCWWGG	3 cut(s)	10, 756, 1059
ErhI	CCWWGG	3 cut(s)	10, 756, 1059
FaeI	CATG	5 cut(s)	73, 244, 472, 760, 1083
FalI	AAGNNNNNCTT	2 cut(s)	1313, 1345
FatI	CATG	5 cut(s)	69, 240, 468, 756, 1079
FauI	CCCGC	1 cut(s)	713
FblI	GTMKAC	1 cut(s)	1363
Fnu4HI	GCNGC	3 cut(s)	714, 855, 1286
FokI	GGATG	2 cut(s)	123, 1055
Fsp4HI	GCNGC	3 cut(s)	714, 855, 1286
FspBI	CTAG	1 cut(s)	833
GlaI	GCGC	1 cut(s)	1089
GluI	GCNGC	3 cut(s)	714, 855, 1286
GsaI	CCCAGC	2 cut(s)	180, 275
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	588, 618, 770
HapII	CCGG	2 cut(s)	173, 704
HgaI	GACGC	1 cut(s)	1373
HhaI	GCGC	1 cut(s)	1090
Hin1I	GRCGYC	1 cut(s)	1218
Hin1II	CATG	5 cut(s)	73, 244, 472, 760, 1083
Hin6I	GCGC	1 cut(s)	1088
HinP1I	GCGC	1 cut(s)	1088
HinfI	GANTC	3 cut(s)	77, 166, 1162
HpaII	CCGG	2 cut(s)	173, 704
HphI	GGTGA	2 cut(s)	332, 745
Hpy166II	GTNNAC	3 cut(s)	403, 1318, 1364
Hpy188III	TCNNGA	7 cut(s)	81, 331, 509, 785, 833, 968, 1101
Hpy8I	GTNNAC	3 cut(s)	403, 1318, 1364
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	347, 647
HpyCH4III	ACNGT	8 cut(s)	50, 356, 422, 440, 448, 463, 629, 1012
HpyCH4IV	ACGT	1 cut(s)	1218
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 585, 594, 713
HpyF3I	CTNAG	2 cut(s)	899, 1130
HpySE526I	ACGT	1 cut(s)	1218
Hsp92I	GRCGYC	1 cut(s)	1218
Hsp92II	CATG	5 cut(s)	73, 244, 472, 760, 1083
HspAI	GCGC	1 cut(s)	1088
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Kzo9I	GATC	7 cut(s)	117, 327, 430, 505, 559, 644, 916
LguI	GCTCTTC	1 cut(s)	1319
LmnI	GCTCC	1 cut(s)	851
Lsp1109I	GCAGC	3 cut(s)	725, 866, 1272
LweI	GCATC	2 cut(s)	196, 289
MaeI	CTAG	1 cut(s)	833
MaeII	ACGT	1 cut(s)	1218
MaeIII	GTNAC	4 cut(s)	5, 416, 751, 1413
MalI	GATC	7 cut(s)	119, 329, 432, 507, 561, 646, 918
MboI	GATC	7 cut(s)	117, 327, 430, 505, 559, 644, 916
MboII	GAAGA	6 cut(s)	824, 924, 934, 1066, 1322, 1336
MfeI	CAATTG	1 cut(s)	844
MflI	RGATCY	3 cut(s)	327, 505, 916
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	4 cut(s)	185, 844, 1044, 1119
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	954
Mox20I	TGGCCA	1 cut(s)	618
MroNI	GCCGGC	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	694
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	7 cut(s)	351, 573, 591, 959, 1055, 1155, 1344
Msp20I	TGGCCA	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	2 cut(s)	173, 704
MspR9I	CCNGG	2 cut(s)	155, 772
MunI	CAATTG	1 cut(s)	844
Mva1269I	GAATGC	1 cut(s)	821
MvaI	CCWGG	2 cut(s)	155, 772
MwoI	GCNNNNNNNGC	4 cut(s)	308, 585, 594, 713
NaeI	GCCGGC	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	7 cut(s)	117, 327, 430, 505, 559, 644, 916
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	5 cut(s)	73, 244, 472, 760, 1083
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	3 cut(s)	5, 416, 751
NspI	RCATGY	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	1319
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	1 cut(s)	821
PdiI	GCCGGC	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	694
PfeI	GAWTC	2 cut(s)	77, 1162
PflFI	GACNNNGTC	1 cut(s)	749
PkrI	GCNGC	3 cut(s)	715, 856, 1287
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PshAI	GACNNNNGTC	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	1263
Psp6I	CCWGG	2 cut(s)	153, 770
PspFI	CCCAGC	2 cut(s)	176, 271
PspGI	CCWGG	2 cut(s)	153, 770
PspN4I	GGNNCC	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	924
PstNI	CAGNNNCTG	1 cut(s)	169
PsuI	RGATCY	3 cut(s)	327, 505, 916
PsyI	GACNNNGTC	1 cut(s)	749
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	5 cut(s)	269, 358, 442, 548, 1136
RsaNI	GTAC	5 cut(s)	268, 357, 441, 547, 1135
SapI	GCTCTTC	1 cut(s)	1319
SaqAI	TTAA	7 cut(s)	351, 573, 591, 959, 1055, 1155, 1344
SatI	GCNGC	3 cut(s)	714, 855, 1286
Sau3AI	GATC	7 cut(s)	117, 327, 430, 505, 559, 644, 916
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	155, 772
SfaNI	GCATC	2 cut(s)	196, 289
SfcI	CTRYAG	3 cut(s)	312, 920, 1401
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
Sse9I	AATT	4 cut(s)	185, 844, 1044, 1119
SsiI	CCGC	1 cut(s)	720
SspMI	CTAG	1 cut(s)	833
StyD4I	CCNGG	2 cut(s)	153, 770
StyI	CCWWGG	3 cut(s)	10, 756, 1059
TaaI	ACNGT	8 cut(s)	50, 356, 422, 440, 448, 463, 629, 1012
TaiI	ACGT	1 cut(s)	1221
TaqI	TCGA	4 cut(s)	643, 864, 1123, 1205
TasI	AATT	4 cut(s)	185, 844, 1044, 1119
TatI	WGTACW	2 cut(s)	356, 440
TfiI	GAWTC	2 cut(s)	77, 1162
Tru1I	TTAA	7 cut(s)	351, 573, 591, 959, 1055, 1155, 1344
Tru9I	TTAA	7 cut(s)	351, 573, 591, 959, 1055, 1155, 1344
TscAI	CASTG	2 cut(s)	421, 1228
TseFI	GTSAC	3 cut(s)	5, 416, 751
TseI	GCWGC	3 cut(s)	713, 854, 1285
Tsp45I	GTSAC	3 cut(s)	5, 416, 751
TspDTI	ATGAA	5 cut(s)	221, 485, 896, 1386, 1409
TspGWI	ACGGA	2 cut(s)	267, 489
TspRI	CASTG	2 cut(s)	421, 1228
Tth111I	GACNNNGTC	1 cut(s)	749
XagI	CCTNNNNNAGG	1 cut(s)	513
XapI	RAATTY	2 cut(s)	1044, 1119
XbaI	TCTAGA	1 cut(s)	832
XceI	RCATGY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	2 cut(s)	763, 903
XmiI	GTMKAC	1 cut(s)	1363
XmnI	GAANNNNTTC	1 cut(s)	694
XspI	CTAG	1 cut(s)	833
ZraI	GACGTC	1 cut(s)	1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.