Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004215

Physical Location & Seq

Genomic Coordinates Forward (+)

35976771 .. 36011565

Gene Structure 34795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG301800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCAGCCTGACGGAAACCTTGTTCTGTACCCAGCAAACTCTGAAAACTCTCCGGTAGATGCCTACTATGCTTCAGGTACTAATGGACTCTTGAACCTTCACCTCTATCTTGACAGTACAGATGGCAGTCTTGCTCTAATCAACACCAACAGCTCGGAAGTTTACAGAGTCATCAGTAGCGGTAATGATGATCTAGCCAATAACACTGTATATCGGGCAACTGTTGGCATAAACGGAGTATTAAGGGCGTATTCTCATCAGATGGATCCTAAGACAGGCAAACTTCAAGCACCTGTTATAATGTGGTACCAACCAAATAATCCTTGCGATGTTAAAGGCGTGTGTGGCCTTAACAGCTATTGCACACTCAATGATGACCAGCCAGACTGTCTTTGCCTTCCTGGATCAGATTACGCTGACCTCAACCGCAGGACTATGGGTTGCTTGAGAAACAATCCAGAACCGGCGTGTGTAGCTGGCGGGAAAGAGAATACAACCTTTTATGACATACTCACCATGGAAAATTTGGTCTTGGTAGATCCTCCAGACTTTGAAGCCAGAATGACCATGGAAGAATGCAAGAGCTCTTGTCTAGAGGACTGCAATTGTGGAGCAGCTCTGTTCGAGCAGACAAATTGTATGAAACAGAAGCCACCACTCAGATATGTGAGAAGAGATATGCAGAAATCCAACACTGCTTTCTTCAAGGTAAGCAAGTTAAGAAGAAGTCCTGAAAGCAAAAATAATGGAACTGAAACTAAAGAACCATTTCCGACGAATCCCACTACGGGCGTCATTGGCACCCAAATGGAAGCTGTTGTCAAAGGTCTTGATTTCCAACACAAAGCTAACCTGCCCTTCTCATGCTGCACCCAATATCCCCTATTGAAAAGACTCACCAATTATTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

304

Amino Acids

33.67

Weight (kDa)

5.33

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	95 - 135	9.2e-06	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004215)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23400
prunus_persica	Prupe.6G165300_v2.0.a1 Prupe.6G165500_v2.0.a1 Prupe.6G165500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118691 RchiOBHm_Chr2g0118751 RchiOBHm_Chr2g0118771
rosa_laevigata	RLG00000018420
rosa_multiflora	Rmu_co8322425.1_g000001 Rmu_sc0001814.1_g000023 Rmu_sc0001814.1_g000024 Rmu_sc0001814.1_g000031 Rmu_sc0002831.1_g000032 Rmu_sc0003564.1_g000001 Rmu_sc0004345.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124740 Rroxscaffold_2G00124750 Rroxscaffold_2G00124840 Rroxscaffold_2G00124870 Rroxscaffold_2G00124880 Rroxscaffold_2G00125530
rosa_rugosa	Rorug02G0218500
rosa_samantha	Rh2AG274800 Rh2AG275100 Rh2AG275400 Rh2BG286900 Rh2BG287300 Rh2DG282600 Rh2DG301600 Rh2DG301800
rosa_wichuraiana	Rw2G021860 Rw2G021880 Rw2G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	861
Acc65I	GGTACC	1 cut(s)	306
AccB1I	GGYRCC	2 cut(s)	306, 800
AciI	CCGC	3 cut(s)	180, 427, 480
AclWI	GGATC	4 cut(s)	260, 273, 412, 533
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	792
AfaI	GTAC	4 cut(s)	29, 79, 118, 308
AfiI	CCNNNNNNNGG	2 cut(s)	275, 788
AgsI	TTSAA	5 cut(s)	94, 287, 554, 706, 889
AjnI	CCWGG	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	7 cut(s)	153, 357, 476, 585, 617, 815, 848
AluI	AGCT	7 cut(s)	153, 357, 476, 585, 617, 815, 848
Alw21I	GWGCWC	1 cut(s)	587
AlwI	GGATC	4 cut(s)	260, 273, 412, 533
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	3 cut(s)	4, 614, 867
ApoI	RAATTY	1 cut(s)	523
Asp700I	GAANNNNTTC	1 cut(s)	768
Asp718I	GGTACC	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	92, 505, 889
BamHI	GGATCC	1 cut(s)	265
BanI	GGYRCC	2 cut(s)	306, 800
BanII	GRGCYC	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	587
BbvI	GCAGC	3 cut(s)	16, 626, 854
BccI	CCATC	2 cut(s)	116, 256
BciT130I	CCWGG	1 cut(s)	402
BfaI	CTAG	2 cut(s)	194, 593
BfuAI	ACCTGC	1 cut(s)	861
BisI	GCNGC	3 cut(s)	5, 615, 868
BlsI	GCNGC	3 cut(s)	6, 616, 869
Bme1390I	CCNGG	1 cut(s)	402
BmiI	GGNNCC	3 cut(s)	267, 308, 802
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	466
BsaHI	GRCGYC	1 cut(s)	792
BsaJI	CCNNGG	2 cut(s)	516, 567
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 788
Bse118I	RCCGGY	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	516, 567
BseLI	CCNNNNNNNGG	2 cut(s)	275, 788
BseMII	CTCAG	1 cut(s)	673
BseXI	GCAGC	3 cut(s)	16, 626, 854
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	853
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	2 cut(s)	306, 800
BsiHKAI	GWGCWC	1 cut(s)	587
BsiSI	CCGG	2 cut(s)	53, 464
BslI	CCNNNNNNNGG	2 cut(s)	275, 788
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	587
Bsp143I	GATC	4 cut(s)	190, 265, 404, 538
Bsp19I	CCATGG	2 cut(s)	516, 567
BspACI	CCGC	3 cut(s)	180, 427, 480
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	1 cut(s)	672
BspLI	GGNNCC	3 cut(s)	267, 308, 802
BspMI	ACCTGC	1 cut(s)	861
BspPI	GGATC	4 cut(s)	260, 273, 412, 533
BspT107I	GGYRCC	2 cut(s)	306, 800
BsrFI	RCCGGY	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	516, 567
BssMI	GATC	4 cut(s)	190, 265, 404, 538
BssNI	GRCGYC	1 cut(s)	792
BssT1I	CCWWGG	2 cut(s)	516, 567
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	4 cut(s)	116, 208, 223, 389
Bst6I	CTCTTC	1 cut(s)	667
BstACI	GRCGYC	1 cut(s)	792
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	270, 659
BstDSI	CCRYGG	2 cut(s)	516, 567
BstENI	CCTNNNNNAGG	1 cut(s)	273
BstKTI	GATC	4 cut(s)	193, 268, 407, 541
BstMBI	GATC	4 cut(s)	190, 265, 404, 538
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 345, 354, 473, 798
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstV1I	GCAGC	3 cut(s)	16, 626, 854
BstX2I	RGATCY	2 cut(s)	265, 538
BstYI	RGATCY	2 cut(s)	265, 538
BsuRI	GGCC	1 cut(s)	348
BtgI	CCRYGG	2 cut(s)	516, 567
BtgZI	GCGATG	1 cut(s)	342
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	2 cut(s)	204, 693
BveI	ACCTGC	1 cut(s)	861
Cac8I	GCNNGC	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	463
CseI	GACGC	1 cut(s)	781
Csp6I	GTAC	4 cut(s)	28, 78, 117, 307
CviAII	CATG	3 cut(s)	517, 568, 864
CviQI	GTAC	4 cut(s)	28, 78, 117, 307
DdeI	CTNAG	2 cut(s)	270, 659
DpnI	GATC	4 cut(s)	192, 267, 406, 540
DpnII	GATC	4 cut(s)	190, 265, 404, 538
Eam1104I	CTCTTC	1 cut(s)	667
EarI	CTCTTC	1 cut(s)	667
Ecl136II	GAGCTC	1 cut(s)	585
Eco130I	CCWWGG	2 cut(s)	516, 567
Eco24I	GRGCYC	1 cut(s)	587
Eco53kI	GAGCTC	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	585
EcoNI	CCTNNNNNAGG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	516, 567
EcoT38I	GRGCYC	1 cut(s)	587
ErhI	CCWWGG	2 cut(s)	516, 567
FaeI	CATG	3 cut(s)	520, 571, 867
FatI	CATG	3 cut(s)	516, 567, 863
FauI	CCCGC	1 cut(s)	473
Fnu4HI	GCNGC	3 cut(s)	5, 615, 868
FriOI	GRGCYC	1 cut(s)	587
Fsp4HI	GCNGC	3 cut(s)	5, 615, 868
FspBI	CTAG	2 cut(s)	194, 593
GluI	GCNGC	3 cut(s)	5, 615, 868
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	2 cut(s)	53, 464
HgaI	GACGC	1 cut(s)	781
Hin1I	GRCGYC	1 cut(s)	792
Hin1II	CATG	3 cut(s)	520, 571, 867
HinfI	GANTC	4 cut(s)	87, 168, 778, 894
HpaII	CCGG	2 cut(s)	53, 464
HphI	GGTGA	3 cut(s)	92, 505, 889
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	6 cut(s)	43, 157, 261, 409, 662, 774
Hpy188III	TCNNGA	7 cut(s)	91, 110, 458, 545, 593, 731, 830
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	778
HpyAV	CCTTC	3 cut(s)	107, 407, 868
HpyCH4III	ACNGT	4 cut(s)	116, 208, 223, 389
HpyCH4V	TGCA	6 cut(s)	4, 363, 579, 603, 682, 870
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 345, 354, 473, 798
HpyF3I	CTNAG	2 cut(s)	270, 659
Hsp92I	GRCGYC	1 cut(s)	792
Hsp92II	CATG	3 cut(s)	520, 571, 867
KpnI	GGTACC	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	190, 265, 404, 538
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	3 cut(s)	16, 626, 854
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	194, 593
MalI	GATC	4 cut(s)	192, 267, 406, 540
MboI	GATC	4 cut(s)	190, 265, 404, 538
MboII	GAAGA	4 cut(s)	584, 684, 694, 735
MfeI	CAATTG	1 cut(s)	604
MflI	RGATCY	2 cut(s)	265, 538
MhlI	GDGCHC	1 cut(s)	587
MluCI	AATT	4 cut(s)	523, 604, 634, 901
MlyI	GAGTC	3 cut(s)	81, 177, 888
MmeI	TCCRAC	3 cut(s)	714, 797, 862
MnlI	CCTC	4 cut(s)	113, 431, 552, 589
MroXI	GAANNNNTTC	1 cut(s)	768
MseI	TTAA	4 cut(s)	242, 333, 351, 719
MslI	CAYNNNNRTG	1 cut(s)	806
MspI	CCGG	2 cut(s)	53, 464
MspR9I	CCNGG	1 cut(s)	402
MunI	CAATTG	1 cut(s)	604
Mva1269I	GAATGC	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	5 cut(s)	68, 345, 354, 473, 798
NcoI	CCATGG	2 cut(s)	516, 567
NdeII	GATC	4 cut(s)	190, 265, 404, 538
NlaIII	CATG	3 cut(s)	520, 571, 867
NlaIV	GGNNCC	3 cut(s)	267, 308, 802
PctI	GAATGC	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	768
PfeI	GAWTC	1 cut(s)	778
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	3 cut(s)	6, 616, 869
PleI	GAGTC	3 cut(s)	81, 176, 888
PpsI	GAGTC	3 cut(s)	81, 176, 888
PsiI	TTATAA	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	267, 308, 802
PsuI	RGATCY	2 cut(s)	265, 538
RsaI	GTAC	4 cut(s)	29, 79, 118, 308
RsaNI	GTAC	4 cut(s)	28, 78, 117, 307
RseI	CAYNNNNRTG	1 cut(s)	806
SacI	GAGCTC	1 cut(s)	587
SaqAI	TTAA	4 cut(s)	242, 333, 351, 719
SatI	GCNGC	3 cut(s)	5, 615, 868
Sau3AI	GATC	4 cut(s)	190, 265, 404, 538
SchI	GAGTC	3 cut(s)	81, 177, 888
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	587
SfaNI	GCATC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	806
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	4 cut(s)	523, 604, 634, 901
SsiI	CCGC	3 cut(s)	180, 427, 480
SspMI	CTAG	2 cut(s)	194, 593
SstI	GAGCTC	1 cut(s)	587
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	2 cut(s)	516, 567
TaaI	ACNGT	4 cut(s)	116, 208, 223, 389
TaqI	TCGA	1 cut(s)	624
TasI	AATT	4 cut(s)	523, 604, 634, 901
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	778
Tru1I	TTAA	4 cut(s)	242, 333, 351, 719
Tru9I	TTAA	4 cut(s)	242, 333, 351, 719
TscAI	CASTG	2 cut(s)	211, 700
TseI	GCWGC	3 cut(s)	4, 614, 867
TspDTI	ATGAA	1 cut(s)	656
TspGWI	ACGGA	2 cut(s)	27, 249
TspRI	CASTG	2 cut(s)	211, 700
XagI	CCTNNNNNAGG	1 cut(s)	273
XapI	RAATTY	1 cut(s)	523
XbaI	TCTAGA	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	2 cut(s)	523, 565
XmnI	GAANNNNTTC	1 cut(s)	768
XspI	CTAG	2 cut(s)	194, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.