Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004215

Physical Location & Seq

Genomic Coordinates Reverse (-)

59326444 .. 59328373

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGCATGGGATTATAGCTTCCATTGCTTCCATTGGCATAGCTATCCTTCTCTTCTCACTATATTCTCTATGTGAAGGAGCTCAACAAAACAACAATTCTAGCCACGTACCCCTGGGATCTTCACTCTTTCCAGAAACTCACTCCAGCTCATGGCCTTCTGCCTCTGGCTGGTTCGAATTCGGCTTTTATCAGCAAGGAAGTGGTTTCGCTGTTGGAATTTGGTTGGTGGGAGTAGACCAAAACACAACTGTATGGACAGCAAACCGTGATGATCCCCCACTGCTGCCCTCACCAAATAATACAGTGAAGCTGCAGTTAGACACTGATGGCAAGCTTGTTCTAACGAGTGAACAAGGTCATAAAAAAGTAGCCATCGCAAGTGCAACAAACGGTTCTGTTTCCTCTGCCTCCATGCTTGATTCTGGAAACTTCGTTCTTTATGACGAAAACTATAAAGTGATCTGGGAGAGTTTCAGTCAACCTACTGATACTATCCTGGGTGGTCAGACTCTGCCGGCTGGGGGTCAATTAGTCTCCAGCTTGTCCGATGCTAACCAATCAACAGGACATTTTCGTCTCAACATGCAGGCTGACGGAAACGTTGTTCTGTACCCAGCAAACTCTGAAAACGTATCGACAAATGCCTACTATTCTACAGGTACTTACGGGATCTTGAACCTTGACCTCTATCTTAATAGTACAGATGGCATTCTAGCTCTAATCAACACCACCAACTCAAAAGTTTACAAAGTCATCAGTAGCGGTAATGATGATCTACCCAATAACACTGTATATAGGGCAACTGTTGGCATAAACGGAGTATTTAAGGCGTATTCTCATCAGATGGATCCTAAGACACGCAAACTCCAAGCACCTGCTATTATGTGGACTATGGGTTGCTTGAGAAACTATTCAGAACCGGCGTGTGCAGCTGGCGGGAAAGAGAATACAACCTTTTATGACATAGTCACCATGGAAAATATGGATTGGCCAGATGCTCCTGACTTTGTAGCCACAATGACCATGAAGGAATGCAATAGGTCTTGTCTAGAGGACTGCAATTGCCGAGCAGCTCTGTTCGACGGGACAAATTGTATGAAACAGAAGCCACCACTCAGATATGTAAGAAGAAATGTGCAGAAATCCACCACAGTTTTCTTCAAGGTGATCGAGCATGTTAACAAGAAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

397

Amino Acids

43.29

Weight (kDa)

5.65

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	82 - 171	6.2e-17	D-mannose binding lectin
PAN_2	PF08276	323 - 366	1.8e-06	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004215)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23400
prunus_persica	Prupe.6G165300_v2.0.a1 Prupe.6G165500_v2.0.a1 Prupe.6G165500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118691 RchiOBHm_Chr2g0118751 RchiOBHm_Chr2g0118771
rosa_laevigata	RLG00000018420
rosa_multiflora	Rmu_co8322425.1_g000001 Rmu_sc0001814.1_g000023 Rmu_sc0001814.1_g000024 Rmu_sc0001814.1_g000031 Rmu_sc0002831.1_g000032 Rmu_sc0003564.1_g000001 Rmu_sc0004345.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124740 Rroxscaffold_2G00124750 Rroxscaffold_2G00124840 Rroxscaffold_2G00124870 Rroxscaffold_2G00124880 Rroxscaffold_2G00125530
rosa_rugosa	Rorug02G0218500
rosa_samantha	Rh2AG274800 Rh2AG275100 Rh2AG275400 Rh2BG286900 Rh2BG287300 Rh2DG282600 Rh2DG301600 Rh2DG301800
rosa_wichuraiana	Rw2G021860 Rw2G021880 Rw2G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	883
AasI	GACNNNNNNGTC	1 cut(s)	573
Acc36I	ACCTGC	1 cut(s)	883
AccB7I	CCANNNNNTGG	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	2 cut(s)	762, 936
AclI	AACGTT	1 cut(s)	600
AclWI	GGATC	5 cut(s)	124, 266, 677, 842, 855
AcoI	YGGCCR	1 cut(s)	989
AcsI	RAATTY	2 cut(s)	176, 216
AfaI	GTAC	4 cut(s)	108, 611, 661, 700
AfiI	CCNNNNNNNGG	3 cut(s)	150, 168, 521
AgsI	TTSAA	2 cut(s)	676, 1162
AjnI	CCWGG	2 cut(s)	111, 495
AloI	GAACNNNNNNTCC	4 cut(s)	417, 449, 588, 620
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	2 cut(s)	538, 581
AlwI	GGATC	5 cut(s)	124, 266, 677, 842, 855
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	2 cut(s)	152, 989
ApeKI	GCWGC	4 cut(s)	283, 310, 929, 1070
ApoI	RAATTY	2 cut(s)	176, 216
Asp700I	GAANNNNTTC	1 cut(s)	910
AsuHPI	GGTGA	3 cut(s)	282, 961, 1177
AsuII	TTCGAA	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	991
BamHI	GGATCC	1 cut(s)	847
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	4 cut(s)	270, 297, 941, 1082
BccI	CCATC	4 cut(s)	320, 380, 698, 838
BciT130I	CCWGG	2 cut(s)	113, 497
BcoDI	GTCTC	2 cut(s)	538, 581
BfaI	CTAG	3 cut(s)	99, 713, 1049
BfmI	CTRYAG	2 cut(s)	311, 654
BfuAI	ACCTGC	1 cut(s)	883
BisI	GCNGC	4 cut(s)	284, 311, 930, 1071
BlsI	GCNGC	4 cut(s)	285, 312, 931, 1072
Bme1390I	CCNGG	2 cut(s)	113, 497
BmiI	GGNNCC	1 cut(s)	849
BmrFI	CCNGG	2 cut(s)	113, 497
BmsI	GCATC	2 cut(s)	538, 985
BpmI	CTGGAG	2 cut(s)	127, 520
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	922
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	4 cut(s)	111, 112, 496, 972
BsaXI	ACNNNNNCTCC	2 cut(s)	849, 879
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 168, 521
Bse118I	RCCGGY	2 cut(s)	514, 919
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	113, 497
BseDI	CCNNGG	4 cut(s)	111, 112, 496, 972
BseLI	CCNNNNNNNGG	3 cut(s)	150, 168, 521
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	1129
BseXI	GCAGC	4 cut(s)	270, 297, 941, 1082
BseYI	CCCAGC	2 cut(s)	518, 613
BsgI	GTGCAG	2 cut(s)	948, 1157
BshFI	GGCC	2 cut(s)	154, 991
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	515, 920
BslFI	GGGAC	1 cut(s)	1099
BslI	CCNNNNNNNGG	3 cut(s)	150, 168, 521
BsmAI	GTCTC	2 cut(s)	538, 581
BsmBI	CGTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	1099
BsmI	GAATGC	2 cut(s)	708, 1037
BsnI	GGCC	2 cut(s)	154, 991
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	7 cut(s)	116, 271, 459, 669, 772, 847, 1167
Bsp19I	CCATGG	1 cut(s)	972
BspACI	CCGC	2 cut(s)	762, 936
BspANI	GGCC	2 cut(s)	154, 991
BspCNI	CTCAG	1 cut(s)	1128
BspLI	GGNNCC	1 cut(s)	849
BspMAI	CTGCAG	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	883
BspPI	GGATC	5 cut(s)	124, 266, 677, 842, 855
BspT104I	TTCGAA	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	2 cut(s)	514, 919
BssAI	RCCGGY	2 cut(s)	514, 919
BssECI	CCNNGG	4 cut(s)	111, 112, 496, 972
BssMI	GATC	7 cut(s)	116, 271, 459, 669, 772, 847, 1167
BssT1I	CCWWGG	1 cut(s)	972
Bst2UI	CCWGG	2 cut(s)	113, 497
Bst4CI	ACNGT	7 cut(s)	250, 266, 304, 392, 790, 805, 1153
Bst6I	CTCTTC	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	106
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	4 cut(s)	332, 516, 588, 934
BstDEI	CTNAG	2 cut(s)	852, 1115
BstDSI	CCRYGG	1 cut(s)	972
BstKTI	GATC	7 cut(s)	119, 274, 462, 672, 775, 850, 1170
BstMAI	GTCTC	2 cut(s)	538, 581
BstMBI	GATC	7 cut(s)	116, 271, 459, 669, 772, 847, 1167
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 929
BstNI	CCWGG	2 cut(s)	113, 497
BstNSI	RCATGY	2 cut(s)	586, 1178
BstSCI	CCNGG	2 cut(s)	111, 495
BstSFI	CTRYAG	2 cut(s)	311, 654
BstV1I	GCAGC	4 cut(s)	270, 297, 941, 1082
BstX2I	RGATCY	3 cut(s)	116, 669, 847
BstYI	RGATCY	3 cut(s)	116, 669, 847
BsuRI	GGCC	2 cut(s)	154, 991
BtgI	CCRYGG	1 cut(s)	972
BtgZI	GCGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	4 cut(s)	278, 309, 321, 786
BveI	ACCTGC	1 cut(s)	883
Cac8I	GCNNGC	4 cut(s)	332, 516, 588, 934
CaiI	CAGNNNCTG	1 cut(s)	511
Cfr10I	RCCGGY	2 cut(s)	514, 919
Csp6I	GTAC	4 cut(s)	107, 610, 660, 699
CviAII	CATG	7 cut(s)	5, 150, 412, 583, 973, 1024, 1175
CviQI	GTAC	4 cut(s)	107, 610, 660, 699
DdeI	CTNAG	2 cut(s)	852, 1115
DpnI	GATC	7 cut(s)	118, 273, 461, 671, 774, 849, 1169
DpnII	GATC	7 cut(s)	116, 271, 459, 669, 772, 847, 1167
DrdI	GACNNNNNNGTC	1 cut(s)	573
DseDI	GACNNNNNNGTC	1 cut(s)	573
EaeI	YGGCCR	1 cut(s)	989
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	972
Eco24I	GRGCYC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	111, 495
EcoT14I	CCWWGG	1 cut(s)	972
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	972
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	7 cut(s)	8, 153, 415, 586, 976, 1027, 1178
FaqI	GGGAC	1 cut(s)	1099
FatI	CATG	7 cut(s)	4, 149, 411, 582, 972, 1023, 1174
FauI	CCCGC	1 cut(s)	929
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	4 cut(s)	284, 311, 930, 1071
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	4 cut(s)	284, 311, 930, 1071
FspBI	CTAG	3 cut(s)	99, 713, 1049
GluI	GCNGC	4 cut(s)	284, 311, 930, 1071
GsaI	CCCAGC	2 cut(s)	522, 617
GsuI	CTGGAG	2 cut(s)	127, 520
HaeIII	GGCC	2 cut(s)	154, 991
HapII	CCGG	2 cut(s)	515, 920
Hin1II	CATG	7 cut(s)	8, 153, 415, 586, 976, 1027, 1178
HincII	GTYRAC	2 cut(s)	479, 1180
HindII	GTYRAC	2 cut(s)	479, 1180
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	419, 508
HpaI	GTTAAC	1 cut(s)	1180
HpaII	CCGG	2 cut(s)	515, 920
HphI	GGTGA	3 cut(s)	282, 961, 1177
Hpy166II	GTNNAC	6 cut(s)	235, 350, 479, 745, 888, 1180
Hpy188I	TCNGA	6 cut(s)	507, 547, 625, 843, 916, 1118
Hpy188III	TCNNGA	5 cut(s)	131, 423, 673, 1001, 1049
Hpy8I	GTNNAC	6 cut(s)	235, 350, 479, 745, 888, 1180
Hpy99I	CGWCG	1 cut(s)	1085
HpyAV	CCTTC	4 cut(s)	56, 68, 165, 1021
HpyCH4III	ACNGT	7 cut(s)	250, 266, 304, 392, 790, 805, 1153
HpyCH4IV	ACGT	3 cut(s)	105, 600, 630
HpyCH4V	TGCA	8 cut(s)	4, 313, 383, 586, 929, 1035, 1059, 1138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 929
HpyF3I	CTNAG	2 cut(s)	852, 1115
HpySE526I	ACGT	3 cut(s)	105, 600, 630
Hsp92II	CATG	7 cut(s)	8, 153, 415, 586, 976, 1027, 1178
KroI	GCCGGC	1 cut(s)	514
KroNI	GCCGGC	1 cut(s)	516
KspAI	GTTAAC	1 cut(s)	1180
Kzo9I	GATC	7 cut(s)	116, 271, 459, 669, 772, 847, 1167
LmnI	GCTCC	2 cut(s)	77, 1003
Lsp1109I	GCAGC	4 cut(s)	270, 297, 941, 1082
LweI	GCATC	2 cut(s)	538, 985
MaeI	CTAG	3 cut(s)	99, 713, 1049
MaeII	ACGT	3 cut(s)	105, 600, 630
MaeIII	GTNAC	1 cut(s)	967
MalI	GATC	7 cut(s)	118, 273, 461, 671, 774, 849, 1169
MboI	GATC	7 cut(s)	116, 271, 459, 669, 772, 847, 1167
MboII	GAAGA	4 cut(s)	43, 111, 1140, 1150
MfeI	CAATTG	1 cut(s)	1060
MflI	RGATCY	3 cut(s)	116, 669, 847
MhlI	GDGCHC	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	991
MluCI	AATT	6 cut(s)	94, 176, 216, 527, 1060, 1090
MluNI	TGGCCA	1 cut(s)	991
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	6 cut(s)	172, 298, 412, 418, 695, 1045
Mox20I	TGGCCA	1 cut(s)	991
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	910
MscI	TGGCCA	1 cut(s)	991
MseI	TTAA	3 cut(s)	693, 825, 1179
Msp20I	TGGCCA	1 cut(s)	991
MspA1I	CMGCKG	1 cut(s)	932
MspI	CCGG	2 cut(s)	515, 920
MspR9I	CCNGG	2 cut(s)	113, 497
MunI	CAATTG	1 cut(s)	1060
Mva1269I	GAATGC	2 cut(s)	708, 1037
MvaI	CCWGG	2 cut(s)	113, 497
MwoI	GCNNNNNNNGC	2 cut(s)	23, 929
NaeI	GCCGGC	1 cut(s)	516
NcoI	CCATGG	1 cut(s)	972
NdeII	GATC	7 cut(s)	116, 271, 459, 669, 772, 847, 1167
NgoMIV	GCCGGC	1 cut(s)	514
NlaIII	CATG	7 cut(s)	8, 153, 415, 586, 976, 1027, 1178
NlaIV	GGNNCC	1 cut(s)	849
NmeAIII	GCCGAG	1 cut(s)	1091
NmuCI	GTSAC	1 cut(s)	967
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	586, 1178
NspV	TTCGAA	1 cut(s)	174
PaqCI	CACCTGC	1 cut(s)	883
PasI	CCCWGGG	1 cut(s)	112
PctI	GAATGC	2 cut(s)	708, 1037
PdiI	GCCGGC	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	910
PfeI	GAWTC	1 cut(s)	419
PflFI	GACNNNGTC	1 cut(s)	965
PflMI	CCANNNNNTGG	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	285, 312, 931, 1072
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
Ppu21I	YACGTR	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	82
Psp1406I	AACGTT	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	111, 495
PspFI	CCCAGC	2 cut(s)	518, 613
PspGI	CCWGG	2 cut(s)	111, 495
PspN4I	GGNNCC	1 cut(s)	849
PstI	CTGCAG	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	3 cut(s)	116, 669, 847
PsyI	GACNNNGTC	1 cut(s)	965
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	4 cut(s)	108, 611, 661, 700
RsaNI	GTAC	4 cut(s)	107, 610, 660, 699
SacI	GAGCTC	1 cut(s)	82
SaqAI	TTAA	3 cut(s)	693, 825, 1179
SatI	GCNGC	4 cut(s)	284, 311, 930, 1071
Sau3AI	GATC	7 cut(s)	116, 271, 459, 669, 772, 847, 1167
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	113, 497
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	538, 985
SfcI	CTRYAG	2 cut(s)	311, 654
SfuI	TTCGAA	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	901
SmoI	CTYRAG	1 cut(s)	901
Sse9I	AATT	6 cut(s)	94, 176, 216, 527, 1060, 1090
SsiI	CCGC	2 cut(s)	762, 936
SspMI	CTAG	3 cut(s)	99, 713, 1049
SstI	GAGCTC	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	111, 495
StyI	CCWWGG	1 cut(s)	972
TaaI	ACNGT	7 cut(s)	250, 266, 304, 392, 790, 805, 1153
TaiI	ACGT	3 cut(s)	108, 603, 633
TaqI	TCGA	4 cut(s)	174, 635, 1080, 1170
TasI	AATT	6 cut(s)	94, 176, 216, 527, 1060, 1090
TatI	WGTACW	1 cut(s)	698
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	3 cut(s)	693, 825, 1179
Tru9I	TTAA	3 cut(s)	693, 825, 1179
TscAI	CASTG	4 cut(s)	285, 309, 328, 793
TseFI	GTSAC	1 cut(s)	967
TseI	GCWGC	4 cut(s)	283, 310, 929, 1070
Tsp45I	GTSAC	1 cut(s)	967
TspDTI	ATGAA	2 cut(s)	1040, 1112
TspGWI	ACGGA	2 cut(s)	609, 831
TspRI	CASTG	4 cut(s)	285, 309, 328, 793
Tth111I	GACNNNGTC	1 cut(s)	965
Van91I	CCANNNNNTGG	1 cut(s)	150
XapI	RAATTY	2 cut(s)	176, 216
XbaI	TCTAGA	1 cut(s)	1048
XceI	RCATGY	2 cut(s)	586, 1178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	979
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	910
XspI	CTAG	3 cut(s)	99, 713, 1049
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.