Rh2AG274800

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
32853025 .. 32861706
8682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG274800.1

Sequence Viewer

Length: 1317 bp
ATGGCTTCCATTGGCATTGCTATCCTTCTCTTCTCACTATATTCTCTATGTGAAGGAGCTCAACAAAACAACGATTCTCGCCCCATACTCCCGGGATCTCCACTCTTTCCAGAAACTCACCCCAGCTCTTGGCCTTCTGCCTCTGGCCTGTTTGAATTCGGCTTTTATCAGCAAGGAAATGGTTTTGCTGTTGGAATTTGGTTGGTGGGAGTAGACGGAAACACAACTGTAAACACAACTGTATGGACAGCAAACCGTGATGAACCCCCACTGCTGCCCTCACCAAATAATACAGTGCAGCTGCAGTTAGCCAATGATGGCAAGCTTGTTCTAACCAGTGACCAAGGTCATAAAAAAGTGACCAAGGTCATCGCAAGTGCAACAAACGGTTCTGTTTCCTCTGCCTCCATGCTTGATTCTGGAAACTTCGTTCTTTTCGATGACAACAATAAAGTGATCTGGGAGAGTTTCAGTCATCCTACTGATACTATCCTGGGTGGTCAGACTCTGCCGGCTGGGGGTCAATTAGTCTCCAGTTTGTCCGATGCTGACCACTCAACAGGACATTTTCATCTCAACATGCAGCCTGACGGAAACCTTGTTCTGTACCCAGCAAACTCTGAAAACTCTCCGGTAGATGCCTACTATGCTTCAGGTACTGATGGGATCTTGAACCTTCACCTCTATCTTAACAGGACAGATGGCCATCTGGCTCTAATCAACACCACCAGCTCGGAAGTTTACAGTGTCATCAGTAAGGATGGTGGTAGTGATGTTCTAGCCATTAACAGTGTATATCGGGCAACTGTTAGCGTGAACGGAGTTCTACGGGTGTATTCTCATCAGATGGATCCTGACAAAGGCAAACTCCAAGCACCTGTTATTATGGGGTACAAACCAGATGATCCTTGCGATGTTAGGGGCGTGTGTGGCCTTAACAGCTATTGCACACTCAATGATGCCCAACCAGATTGTCATTGCCTTCCTGGATCAGATTACGCTGACCCCAACAGCATGACTATGGGTTGCTTGAGAAACTATTCAGAACCGGCATGTGCAGCTGGCGGGAAAGAGAATACAACCTTTTATGACATAGTCACCATAGAAAATATGGCCTGGGTAGATACTCCTGACTTTGAAGCCACAATGACCATAGAAGAATGCAAGAGGTCTTGTCTAGAGGACTGCAATTGTGGAGCAGCTCTGTTCGACCAGAGTCAGCAGACAAAGTGTATGAAACATAAGCCACCACTCAGATATTGGAGAAGAGATCTACAGAAATCCAACACGGCTTTCTTCAAGGGAAATGAGGATTGA

Protein Analysis

438

Amino Acids

47.43

Weight (kDa)

4.76

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 79 - 170 3.2e-18 D-mannose binding lectin
PAN_2 PF08276 366 - 412 3.1e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 129
AccI GTMKAC 1 cut(s) 213
AciI CCGC 1 cut(s) 1065
AclWI GGATC 6 cut(s) 103, 674, 845, 858, 899, 997
AcoI YGGCCR 1 cut(s) 703
AcsI RAATTY 2 cut(s) 155, 195
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 3 cut(s) 608, 658, 893
AfiI CCNNNNNNNGG 3 cut(s) 129, 518, 860
AgsI TTSAA 4 cut(s) 155, 673, 1139, 1300
AjnI CCWGG 3 cut(s) 492, 985, 1115
AjuI GAANNNNNNNTTGG 2 cut(s) 1277, 1309
AloI GAACNNNNNNTCC 4 cut(s) 414, 446, 585, 617
AluBI AGCT 8 cut(s) 59, 126, 301, 325, 732, 942, 1061, 1202
AluI AGCT 8 cut(s) 59, 126, 301, 325, 732, 942, 1061, 1202
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 6 cut(s) 103, 674, 845, 858, 899, 997
AlwNI CAGNNNCTG 2 cut(s) 508, 659
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 5 cut(s) 131, 145, 703, 931, 1113
ApeKI GCWGC 6 cut(s) 274, 298, 301, 583, 1058, 1199
ApoI RAATTY 2 cut(s) 155, 195
Asp700I GAANNNNTTC 1 cut(s) 1039
AsuC2I CCSGG 2 cut(s) 92, 93
AsuHPI GGTGA 4 cut(s) 110, 273, 671, 1090
AvaI CYCGRG 1 cut(s) 91
BalI TGGCCA 1 cut(s) 705
BamHI GGATCC 1 cut(s) 850
BanII GRGCYC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 6 cut(s) 261, 288, 310, 595, 1070, 1211
BccI CCATC 6 cut(s) 311, 656, 695, 714, 755, 841
BceAI ACGGC 1 cut(s) 1305
BciT130I CCWGG 3 cut(s) 494, 987, 1117
BcnI CCSGG 2 cut(s) 92, 93
BcoDI GTCTC 1 cut(s) 535
BfaI CTAG 2 cut(s) 779, 1178
BfmI CTRYAG 2 cut(s) 302, 1274
BglII AGATCT 1 cut(s) 1270
BisI GCNGC 6 cut(s) 275, 299, 302, 584, 1059, 1200
BlsI GCNGC 6 cut(s) 276, 300, 303, 585, 1060, 1201
Bme1390I CCNGG 5 cut(s) 92, 93, 494, 987, 1117
BmeT110I CYCGRG 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 852
BmrFI CCNGG 5 cut(s) 92, 93, 494, 987, 1117
BmsI GCATC 3 cut(s) 535, 628, 949
BoxI GACNNNNGTC 3 cut(s) 345, 365, 1215
BpmI CTGGAG 1 cut(s) 517
BpuEI CTTGAG 1 cut(s) 1051
BpuMI CCSGG 2 cut(s) 92, 93
BsaBI GATNNNNATC 1 cut(s) 705
BsaJI CCNNGG 5 cut(s) 91, 343, 363, 493, 1116
BsaWI WCCGGW 1 cut(s) 631
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 518, 860
Bse118I RCCGGY 2 cut(s) 511, 1048
Bse1I ACTGG 2 cut(s) 336, 534
Bse3DI GCAATG 2 cut(s) 15, 976
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 3 cut(s) 494, 987, 1117
BseDI CCNNGG 5 cut(s) 91, 343, 363, 493, 1116
BseGI GGATG 2 cut(s) 475, 766
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 3 cut(s) 129, 518, 860
BseMI GCAATG 2 cut(s) 15, 976
BseMII CTCAG 1 cut(s) 1267
BseNI ACTGG 2 cut(s) 336, 534
BseXI GCAGC 6 cut(s) 261, 288, 310, 595, 1070, 1211
BseYI CCCAGC 3 cut(s) 122, 515, 610
BsgI GTGCAG 2 cut(s) 317, 1077
BshFI GGCC 5 cut(s) 133, 147, 705, 933, 1115
BsiHKAI GWGCWC 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 4 cut(s) 92, 512, 632, 1049
BslI CCNNNNNNNGG 3 cut(s) 129, 518, 860
BsmAI GTCTC 1 cut(s) 535
BsmI GAATGC 1 cut(s) 1166
BsnI GGCC 5 cut(s) 133, 147, 705, 933, 1115
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 7 cut(s) 95, 456, 666, 850, 904, 989, 1270
BspACI CCGC 1 cut(s) 1065
BspANI GGCC 5 cut(s) 133, 147, 705, 933, 1115
BspCNI CTCAG 1 cut(s) 1266
BspLI GGNNCC 1 cut(s) 852
BspMAI CTGCAG 1 cut(s) 306
BspPI GGATC 6 cut(s) 103, 674, 845, 858, 899, 997
BsrDI GCAATG 2 cut(s) 15, 976
BsrFI RCCGGY 2 cut(s) 511, 1048
BsrI ACTGG 2 cut(s) 336, 534
BssAI RCCGGY 2 cut(s) 511, 1048
BssECI CCNNGG 5 cut(s) 91, 343, 363, 493, 1116
BssMI GATC 7 cut(s) 95, 456, 666, 850, 904, 989, 1270
BssT1I CCWWGG 2 cut(s) 343, 363
Bst2UI CCWGG 3 cut(s) 494, 987, 1117
Bst4CI ACNGT 8 cut(s) 229, 241, 257, 295, 389, 746, 791, 808
Bst6I CTCTTC 2 cut(s) 35, 1261
BstC8I GCNNGC 3 cut(s) 323, 513, 1063
BstDEI CTNAG 1 cut(s) 1253
BstENI CCTNNNNNAGG 1 cut(s) 858
BstF5I GGATG 2 cut(s) 475, 766
BstKTI GATC 7 cut(s) 98, 459, 669, 853, 907, 992, 1273
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 7 cut(s) 95, 456, 666, 850, 904, 989, 1270
BstMWI GCNNNNNNNGC 4 cut(s) 647, 930, 939, 1058
BstNI CCWGG 3 cut(s) 494, 987, 1117
BstNSI RCATGY 2 cut(s) 583, 1056
BstPAI GACNNNNGTC 3 cut(s) 345, 365, 1215
BstSCI CCNGG 5 cut(s) 90, 91, 492, 985, 1115
BstSFI CTRYAG 2 cut(s) 302, 1274
BstV1I GCAGC 6 cut(s) 261, 288, 310, 595, 1070, 1211
BstX2I RGATCY 4 cut(s) 95, 666, 850, 1270
BstYI RGATCY 4 cut(s) 95, 666, 850, 1270
BsuRI GGCC 5 cut(s) 133, 147, 705, 933, 1115
BtgZI GCGATG 2 cut(s) 355, 927
BtsCI GGATG 2 cut(s) 475, 766
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 5 cut(s) 269, 300, 343, 751, 796
Cac8I GCNNGC 3 cut(s) 323, 513, 1063
CaiI CAGNNNCTG 2 cut(s) 508, 659
Cfr10I RCCGGY 2 cut(s) 511, 1048
Cfr9I CCCGGG 1 cut(s) 91
Csp6I GTAC 3 cut(s) 607, 657, 892
CviAII CATG 4 cut(s) 409, 580, 1015, 1053
CviQI GTAC 3 cut(s) 607, 657, 892
DdeI CTNAG 1 cut(s) 1253
DpnI GATC 7 cut(s) 97, 458, 668, 852, 906, 991, 1272
DpnII GATC 7 cut(s) 95, 456, 666, 850, 904, 989, 1270
EaeI YGGCCR 1 cut(s) 703
Eam1104I CTCTTC 2 cut(s) 35, 1261
EarI CTCTTC 2 cut(s) 35, 1261
Ecl136II GAGCTC 1 cut(s) 59
Eco130I CCWWGG 2 cut(s) 343, 363
Eco24I GRGCYC 1 cut(s) 61
Eco53kI GAGCTC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 59
EcoNI CCTNNNNNAGG 1 cut(s) 858
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 3 cut(s) 492, 985, 1115
EcoT14I CCWWGG 2 cut(s) 343, 363
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 2 cut(s) 343, 363
FaeI CATG 4 cut(s) 412, 583, 1018, 1056
FatI CATG 4 cut(s) 408, 579, 1014, 1052
FauI CCCGC 1 cut(s) 1058
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 6 cut(s) 275, 299, 302, 584, 1059, 1200
FokI GGATG 2 cut(s) 462, 773
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 6 cut(s) 275, 299, 302, 584, 1059, 1200
FspBI CTAG 2 cut(s) 779, 1178
GluI GCNGC 6 cut(s) 275, 299, 302, 584, 1059, 1200
GsaI CCCAGC 3 cut(s) 126, 519, 614
GsuI CTGGAG 1 cut(s) 517
HaeIII GGCC 5 cut(s) 133, 147, 705, 933, 1115
HapII CCGG 4 cut(s) 92, 512, 632, 1049
Hin1II CATG 4 cut(s) 412, 583, 1018, 1056
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 4 cut(s) 74, 416, 505, 1216
HpaII CCGG 4 cut(s) 92, 512, 632, 1049
HphI GGTGA 4 cut(s) 110, 273, 671, 1090
Hpy166II GTNNAC 4 cut(s) 214, 232, 742, 817
Hpy188I TCNGA 8 cut(s) 504, 544, 622, 736, 846, 994, 1045, 1256
Hpy188III TCNNGA 6 cut(s) 110, 420, 670, 854, 1130, 1178
Hpy8I GTNNAC 4 cut(s) 214, 232, 742, 817
HpyAV CCTTC 5 cut(s) 35, 47, 144, 686, 992
HpyCH4III ACNGT 8 cut(s) 229, 241, 257, 295, 389, 746, 791, 808
HpyCH4V TGCA 8 cut(s) 298, 304, 380, 583, 948, 1058, 1164, 1188
HpyF10VI GCNNNNNNNGC 4 cut(s) 647, 930, 939, 1058
HpyF3I CTNAG 1 cut(s) 1253
Hsp92II CATG 4 cut(s) 412, 583, 1018, 1056
KroI GCCGGC 1 cut(s) 511
KroNI GCCGGC 1 cut(s) 513
Kzo9I GATC 7 cut(s) 95, 456, 666, 850, 904, 989, 1270
LmnI GCTCC 2 cut(s) 56, 1196
Lsp1109I GCAGC 6 cut(s) 261, 288, 310, 595, 1070, 1211
LweI GCATC 3 cut(s) 535, 628, 949
MaeI CTAG 2 cut(s) 779, 1178
MaeIII GTNAC 3 cut(s) 338, 358, 1096
MalI GATC 7 cut(s) 97, 458, 668, 852, 906, 991, 1272
MboI GATC 7 cut(s) 95, 456, 666, 850, 904, 989, 1270
MboII GAAGA 4 cut(s) 22, 1169, 1278, 1288
MfeI CAATTG 1 cut(s) 1189
MflI RGATCY 4 cut(s) 95, 666, 850, 1270
MhlI GDGCHC 1 cut(s) 61
MlsI TGGCCA 1 cut(s) 705
MluCI AATT 4 cut(s) 155, 195, 524, 1189
MluNI TGGCCA 1 cut(s) 705
MlyI GAGTC 2 cut(s) 499, 1225
MmeI TCCRAC 2 cut(s) 172, 1308
MnlI CCTC 8 cut(s) 151, 289, 409, 415, 692, 1161, 1174, 1303
Mox20I TGGCCA 1 cut(s) 705
MroNI GCCGGC 1 cut(s) 511
MroXI GAANNNNTTC 1 cut(s) 1039
MscI TGGCCA 1 cut(s) 705
MseI TTAA 3 cut(s) 690, 786, 936
MslI CAYNNNNRTG 1 cut(s) 1019
Msp20I TGGCCA 1 cut(s) 705
MspA1I CMGCKG 2 cut(s) 301, 1061
MspI CCGG 4 cut(s) 92, 512, 632, 1049
MspR9I CCNGG 5 cut(s) 92, 93, 494, 987, 1117
MunI CAATTG 1 cut(s) 1189
Mva1269I GAATGC 1 cut(s) 1166
MvaI CCWGG 3 cut(s) 494, 987, 1117
MwoI GCNNNNNNNGC 4 cut(s) 647, 930, 939, 1058
NaeI GCCGGC 1 cut(s) 513
NciI CCSGG 2 cut(s) 92, 93
NdeII GATC 7 cut(s) 95, 456, 666, 850, 904, 989, 1270
NgoMIV GCCGGC 1 cut(s) 511
NlaIII CATG 4 cut(s) 412, 583, 1018, 1056
NlaIV GGNNCC 1 cut(s) 852
NmuCI GTSAC 3 cut(s) 338, 358, 1096
NspI RCATGY 2 cut(s) 583, 1056
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 1 cut(s) 1166
PdiI GCCGGC 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 1039
PfeI GAWTC 2 cut(s) 74, 416
PflFI GACNNNGTC 1 cut(s) 1094
PflMI CCANNNNNTGG 1 cut(s) 129
PfoI TCCNGGA 1 cut(s) 985
PkrI GCNGC 6 cut(s) 276, 300, 303, 585, 1060, 1201
PleI GAGTC 2 cut(s) 499, 1224
PpsI GAGTC 2 cut(s) 499, 1224
PshAI GACNNNNGTC 3 cut(s) 345, 365, 1215
Psp124BI GAGCTC 1 cut(s) 61
Psp6I CCWGG 3 cut(s) 492, 985, 1115
PspFI CCCAGC 3 cut(s) 122, 515, 610
PspGI CCWGG 3 cut(s) 492, 985, 1115
PspN4I GGNNCC 1 cut(s) 852
PstI CTGCAG 1 cut(s) 306
PstNI CAGNNNCTG 2 cut(s) 508, 659
PsuI RGATCY 4 cut(s) 95, 666, 850, 1270
PsyI GACNNNGTC 1 cut(s) 1094
PvuII CAGCTG 2 cut(s) 301, 1061
RsaI GTAC 3 cut(s) 608, 658, 893
RsaNI GTAC 3 cut(s) 607, 657, 892
RseI CAYNNNNRTG 1 cut(s) 1019
SacI GAGCTC 1 cut(s) 61
SaqAI TTAA 3 cut(s) 690, 786, 936
SatI GCNGC 6 cut(s) 275, 299, 302, 584, 1059, 1200
Sau3AI GATC 7 cut(s) 95, 456, 666, 850, 904, 989, 1270
SchI GAGTC 2 cut(s) 499, 1225
ScrFI CCNGG 5 cut(s) 92, 93, 494, 987, 1117
SduI GDGCHC 1 cut(s) 61
SfaNI GCATC 3 cut(s) 535, 628, 949
SfcI CTRYAG 2 cut(s) 302, 1274
SmaI CCCGGG 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 1019
SmlI CTYRAG 1 cut(s) 1030
SmoI CTYRAG 1 cut(s) 1030
Sse9I AATT 4 cut(s) 155, 195, 524, 1189
SsiI CCGC 1 cut(s) 1065
SspMI CTAG 2 cut(s) 779, 1178
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 5 cut(s) 90, 91, 492, 985, 1115
StyI CCWWGG 2 cut(s) 343, 363
TaaI ACNGT 8 cut(s) 229, 241, 257, 295, 389, 746, 791, 808
TaqI TCGA 2 cut(s) 438, 1209
TasI AATT 4 cut(s) 155, 195, 524, 1189
TfiI GAWTC 2 cut(s) 74, 416
Tru1I TTAA 3 cut(s) 690, 786, 936
Tru9I TTAA 3 cut(s) 690, 786, 936
TscAI CASTG 5 cut(s) 276, 300, 343, 751, 796
TseFI GTSAC 3 cut(s) 338, 358, 1096
TseI GCWGC 6 cut(s) 274, 298, 301, 583, 1058, 1199
Tsp45I GTSAC 3 cut(s) 338, 358, 1096
TspDTI ATGAA 3 cut(s) 276, 560, 1250
TspGWI ACGGA 3 cut(s) 231, 606, 834
TspMI CCCGGG 1 cut(s) 91
TspRI CASTG 5 cut(s) 276, 300, 343, 751, 796
Tth111I GACNNNGTC 1 cut(s) 1094
Van91I CCANNNNNTGG 1 cut(s) 129
XagI CCTNNNNNAGG 1 cut(s) 858
XapI RAATTY 2 cut(s) 155, 195
XbaI TCTAGA 1 cut(s) 1177
XceI RCATGY 2 cut(s) 583, 1056
XcmI CCANNNNNNNNNTGG 2 cut(s) 1108, 1257
XmaI CCCGGG 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 1039
XspI CTAG 2 cut(s) 779, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.