Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8322425.1

Orthogroup ID

OG0004215

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 773

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8322425.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 772 bp

atgcgtgattctggaaacttcgttctttacgacgaaaactataaagtgatctgggagagtttcagtcatcctactgataccatcctgggtggtcagactctgccggctgggggtcaattagtctccagtttgtccgatgctgaccactcaacaggacattttcatctcaacatgcagactgacggaaaccttgttctctacccagcaaactctgaaaactctccgatagatgcctactattcttcagatactaatgggatcttgaaccatgacctctatcttaacagtacagatggtggtcttgctctaatcaacaccaccagctcggaagtcatcagtgacggtaatgatgacctagccaataacaatgtatatcgggcaactgttggcataaacggagtattaagggtgtattctcatcagatggatcctgccaaacgcaaactccaagcaccttttattttgtggtccaaaccagatgatccttgcgatgttaaaggtgtgtgtggccttaacagctattgcacactcaatgatggccaaccagactgtctttgccttcctggatcagattacgctgacctcaacggcaggactatgggttgcttgagaaactattcagaaccggcgtgtgcagctggcgggaaagagaatacaaccttttatgacatagtcaccatggaaaatatggactgggtagatactcctgactttgaagccacaatgaccatagaagaatgcaagaggtcttgtctagaggactgcaattgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

257

Amino Acids

28.12

Weight (kDa)

4.24

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004215)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23400
prunus_persica	Prupe.6G165300_v2.0.a1 Prupe.6G165500_v2.0.a1 Prupe.6G165500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118691 RchiOBHm_Chr2g0118751 RchiOBHm_Chr2g0118771
rosa_laevigata	RLG00000018420
rosa_multiflora	Rmu_co8322425.1_g000001 Rmu_sc0001814.1_g000023 Rmu_sc0001814.1_g000024 Rmu_sc0001814.1_g000031 Rmu_sc0002831.1_g000032 Rmu_sc0003564.1_g000001 Rmu_sc0004345.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124740 Rroxscaffold_2G00124750 Rroxscaffold_2G00124840 Rroxscaffold_2G00124870 Rroxscaffold_2G00124880 Rroxscaffold_2G00125530
rosa_rugosa	Rorug02G0218500
rosa_samantha	Rh2AG274800 Rh2AG275100 Rh2AG275400 Rh2BG286900 Rh2BG287300 Rh2DG282600 Rh2DG301600 Rh2DG301800
rosa_wichuraiana	Rw2G021860 Rw2G021880 Rw2G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	5 cut(s)	266, 422, 435, 476, 574
AcoI	YGGCCR	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	265, 716
AjnI	CCWGG	2 cut(s)	84, 562
AloI	GAACNNNNNNTCC	3 cut(s)	38, 177, 209
AluBI	AGCT	3 cut(s)	324, 519, 638
AluI	AGCT	3 cut(s)	324, 519, 638
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	5 cut(s)	266, 422, 435, 476, 574
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	2 cut(s)	508, 538
ApeKI	GCWGC	1 cut(s)	635
Asp700I	GAANNNNTTC	1 cut(s)	616
AspS9I	GGNCC	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	667
AvaII	GGWCC	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	540
BamHI	GGATCC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	4 cut(s)	89, 287, 418, 530
BceAI	ACGGC	1 cut(s)	604
BciT130I	CCWGG	2 cut(s)	86, 564
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	2 cut(s)	356, 755
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
Bme1390I	CCNGG	2 cut(s)	86, 564
Bme18I	GGWCC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	86, 564
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	2 cut(s)	127, 220
BmuI	ACTGGG	1 cut(s)	703
BpmI	CTGGAG	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	628
BsaJI	CCNNGG	2 cut(s)	85, 678
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse118I	RCCGGY	2 cut(s)	103, 625
Bse1I	ACTGG	2 cut(s)	126, 698
BseBI	CCWGG	2 cut(s)	86, 564
BseDI	CCNNGG	2 cut(s)	85, 678
BseGI	GGATG	2 cut(s)	67, 81
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseNI	ACTGG	2 cut(s)	126, 698
BseXI	GCAGC	1 cut(s)	647
BseYI	CCCAGC	2 cut(s)	107, 202
BsgI	GTGCAG	1 cut(s)	654
BshFI	GGCC	2 cut(s)	510, 540
BsiSI	CCGG	2 cut(s)	104, 626
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	743
BsnI	GGCC	2 cut(s)	510, 540
Bsp143I	GATC	5 cut(s)	48, 258, 427, 481, 566
Bsp19I	CCATGG	1 cut(s)	678
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	2 cut(s)	510, 540
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	5 cut(s)	266, 422, 435, 476, 574
BsrFI	RCCGGY	2 cut(s)	103, 625
BsrI	ACTGG	2 cut(s)	126, 698
BssAI	RCCGGY	2 cut(s)	103, 625
BssECI	CCNNGG	2 cut(s)	85, 678
BssMI	GATC	5 cut(s)	48, 258, 427, 481, 566
BssT1I	CCWWGG	1 cut(s)	678
Bst2UI	CCWGG	2 cut(s)	86, 564
Bst4CI	ACNGT	4 cut(s)	287, 344, 385, 551
BstC8I	GCNNGC	2 cut(s)	105, 640
BstDSI	CCRYGG	1 cut(s)	678
BstF5I	GGATG	2 cut(s)	67, 81
BstKTI	GATC	5 cut(s)	51, 261, 430, 484, 569
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	5 cut(s)	48, 258, 427, 481, 566
BstMWI	GCNNNNNNNGC	2 cut(s)	516, 635
BstNI	CCWGG	2 cut(s)	86, 564
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	84, 562
BstV1I	GCAGC	1 cut(s)	647
BstX2I	RGATCY	2 cut(s)	258, 427
BstYI	RGATCY	2 cut(s)	258, 427
BsuRI	GGCC	2 cut(s)	510, 540
BtgI	CCRYGG	1 cut(s)	678
BtgZI	GCGATG	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	67, 81
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	2 cut(s)	105, 640
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr10I	RCCGGY	2 cut(s)	103, 625
Cfr13I	GGNCC	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	3 cut(s)	172, 269, 679
CviJI	RGCY	8 cut(s)	107, 324, 359, 510, 519, 540, 638, 719
CviKI_1	RGCY	8 cut(s)	107, 324, 359, 510, 519, 540, 638, 719
CviQI	GTAC	1 cut(s)	288
DpnI	GATC	5 cut(s)	50, 260, 429, 483, 568
DpnII	GATC	5 cut(s)	48, 258, 427, 481, 566
EaeI	YGGCCR	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	468
Eco57I	CTGAAG	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	84, 562
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	3 cut(s)	175, 272, 682
FatI	CATG	3 cut(s)	171, 268, 678
FauI	CCCGC	1 cut(s)	635
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	2 cut(s)	54, 68
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	2 cut(s)	356, 755
GluI	GCNGC	1 cut(s)	636
GsaI	CCCAGC	2 cut(s)	111, 206
GsuI	CTGGAG	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	510, 540
HapII	CCGG	2 cut(s)	104, 626
Hin1II	CATG	3 cut(s)	175, 272, 682
HinfI	GANTC	2 cut(s)	8, 97
HpaII	CCGG	2 cut(s)	104, 626
HphI	GGTGA	1 cut(s)	667
Hpy188I	TCNGA	9 cut(s)	96, 136, 214, 225, 247, 328, 423, 571, 622
Hpy188III	TCNNGA	4 cut(s)	12, 262, 707, 755
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	4 cut(s)	287, 344, 385, 551
HpyCH4V	TGCA	5 cut(s)	175, 525, 635, 741, 765
HpyF10VI	GCNNNNNNNGC	2 cut(s)	516, 635
Hsp92II	CATG	3 cut(s)	175, 272, 682
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Kzo9I	GATC	5 cut(s)	48, 258, 427, 481, 566
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	2 cut(s)	127, 220
MaeI	CTAG	2 cut(s)	356, 755
MaeIII	GTNAC	2 cut(s)	338, 673
MalI	GATC	5 cut(s)	50, 260, 429, 483, 568
MboI	GATC	5 cut(s)	48, 258, 427, 481, 566
MboII	GAAGA	2 cut(s)	234, 746
MfeI	CAATTG	1 cut(s)	766
MflI	RGATCY	2 cut(s)	258, 427
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	2 cut(s)	116, 766
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	4 cut(s)	284, 593, 738, 751
Mox20I	TGGCCA	1 cut(s)	540
MroNI	GCCGGC	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	616
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	4 cut(s)	282, 404, 495, 513
Msp20I	TGGCCA	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	2 cut(s)	104, 626
MspR9I	CCNGG	2 cut(s)	86, 564
MunI	CAATTG	1 cut(s)	766
Mva1269I	GAATGC	1 cut(s)	743
MvaI	CCWGG	2 cut(s)	86, 564
MwoI	GCNNNNNNNGC	2 cut(s)	516, 635
NaeI	GCCGGC	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	678
NdeII	GATC	5 cut(s)	48, 258, 427, 481, 566
NgoMIV	GCCGGC	1 cut(s)	103
NlaIII	CATG	3 cut(s)	175, 272, 682
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	2 cut(s)	338, 673
NspI	RCATGY	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	743
PdiI	GCCGGC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	616
PfeI	GAWTC	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	671
PfoI	TCCNGGA	1 cut(s)	562
PkrI	GCNGC	1 cut(s)	637
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	84, 562
PspFI	CCCAGC	2 cut(s)	107, 202
PspGI	CCWGG	2 cut(s)	84, 562
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	258, 427
PsyI	GACNNNGTC	1 cut(s)	671
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	282, 404, 495, 513
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	5 cut(s)	48, 258, 427, 481, 566
Sau96I	GGNCC	1 cut(s)	468
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	86, 564
SfaNI	GCATC	2 cut(s)	127, 220
SinI	GGWCC	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	607
SmoI	CTYRAG	1 cut(s)	607
Sse9I	AATT	2 cut(s)	116, 766
SsiI	CCGC	1 cut(s)	642
SspMI	CTAG	2 cut(s)	356, 755
StyD4I	CCNGG	2 cut(s)	84, 562
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	4 cut(s)	287, 344, 385, 551
TasI	AATT	2 cut(s)	116, 766
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	282, 404, 495, 513
Tru9I	TTAA	4 cut(s)	282, 404, 495, 513
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	2 cut(s)	338, 673
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	2 cut(s)	338, 673
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	2 cut(s)	198, 411
TspRI	CASTG	1 cut(s)	343
Tth111I	GACNNNGTC	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	468
XbaI	TCTAGA	1 cut(s)	754
XceI	RCATGY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	685
XmnI	GAANNNNTTC	1 cut(s)	616
XspI	CTAG	2 cut(s)	356, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.