Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004215

Physical Location & Seq

Genomic Coordinates Forward (+)

31667766 .. 31668815

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG286900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCTTGATTCTGGAAACTTCGTTGTTTACAACGAAAATGATGAAGTGATCTGGGAGAGTTTCAATCATCCTACTGATACTATCCTAGGTGGTCAGACTCTGCCGACTGGGGGTCAATTAGTCTCCAGTTTGTCCGATGCTGGCCACTCAACAGGACATTTTCATCTCAACATGCAGACTGACGGAAACCTTGTTCTGTACCCAGCGAACTCTGAAAACTCTCCAATAGATGCCTATTATGCTACAGATACTAATGGGATCTTGAACCTTACAGATGGCGGTCTTGCTCTAATCAACACTACCAGCTCGAAAGTTTACAGTGTCATCAGTAGGGATGGTGGTAATGATGATCTAATTCTAGCCAATAACACTGTATATCGGGCAACTGTTGGCATAAACGGAGTATTAAGGATGTATTCTCATCAGATGGATCCTAAGGCAGGCAAACTCCAAGCATCTGTTATTATGTGGTACAAACCAACTGATCCTTACGATGTTAATGGCTTGTGTGGCCTTAACAGCTATTGCACACTCAATGATGGCCAACCAGACTGTCTATGCCTTCCTGGATCAGATTACCCTGACCTCAACAACAGGACTATGGGTTGCTTGAGAAACTATTCAGAACCGGCATGTGCAGCTGGCGGGAAAGAGAATACAACCTTTTATGACATAATCACCATGGAAAATATGGCCTGGACAGATACTCCTGACTTTGAAGCCACAATGACCATGGAAGAATGCAAGAGGACTTGTCTAGAGGACTGCATTTGCGGAGCAGCTCTGTTCGATGGGACAAATTGTATGAAACAGAAGCCACCACTCAGATATGTGAGAAGAAATATGCAGAAATCCACCACGGCTTTGTTCAAGGTGAGCATGTTAACAAGAAGCCCTGAAAGCAAGAATAATGGAACTGAAACTAAAAAATTATTTCCGATGAATCCCACTACAGGAGTCATTGTGCAAATTCTTGTTTTAACCTTGGGTCTCATCCTCTTCTCATGTGTTGCGCTTGCAATATCTGGATTTTACATTTTCAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

349

Amino Acids

38.21

Weight (kDa)

4.82

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	1 - 34	2.5e-07	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004215)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23400
prunus_persica	Prupe.6G165300_v2.0.a1 Prupe.6G165500_v2.0.a1 Prupe.6G165500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118691 RchiOBHm_Chr2g0118751 RchiOBHm_Chr2g0118771
rosa_laevigata	RLG00000018420
rosa_multiflora	Rmu_co8322425.1_g000001 Rmu_sc0001814.1_g000023 Rmu_sc0001814.1_g000024 Rmu_sc0001814.1_g000031 Rmu_sc0002831.1_g000032 Rmu_sc0003564.1_g000001 Rmu_sc0004345.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124740 Rroxscaffold_2G00124750 Rroxscaffold_2G00124840 Rroxscaffold_2G00124870 Rroxscaffold_2G00124880 Rroxscaffold_2G00125530
rosa_rugosa	Rorug02G0218500
rosa_samantha	Rh2AG274800 Rh2AG275100 Rh2AG275400 Rh2BG286900 Rh2BG287300 Rh2DG282600 Rh2DG301600 Rh2DG301800
rosa_wichuraiana	Rw2G021860 Rw2G021880 Rw2G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	279, 645, 774
AclWI	GGATC	5 cut(s)	266, 425, 438, 479, 577
AcoI	YGGCCR	2 cut(s)	142, 541
AcsI	RAATTY	2 cut(s)	969, 1044
AfaI	GTAC	2 cut(s)	200, 473
AfiI	CCNNNNNNNGG	3 cut(s)	110, 440, 953
AgsI	TTSAA	5 cut(s)	64, 265, 719, 871, 1042
AhdI	GACNNNNNGTC	1 cut(s)	111
AjnI	CCWGG	2 cut(s)	565, 695
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	4 cut(s)	306, 522, 641, 782
AluI	AGCT	4 cut(s)	306, 522, 641, 782
Alw26I	GTCTC	2 cut(s)	127, 995
AlwI	GGATC	5 cut(s)	266, 425, 438, 479, 577
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	4 cut(s)	142, 511, 541, 693
ApeKI	GCWGC	2 cut(s)	638, 779
ApoI	RAATTY	2 cut(s)	969, 1044
Asp700I	GAANNNNTTC	1 cut(s)	619
AspA2I	CCTAGG	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	1015
AsuHPI	GGTGA	2 cut(s)	670, 886
AvrII	CCTAGG	1 cut(s)	85
AxyI	CCTNAGG	1 cut(s)	435
BalI	TGGCCA	2 cut(s)	144, 543
BamHI	GGATCC	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	650, 791
BccI	CCATC	5 cut(s)	269, 329, 421, 533, 785
BceAI	ACGGC	1 cut(s)	876
BciT130I	CCWGG	2 cut(s)	567, 697
BcoDI	GTCTC	2 cut(s)	127, 995
BfaI	CTAG	3 cut(s)	86, 359, 758
BfmI	CTRYAG	2 cut(s)	243, 951
BisI	GCNGC	2 cut(s)	639, 780
BlnI	CCTAGG	1 cut(s)	85
BlsI	GCNGC	2 cut(s)	640, 781
Bme1390I	CCNGG	2 cut(s)	567, 697
BmeRI	GACNNNNNGTC	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	2 cut(s)	567, 697
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	3 cut(s)	127, 220, 464
BmuI	ACTGGG	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	631
BsaI	GGTCTC	1 cut(s)	995
BsaJI	CCNNGG	5 cut(s)	85, 681, 732, 858, 984
BsaXI	ACNNNNNCTCC	4 cut(s)	691, 721, 948, 978
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 440, 953
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	2 cut(s)	112, 126
Bse21I	CCTNAGG	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	567, 697
BseDI	CCNNGG	5 cut(s)	85, 681, 732, 858, 984
BseGI	GGATG	4 cut(s)	67, 340, 417, 993
BseLI	CCNNNNNNNGG	3 cut(s)	110, 440, 953
BseMII	CTCAG	1 cut(s)	838
BseNI	ACTGG	2 cut(s)	112, 126
BseXI	GCAGC	2 cut(s)	650, 791
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	4 cut(s)	144, 513, 543, 695
BsiSI	CCGG	1 cut(s)	629
BslFI	GGGAC	1 cut(s)	808
BslI	CCNNNNNNNGG	3 cut(s)	110, 440, 953
BsmAI	GTCTC	2 cut(s)	127, 995
BsmFI	GGGAC	1 cut(s)	808
BsmI	GAATGC	1 cut(s)	746
BsnI	GGCC	4 cut(s)	144, 513, 543, 695
Bso31I	GGTCTC	1 cut(s)	995
Bsp143I	GATC	6 cut(s)	48, 258, 349, 430, 484, 569
Bsp19I	CCATGG	2 cut(s)	681, 732
BspACI	CCGC	3 cut(s)	279, 645, 774
BspANI	GGCC	4 cut(s)	144, 513, 543, 695
BspCNI	CTCAG	1 cut(s)	837
BspLI	GGNNCC	1 cut(s)	432
BspPI	GGATC	5 cut(s)	266, 425, 438, 479, 577
BspTNI	GGTCTC	1 cut(s)	995
BsrFI	RCCGGY	1 cut(s)	628
BsrI	ACTGG	2 cut(s)	112, 126
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	5 cut(s)	85, 681, 732, 858, 984
BssMI	GATC	6 cut(s)	48, 258, 349, 430, 484, 569
BssT1I	CCWWGG	4 cut(s)	85, 681, 732, 984
Bst2UI	CCWGG	2 cut(s)	567, 697
Bst4CI	ACNGT	4 cut(s)	320, 373, 388, 554
Bst6I	CTCTTC	1 cut(s)	1004
BstC8I	GCNNGC	4 cut(s)	142, 442, 643, 1017
BstDEI	CTNAG	2 cut(s)	435, 824
BstDSI	CCRYGG	3 cut(s)	681, 732, 858
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstF5I	GGATG	4 cut(s)	67, 340, 417, 993
BstHHI	GCGC	1 cut(s)	1015
BstKTI	GATC	6 cut(s)	51, 261, 352, 433, 487, 572
BstMAI	GTCTC	2 cut(s)	127, 995
BstMBI	GATC	6 cut(s)	48, 258, 349, 430, 484, 569
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 510, 519, 638, 900
BstNI	CCWGG	2 cut(s)	567, 697
BstNSI	RCATGY	3 cut(s)	175, 636, 883
BstSCI	CCNGG	2 cut(s)	565, 695
BstSFI	CTRYAG	2 cut(s)	243, 951
BstV1I	GCAGC	2 cut(s)	650, 791
BstX2I	RGATCY	2 cut(s)	258, 430
BstYI	RGATCY	2 cut(s)	258, 430
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	4 cut(s)	144, 513, 543, 695
BtgI	CCRYGG	3 cut(s)	681, 732, 858
BtsCI	GGATG	4 cut(s)	67, 340, 417, 993
BtsIMutI	CAGTG	2 cut(s)	325, 369
Cac8I	GCNNGC	4 cut(s)	142, 442, 643, 1017
CaiI	CAGNNNCTG	1 cut(s)	100
CfoI	GCGC	1 cut(s)	1015
Cfr10I	RCCGGY	1 cut(s)	628
Csp6I	GTAC	2 cut(s)	199, 472
CviAII	CATG	6 cut(s)	172, 633, 682, 733, 880, 1005
CviQI	GTAC	2 cut(s)	199, 472
DdeI	CTNAG	2 cut(s)	435, 824
DpnI	GATC	6 cut(s)	50, 260, 351, 432, 486, 571
DpnII	GATC	6 cut(s)	48, 258, 349, 430, 484, 569
DriI	GACNNNNNGTC	1 cut(s)	111
EaeI	YGGCCR	2 cut(s)	142, 541
Eam1104I	CTCTTC	1 cut(s)	1004
Eam1105I	GACNNNNNGTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	1004
Eco130I	CCWWGG	4 cut(s)	85, 681, 732, 984
Eco31I	GGTCTC	1 cut(s)	995
Eco81I	CCTNAGG	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	565, 695
EcoT14I	CCWWGG	4 cut(s)	85, 681, 732, 984
ErhI	CCWWGG	4 cut(s)	85, 681, 732, 984
FaeI	CATG	6 cut(s)	175, 636, 685, 736, 883, 1008
FaqI	GGGAC	1 cut(s)	808
FatI	CATG	6 cut(s)	171, 632, 681, 732, 879, 1004
FauI	CCCGC	1 cut(s)	638
Fnu4HI	GCNGC	2 cut(s)	639, 780
FokI	GGATG	4 cut(s)	54, 347, 424, 980
Fsp4HI	GCNGC	2 cut(s)	639, 780
FspBI	CTAG	3 cut(s)	86, 359, 758
GlaI	GCGC	1 cut(s)	1014
GluI	GCNGC	2 cut(s)	639, 780
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	109
HaeIII	GGCC	4 cut(s)	144, 513, 543, 695
HapII	CCGG	1 cut(s)	629
HhaI	GCGC	1 cut(s)	1015
Hin1II	CATG	6 cut(s)	175, 636, 685, 736, 883, 1008
Hin6I	GCGC	1 cut(s)	1013
HinP1I	GCGC	1 cut(s)	1013
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HinfI	GANTC	4 cut(s)	8, 97, 943, 957
HpaI	GTTAAC	1 cut(s)	885
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	2 cut(s)	670, 886
Hpy166II	GTNNAC	3 cut(s)	28, 316, 885
Hpy188I	TCNGA	8 cut(s)	96, 136, 214, 426, 574, 625, 827, 939
Hpy188III	TCNNGA	5 cut(s)	12, 262, 710, 758, 1026
Hpy8I	GTNNAC	3 cut(s)	28, 316, 885
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	4 cut(s)	320, 373, 388, 554
HpyCH4V	TGCA	8 cut(s)	175, 528, 638, 744, 768, 847, 967, 1019
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 510, 519, 638, 900
HpyF3I	CTNAG	2 cut(s)	435, 824
Hsp92II	CATG	6 cut(s)	175, 636, 685, 736, 883, 1008
HspAI	GCGC	1 cut(s)	1013
KspAI	GTTAAC	1 cut(s)	885
Kzo9I	GATC	6 cut(s)	48, 258, 349, 430, 484, 569
LmnI	GCTCC	1 cut(s)	776
Lsp1109I	GCAGC	2 cut(s)	650, 791
LweI	GCATC	3 cut(s)	127, 220, 464
MaeI	CTAG	3 cut(s)	86, 359, 758
MalI	GATC	6 cut(s)	50, 260, 351, 432, 486, 571
MboI	GATC	6 cut(s)	48, 258, 349, 430, 484, 569
MboII	GAAGA	3 cut(s)	749, 849, 991
MflI	RGATCY	2 cut(s)	258, 430
MlsI	TGGCCA	2 cut(s)	144, 543
MluCI	AATT	6 cut(s)	116, 354, 799, 929, 969, 1044
MluNI	TGGCCA	2 cut(s)	144, 543
MlyI	GAGTC	2 cut(s)	91, 966
MnlI	CCTC	4 cut(s)	596, 741, 754, 1007
Mox20I	TGGCCA	2 cut(s)	144, 543
MroXI	GAANNNNTTC	1 cut(s)	619
MscI	TGGCCA	2 cut(s)	144, 543
MseI	TTAA	5 cut(s)	407, 498, 516, 884, 980
Msp20I	TGGCCA	2 cut(s)	144, 543
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	567, 697
Mva1269I	GAATGC	1 cut(s)	746
MvaI	CCWGG	2 cut(s)	567, 697
MwoI	GCNNNNNNNGC	5 cut(s)	239, 510, 519, 638, 900
NcoI	CCATGG	2 cut(s)	681, 732
NdeII	GATC	6 cut(s)	48, 258, 349, 430, 484, 569
NlaIII	CATG	6 cut(s)	175, 636, 685, 736, 883, 1008
NlaIV	GGNNCC	1 cut(s)	432
NspI	RCATGY	3 cut(s)	175, 636, 883
PctI	GAATGC	1 cut(s)	746
PdmI	GAANNNNTTC	1 cut(s)	619
PfeI	GAWTC	2 cut(s)	8, 943
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	640, 781
PleI	GAGTC	2 cut(s)	91, 965
PpsI	GAGTC	2 cut(s)	91, 965
Psp6I	CCWGG	2 cut(s)	565, 695
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	2 cut(s)	565, 695
PspN4I	GGNNCC	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	258, 430
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	2 cut(s)	200, 473
RsaNI	GTAC	2 cut(s)	199, 472
SaqAI	TTAA	5 cut(s)	407, 498, 516, 884, 980
SatI	GCNGC	2 cut(s)	639, 780
Sau3AI	GATC	6 cut(s)	48, 258, 349, 430, 484, 569
SchI	GAGTC	2 cut(s)	91, 966
ScrFI	CCNGG	2 cut(s)	567, 697
SfaNI	GCATC	3 cut(s)	127, 220, 464
SfcI	CTRYAG	2 cut(s)	243, 951
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
Sse9I	AATT	6 cut(s)	116, 354, 799, 929, 969, 1044
SsiI	CCGC	3 cut(s)	279, 645, 774
SspMI	CTAG	3 cut(s)	86, 359, 758
StyD4I	CCNGG	2 cut(s)	565, 695
StyI	CCWWGG	4 cut(s)	85, 681, 732, 984
TaaI	ACNGT	4 cut(s)	320, 373, 388, 554
TaqI	TCGA	2 cut(s)	308, 789
TasI	AATT	6 cut(s)	116, 354, 799, 929, 969, 1044
TfiI	GAWTC	2 cut(s)	8, 943
Tru1I	TTAA	5 cut(s)	407, 498, 516, 884, 980
Tru9I	TTAA	5 cut(s)	407, 498, 516, 884, 980
TscAI	CASTG	2 cut(s)	325, 376
TseI	GCWGC	2 cut(s)	638, 779
TspDTI	ATGAA	4 cut(s)	57, 152, 821, 956
TspGWI	ACGGA	2 cut(s)	198, 414
TspRI	CASTG	2 cut(s)	325, 376
XagI	CCTNNNNNAGG	1 cut(s)	438
XapI	RAATTY	2 cut(s)	969, 1044
XbaI	TCTAGA	1 cut(s)	757
XceI	RCATGY	3 cut(s)	175, 636, 883
XcmI	CCANNNNNNNNNTGG	2 cut(s)	688, 730
XmaJI	CCTAGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	619
XspI	CTAG	3 cut(s)	86, 359, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.