Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004215

Physical Location & Seq

Genomic Coordinates Reverse (-)

59190225 .. 59191468

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCATAGGATTACGGCTTCCATGGCTTCCGTTGTCATTGCTATCGTTCTCTTCTCACTATATTCTCTATGTGAAGGAGCTCAACAAAACAACGATTCTCGCCACATAGGCCTGTTATCTTCACTCTTTCCAGAAACTCGCCCCAGCTCATGGCCTTCTGCCTCTGGCCAGTTCGAATTTGGCTTTTATCAGCAAGGAAGTGGTTTCGCGGTTGGAATTTGGTTGGTGGGAGTAGACCAAAACACAACTGTATGGACAGCAAACCGTGATGATCCCCCACTGCTGCCCTCACCAAATAATACAGTGAAGCTGCAGTTAGCCACTGATGGTAAGCTTGTTCTAACCAGTGACCAGAGTCATAAAAAAGTAGTCATCGCAAATGCAACGCACGGTTCTGTTTCCTCTGCCTCCATGCTTGATTCTGGAAACTTCGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

146

Amino Acids

15.67

Weight (kDa)

6.01

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	82 - 146	2.2e-08	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004215)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23400
prunus_persica	Prupe.6G165300_v2.0.a1 Prupe.6G165500_v2.0.a1 Prupe.6G165500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118691 RchiOBHm_Chr2g0118751 RchiOBHm_Chr2g0118771
rosa_laevigata	RLG00000018420
rosa_multiflora	Rmu_co8322425.1_g000001 Rmu_sc0001814.1_g000023 Rmu_sc0001814.1_g000024 Rmu_sc0001814.1_g000031 Rmu_sc0002831.1_g000032 Rmu_sc0003564.1_g000001 Rmu_sc0004345.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124740 Rroxscaffold_2G00124750 Rroxscaffold_2G00124840 Rroxscaffold_2G00124870 Rroxscaffold_2G00124880 Rroxscaffold_2G00125530
rosa_rugosa	Rorug02G0218500
rosa_samantha	Rh2AG274800 Rh2AG275100 Rh2AG275400 Rh2BG286900 Rh2BG287300 Rh2DG282600 Rh2DG301600 Rh2DG301800
rosa_wichuraiana	Rw2G021860 Rw2G021880 Rw2G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	209
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	266
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	2 cut(s)	176, 216
AfiI	CCNNNNNNNGG	1 cut(s)	150
AluBI	AGCT	4 cut(s)	80, 147, 310, 334
AluI	AGCT	4 cut(s)	80, 147, 310, 334
Alw21I	GWGCWC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	3 cut(s)	109, 152, 166
ApeKI	GCWGC	2 cut(s)	283, 310
ApoI	RAATTY	2 cut(s)	176, 216
AsuHPI	GGTGA	1 cut(s)	282
AsuII	TTCGAA	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	270, 297
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	311
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	2 cut(s)	284, 311
BlsI	GCNGC	2 cut(s)	285, 312
BoxI	GACNNNNGTC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	169, 345
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	169, 345
BseXI	GCAGC	2 cut(s)	270, 297
BseYI	CCCAGC	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	3 cut(s)	111, 154, 168
BsiHKAI	GWGCWC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	150
BsnI	GGCC	3 cut(s)	111, 154, 168
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	271
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	3 cut(s)	111, 154, 168
BspFNI	CGCG	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	315
BspPI	GGATC	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	169, 345
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	4 cut(s)	250, 266, 304, 392
Bst6I	CTCTTC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	174
BstDSI	CCRYGG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 108
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	311
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	270, 297
BsuRI	GGCC	3 cut(s)	111, 154, 168
BtgI	CCRYGG	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	4 cut(s)	278, 309, 321, 352
CviAII	CATG	3 cut(s)	22, 150, 412
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	3 cut(s)	25, 153, 415
FaiI	YATR	9 cut(s)	6, 23, 61, 70, 107, 151, 253, 360, 413
FatI	CATG	3 cut(s)	21, 149, 411
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	284, 311
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	2 cut(s)	284, 311
GluI	GCNGC	2 cut(s)	284, 311
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	111, 154, 168
Hin1II	CATG	3 cut(s)	25, 153, 415
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	3 cut(s)	95, 355, 419
HphI	GGTGA	1 cut(s)	282
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188III	TCNNGA	3 cut(s)	131, 423, 433
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	2 cut(s)	68, 165
HpyCH4III	ACNGT	4 cut(s)	250, 266, 304, 392
HpyCH4V	TGCA	3 cut(s)	4, 313, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 108
Hsp92II	CATG	3 cut(s)	25, 153, 415
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	8 cut(s)	125, 144, 150, 157, 182, 358, 365, 408
Lsp1109I	GCAGC	2 cut(s)	270, 297
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	2 cut(s)	43, 111
MhlI	GDGCHC	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	2 cut(s)	176, 216
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	4 cut(s)	172, 298, 412, 418
Mox20I	TGGCCA	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	168
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	23, 108
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	3 cut(s)	25, 153, 415
NmuCI	GTSAC	1 cut(s)	347
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	95, 419
PflMI	CCANNNNNTGG	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	285, 312
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
PshAI	GACNNNNGTC	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	82
SatI	GCNGC	2 cut(s)	284, 311
Sau3AI	GATC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	4 cut(s)	82, 149, 312, 336
SfcI	CTRYAG	1 cut(s)	311
SfuI	TTCGAA	1 cut(s)	174
Sse9I	AATT	2 cut(s)	176, 216
SseBI	AGGCCT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	82
StuI	AGGCCT	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	4 cut(s)	250, 266, 304, 392
TaqI	TCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	176, 216
TfiI	GAWTC	2 cut(s)	95, 419
TscAI	CASTG	4 cut(s)	285, 309, 328, 352
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	2 cut(s)	283, 310
Tsp45I	GTSAC	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	4 cut(s)	285, 309, 328, 352
Van91I	CCANNNNNTGG	1 cut(s)	150
XapI	RAATTY	2 cut(s)	176, 216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.