Rw2G021880

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
30526471 .. 30529684
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G021880.1

Sequence Viewer

Length: 1389 bp
ATGGCTTCCATTGCTTCCATTGGCATTGCTATCCTTCTCTTCTCACTATATTCTCTATGTGAAGGAGCTCAACAAAACAACGATTCTAGGCACATACGCCTGGGATCTTCACTCTCTCCAGAAACTCACCCCAGCTCATGGCCTTCTGCCTCTGGCCAGTTCGAATTCGGCTTTTATCAGCAAGGAAGTGGTTTCGCTGTTGGAATTTGGTTGGTGGGAGTAGACCAAAACACAACTGTATGGACAGCAAACCGTGATGATCCCCCACTGCTGCCCTCACAAAATAATACAGTGAAGCTGCAGTTAGCCACTGATGGCAAGCTTGTTCTAACCAGTGACCAAGGTCATAAAAAAGTAGTCATCGCAAATGCAACATACGGTTCTGTTTCCTCTGCCTCCATGCTTGATTCTGGAAACTTCGTTCTTTACGACGAAACCTATAAAGTGATCTGGGAGAGTTTCAATCATCCTACTGATACTATCCTGGGTAATCAGACTCTGCCGGCTGGGGGTCAATTAGTCTCCAGTTTGTCCGATGCTGACCGCTCAACAGGACATTTTCATCTCAACATGCAGGCTGACGGAAACCTTGTTCTGTACCCAGCAAACTCTGAAAACTCTCCGGTAGATGCCTACTATGCTTCAGGTACAAATGGACTCTTGAACCTTCACCTCTATCTTGACAGTACAGATGGCAGTCTTGCTCTAATCAACACCAACAGCTCGGAAGTTTACAGAGTCATCAGTAGCGGTAATGATGATCTAGCCAATAACACTGTATATCGGGCAACTGTTGGCATAAACGGAGTATTAAGGGCGTATTCTCATCAGATGGATCCTAAGACAGGCAAACTTCAAGCACCTGTTTTAATGTGGTACCAACCAAATAATCCTTGCGATGTTAAAGGCGTGTGTGGCCTTAACAGCTATTGCACACTCAATGATGACCAACCAGACTGTCTTTGCCTTCCAGGATCAGATTACGCTGACCTCAACCGCAGGACTATGGGTTGCTTGAGAAACAATCCAGAACCGGCGTGTGCAGCTGGCGGGAAAGAGAATACAACCTTTTATGACATACTCACCATGGAAAATTTGGTCTTGGTAGATCCTCCAGACTTTGAAGCCAGAATGACCATGGAAGAATGCAAGAGCTCTTGTCTAGAGGACTGCAATTGTGGAGCAGCTCTGTTCGAGCAGACAAATTGTATGAAACAGAAGCCACCACTCAGATATGTGAGAAGAGATATGCAGAAATCCAACACTGCTTTCTTCAAGCAATCAGTAAACTTTGCTTTTGCAGCTACTATGCTGTGTAGGACAGCAGCATTTCTATTGGTCTCTGTTCACAATATAGCATATTATCAAATTAAGAATAAAGTGTTGTAA

Protein Analysis

462

Amino Acids

50.46

Weight (kDa)

5.11

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 78 - 167 3.8e-17 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 876
AccB1I GGYRCC 1 cut(s) 876
AccB7I CCANNNNNTGG 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 546
AccI GTMKAC 1 cut(s) 222
AciI CCGC 4 cut(s) 544, 750, 997, 1050
AclWI GGATC 6 cut(s) 112, 254, 830, 843, 982, 1103
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 3 cut(s) 164, 204, 1093
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 4 cut(s) 599, 649, 688, 878
AfiI CCNNNNNNNGG 3 cut(s) 138, 509, 845
AgsI TTSAA 5 cut(s) 463, 664, 857, 1124, 1276
AjnI CCWGG 3 cut(s) 99, 483, 970
AjuI GAANNNNNNNTTGG 2 cut(s) 1253, 1285
AloI GAACNNNNNNTCC 4 cut(s) 405, 437, 576, 608
Alw21I GWGCWC 2 cut(s) 70, 1157
Alw26I GTCTC 2 cut(s) 526, 1345
AlwI GGATC 6 cut(s) 112, 254, 830, 843, 982, 1103
AlwNI CAGNNNCTG 1 cut(s) 499
AoxI GGCC 3 cut(s) 140, 154, 916
ApeKI GCWGC 6 cut(s) 271, 298, 1043, 1184, 1301, 1325
ApoI RAATTY 3 cut(s) 164, 204, 1093
Asp718I GGTACC 1 cut(s) 876
AsuHPI GGTGA 3 cut(s) 119, 662, 1075
AsuII TTCGAA 1 cut(s) 162
BalI TGGCCA 1 cut(s) 156
BamHI GGATCC 1 cut(s) 835
BanI GGYRCC 1 cut(s) 876
BanII GRGCYC 2 cut(s) 70, 1157
Bbv12I GWGCWC 2 cut(s) 70, 1157
BbvI GCAGC 6 cut(s) 258, 285, 1055, 1196, 1313, 1337
BccI CCATC 3 cut(s) 308, 686, 826
BciT130I CCWGG 3 cut(s) 101, 485, 972
BcoDI GTCTC 2 cut(s) 526, 1345
BfaI CTAG 3 cut(s) 87, 764, 1163
BfmI CTRYAG 1 cut(s) 299
BisI GCNGC 6 cut(s) 272, 299, 1044, 1185, 1302, 1326
BlsI GCNGC 6 cut(s) 273, 300, 1045, 1186, 1303, 1327
Bme1390I CCNGG 3 cut(s) 101, 485, 972
BmiI GGNNCC 2 cut(s) 837, 878
BmrFI CCNGG 3 cut(s) 101, 485, 972
BmsI GCATC 2 cut(s) 526, 619
BoxI GACNNNNGTC 1 cut(s) 342
BpmI CTGGAG 3 cut(s) 102, 508, 1098
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 1036
BsaI GGTCTC 1 cut(s) 1345
BsaJI CCNNGG 5 cut(s) 100, 340, 484, 1086, 1137
BsaWI WCCGGW 1 cut(s) 622
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 509, 845
Bse118I RCCGGY 2 cut(s) 502, 1033
Bse1I ACTGG 3 cut(s) 157, 333, 525
Bse3DI GCAATG 2 cut(s) 9, 24
BseBI CCWGG 3 cut(s) 101, 485, 972
BseDI CCNNGG 5 cut(s) 100, 340, 484, 1086, 1137
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 3 cut(s) 138, 509, 845
BseMI GCAATG 2 cut(s) 9, 24
BseMII CTCAG 1 cut(s) 1243
BseNI ACTGG 3 cut(s) 157, 333, 525
BseXI GCAGC 6 cut(s) 258, 285, 1055, 1196, 1313, 1337
BseYI CCCAGC 3 cut(s) 131, 506, 601
BsgI GTGCAG 1 cut(s) 1062
BshFI GGCC 3 cut(s) 142, 156, 918
BshNI GGYRCC 1 cut(s) 876
BsiHKAI GWGCWC 2 cut(s) 70, 1157
BsiSI CCGG 3 cut(s) 503, 623, 1034
BslI CCNNNNNNNGG 3 cut(s) 138, 509, 845
BsmAI GTCTC 2 cut(s) 526, 1345
BsmI GAATGC 1 cut(s) 1151
BsnI GGCC 3 cut(s) 142, 156, 918
Bso31I GGTCTC 1 cut(s) 1345
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 70, 1157
Bsp143I GATC 7 cut(s) 104, 259, 447, 760, 835, 974, 1108
Bsp19I CCATGG 2 cut(s) 1086, 1137
BspACI CCGC 4 cut(s) 544, 750, 997, 1050
BspANI GGCC 3 cut(s) 142, 156, 918
BspCNI CTCAG 1 cut(s) 1242
BspLI GGNNCC 2 cut(s) 837, 878
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 6 cut(s) 112, 254, 830, 843, 982, 1103
BspT104I TTCGAA 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 876
BspTNI GGTCTC 1 cut(s) 1345
BsrBI CCGCTC 1 cut(s) 546
BsrDI GCAATG 2 cut(s) 9, 24
BsrFI RCCGGY 2 cut(s) 502, 1033
BsrI ACTGG 3 cut(s) 157, 333, 525
BssAI RCCGGY 2 cut(s) 502, 1033
BssECI CCNNGG 5 cut(s) 100, 340, 484, 1086, 1137
BssMI GATC 7 cut(s) 104, 259, 447, 760, 835, 974, 1108
BssT1I CCWWGG 3 cut(s) 340, 1086, 1137
Bst2UI CCWGG 3 cut(s) 101, 485, 972
Bst4CI ACNGT 8 cut(s) 238, 254, 292, 380, 686, 778, 793, 959
Bst6I CTCTTC 2 cut(s) 44, 1237
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 4 cut(s) 320, 504, 576, 1048
BstDEI CTNAG 2 cut(s) 840, 1229
BstDSI CCRYGG 2 cut(s) 1086, 1137
BstENI CCTNNNNNAGG 1 cut(s) 843
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 7 cut(s) 107, 262, 450, 763, 838, 977, 1111
BstMAI GTCTC 2 cut(s) 526, 1345
BstMBI GATC 7 cut(s) 104, 259, 447, 760, 835, 974, 1108
BstMWI GCNNNNNNNGC 6 cut(s) 11, 638, 915, 924, 1043, 1301
BstNI CCWGG 3 cut(s) 101, 485, 972
BstNSI RCATGY 1 cut(s) 574
BstPAI GACNNNNGTC 1 cut(s) 342
BstSCI CCNGG 3 cut(s) 99, 483, 970
BstSFI CTRYAG 1 cut(s) 299
BstV1I GCAGC 6 cut(s) 258, 285, 1055, 1196, 1313, 1337
BstX2I RGATCY 3 cut(s) 104, 835, 1108
BstYI RGATCY 3 cut(s) 104, 835, 1108
BsuRI GGCC 3 cut(s) 142, 156, 918
BtgI CCRYGG 2 cut(s) 1086, 1137
BtgZI GCGATG 2 cut(s) 346, 912
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 2 cut(s) 266, 1263
BtsIMutI CAGTG 6 cut(s) 266, 297, 309, 340, 774, 1263
Cac8I GCNNGC 4 cut(s) 320, 504, 576, 1048
CaiI CAGNNNCTG 1 cut(s) 499
Cfr10I RCCGGY 2 cut(s) 502, 1033
Csp6I GTAC 4 cut(s) 598, 648, 687, 877
CviAII CATG 5 cut(s) 138, 400, 571, 1087, 1138
CviQI GTAC 4 cut(s) 598, 648, 687, 877
DdeI CTNAG 2 cut(s) 840, 1229
DpnI GATC 7 cut(s) 106, 261, 449, 762, 837, 976, 1110
DpnII GATC 7 cut(s) 104, 259, 447, 760, 835, 974, 1108
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 44, 1237
EarI CTCTTC 2 cut(s) 44, 1237
Ecl136II GAGCTC 2 cut(s) 68, 1155
Eco130I CCWWGG 3 cut(s) 340, 1086, 1137
Eco24I GRGCYC 2 cut(s) 70, 1157
Eco31I GGTCTC 1 cut(s) 1345
Eco53kI GAGCTC 2 cut(s) 68, 1155
Eco57I CTGAAG 1 cut(s) 627
EcoICRI GAGCTC 2 cut(s) 68, 1155
EcoNI CCTNNNNNAGG 1 cut(s) 843
EcoRI GAATTC 1 cut(s) 164
EcoRII CCWGG 3 cut(s) 99, 483, 970
EcoT14I CCWWGG 3 cut(s) 340, 1086, 1137
EcoT38I GRGCYC 2 cut(s) 70, 1157
ErhI CCWWGG 3 cut(s) 340, 1086, 1137
FaeI CATG 5 cut(s) 141, 403, 574, 1090, 1141
FatI CATG 5 cut(s) 137, 399, 570, 1086, 1137
FauI CCCGC 1 cut(s) 1043
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 6 cut(s) 272, 299, 1044, 1185, 1302, 1326
FokI GGATG 1 cut(s) 453
FriOI GRGCYC 2 cut(s) 70, 1157
Fsp4HI GCNGC 6 cut(s) 272, 299, 1044, 1185, 1302, 1326
FspBI CTAG 3 cut(s) 87, 764, 1163
GluI GCNGC 6 cut(s) 272, 299, 1044, 1185, 1302, 1326
GsaI CCCAGC 3 cut(s) 135, 510, 605
GsuI CTGGAG 3 cut(s) 102, 508, 1098
HaeIII GGCC 3 cut(s) 142, 156, 918
HapII CCGG 3 cut(s) 503, 623, 1034
Hin1II CATG 5 cut(s) 141, 403, 574, 1090, 1141
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 5 cut(s) 83, 407, 496, 657, 738
HpaII CCGG 3 cut(s) 503, 623, 1034
HphI GGTGA 3 cut(s) 119, 662, 1075
Hpy166II GTNNAC 4 cut(s) 223, 733, 1288, 1348
Hpy188I TCNGA 7 cut(s) 495, 535, 613, 727, 831, 979, 1232
Hpy188III TCNNGA 7 cut(s) 119, 411, 661, 680, 1028, 1115, 1163
Hpy8I GTNNAC 4 cut(s) 223, 733, 1288, 1348
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 5 cut(s) 44, 56, 153, 677, 977
HpyCH4III ACNGT 8 cut(s) 238, 254, 292, 380, 686, 778, 793, 959
HpyCH4V TGCA 9 cut(s) 301, 371, 574, 933, 1043, 1149, 1173, 1252, 1301
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 638, 915, 924, 1043, 1301
HpyF3I CTNAG 2 cut(s) 840, 1229
Hsp92II CATG 5 cut(s) 141, 403, 574, 1090, 1141
KpnI GGTACC 1 cut(s) 880
KroI GCCGGC 1 cut(s) 502
KroNI GCCGGC 1 cut(s) 504
Kzo9I GATC 7 cut(s) 104, 259, 447, 760, 835, 974, 1108
LmnI GCTCC 2 cut(s) 65, 1181
Lsp1109I GCAGC 6 cut(s) 258, 285, 1055, 1196, 1313, 1337
LweI GCATC 2 cut(s) 526, 619
MaeI CTAG 3 cut(s) 87, 764, 1163
MaeIII GTNAC 1 cut(s) 335
MalI GATC 7 cut(s) 106, 261, 449, 762, 837, 976, 1110
MbiI CCGCTC 1 cut(s) 546
MboI GATC 7 cut(s) 104, 259, 447, 760, 835, 974, 1108
MboII GAAGA 5 cut(s) 31, 99, 1154, 1254, 1264
MfeI CAATTG 1 cut(s) 1174
MflI RGATCY 3 cut(s) 104, 835, 1108
MhlI GDGCHC 2 cut(s) 70, 1157
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 7 cut(s) 164, 204, 515, 1093, 1174, 1204, 1368
MluNI TGGCCA 1 cut(s) 156
MlyI GAGTC 3 cut(s) 490, 651, 747
MmeI TCCRAC 2 cut(s) 181, 1284
MnlI CCTC 8 cut(s) 160, 286, 400, 406, 683, 1001, 1122, 1159
Mox20I TGGCCA 1 cut(s) 156
MroNI GCCGGC 1 cut(s) 502
MscI TGGCCA 1 cut(s) 156
MseI TTAA 5 cut(s) 812, 869, 903, 921, 1371
Msp20I TGGCCA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 1046
MspI CCGG 3 cut(s) 503, 623, 1034
MspR9I CCNGG 3 cut(s) 101, 485, 972
MunI CAATTG 1 cut(s) 1174
Mva1269I GAATGC 1 cut(s) 1151
MvaI CCWGG 3 cut(s) 101, 485, 972
MwoI GCNNNNNNNGC 6 cut(s) 11, 638, 915, 924, 1043, 1301
NaeI GCCGGC 1 cut(s) 504
NcoI CCATGG 2 cut(s) 1086, 1137
NdeII GATC 7 cut(s) 104, 259, 447, 760, 835, 974, 1108
NgoMIV GCCGGC 1 cut(s) 502
NlaIII CATG 5 cut(s) 141, 403, 574, 1090, 1141
NlaIV GGNNCC 2 cut(s) 837, 878
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 1 cut(s) 574
NspV TTCGAA 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PctI GAATGC 1 cut(s) 1151
PdiI GCCGGC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 83, 407
PflMI CCANNNNNTGG 1 cut(s) 138
PfoI TCCNGGA 1 cut(s) 970
PkrI GCNGC 6 cut(s) 273, 300, 1045, 1186, 1303, 1327
PleI GAGTC 3 cut(s) 490, 651, 746
PpsI GAGTC 3 cut(s) 490, 651, 746
PshAI GACNNNNGTC 1 cut(s) 342
Psp124BI GAGCTC 2 cut(s) 70, 1157
Psp6I CCWGG 3 cut(s) 99, 483, 970
PspFI CCCAGC 3 cut(s) 131, 506, 601
PspGI CCWGG 3 cut(s) 99, 483, 970
PspN4I GGNNCC 2 cut(s) 837, 878
PstI CTGCAG 1 cut(s) 303
PstNI CAGNNNCTG 1 cut(s) 499
PsuI RGATCY 3 cut(s) 104, 835, 1108
PvuII CAGCTG 1 cut(s) 1046
RsaI GTAC 4 cut(s) 599, 649, 688, 878
RsaNI GTAC 4 cut(s) 598, 648, 687, 877
SacI GAGCTC 2 cut(s) 70, 1157
SaqAI TTAA 5 cut(s) 812, 869, 903, 921, 1371
SatI GCNGC 6 cut(s) 272, 299, 1044, 1185, 1302, 1326
Sau3AI GATC 7 cut(s) 104, 259, 447, 760, 835, 974, 1108
SchI GAGTC 3 cut(s) 490, 651, 747
ScrFI CCNGG 3 cut(s) 101, 485, 972
SduI GDGCHC 2 cut(s) 70, 1157
SfaNI GCATC 2 cut(s) 526, 619
SfcI CTRYAG 1 cut(s) 299
SfuI TTCGAA 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 1015
SmoI CTYRAG 1 cut(s) 1015
Sse9I AATT 7 cut(s) 164, 204, 515, 1093, 1174, 1204, 1368
SsiI CCGC 4 cut(s) 544, 750, 997, 1050
SspMI CTAG 3 cut(s) 87, 764, 1163
SstI GAGCTC 2 cut(s) 70, 1157
StyD4I CCNGG 3 cut(s) 99, 483, 970
StyI CCWWGG 3 cut(s) 340, 1086, 1137
TaaI ACNGT 8 cut(s) 238, 254, 292, 380, 686, 778, 793, 959
TaqI TCGA 2 cut(s) 162, 1194
TasI AATT 7 cut(s) 164, 204, 515, 1093, 1174, 1204, 1368
TatI WGTACW 1 cut(s) 686
TfiI GAWTC 2 cut(s) 83, 407
Tru1I TTAA 5 cut(s) 812, 869, 903, 921, 1371
Tru9I TTAA 5 cut(s) 812, 869, 903, 921, 1371
TscAI CASTG 6 cut(s) 273, 297, 316, 340, 781, 1270
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 6 cut(s) 271, 298, 1043, 1184, 1301, 1325
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 551, 1226
TspGWI ACGGA 2 cut(s) 597, 819
TspRI CASTG 6 cut(s) 273, 297, 316, 340, 781, 1270
Van91I CCANNNNNTGG 1 cut(s) 138
XagI CCTNNNNNAGG 1 cut(s) 843
XapI RAATTY 3 cut(s) 164, 204, 1093
XbaI TCTAGA 1 cut(s) 1162
XceI RCATGY 1 cut(s) 574
XcmI CCANNNNNNNNNTGG 2 cut(s) 1093, 1135
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 3 cut(s) 87, 764, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.