RLG00000020990

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003208
Physical Location & Seq
Reverse (-)
70869671 .. 70871316
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020990

Sequence Viewer

Length: 510 bp
ATGGTGGTTGTGTGCTCTCTCGCATCCAATTCCCTTCAACTTTCCCTAACCAGAGAAGCAGAACCAGTAATCATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAGGCTGATGACGAAAAGCGTGAGCTTGTCTTCAAGGAAGATGGACAGGAGTATGCCCAAGTGCTTCGGATGCTGGGTAATGGTCGGTGCGAAGCCATGTGCATTGATGGAACCAAGCGACTTTGCCATATCCGTGGTAAGATGCACAAGAAGGTTTGGATTGCAGCTGGGGATATCATTCTTGTTGGGCTTCGTGACTATCAGGATGACAAGGCCGATGTGATTCTCAAGTACATGCCTGACGAGGCTAGGCTGCTGAAGGCTTATGGAGAGCTTCCAGAGAATACACGTCTTAACGAGGGTATTACTGGGGGTCTTGATGAGGAGGAGGAAGGTGGTGCTGATGACTACATCGAGTTTGAAGATGAAGATATTGATAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
eIF-1a

Protein Analysis

170

Amino Acids

19.0

Weight (kDa)

4.97

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-1a PF01176 56 - 117 4.3e-24 Translation initiation factor 1A / IF-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 1 cut(s) 356
AflIII ACRYGT 1 cut(s) 410
AgsI TTSAA 3 cut(s) 38, 157, 485
AjiI CACGTC 1 cut(s) 413
AluBI AGCT 3 cut(s) 148, 290, 397
AluI AGCT 3 cut(s) 148, 290, 397
Alw21I GWGCWC 1 cut(s) 17
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 2 cut(s) 287, 376
BbsI GAAGAC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 299, 363
BccI CCATC 2 cut(s) 158, 224
BfaI CTAG 1 cut(s) 372
BisI GCNGC 2 cut(s) 288, 377
BlsI GCNGC 2 cut(s) 289, 378
BmgBI CACGTC 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 235
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 3 cut(s) 32, 183, 255
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 256
Bse1I ACTGG 2 cut(s) 65, 436
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 3 cut(s) 23, 198, 334
BseNI ACTGG 2 cut(s) 65, 436
BseRI GAGGAG 2 cut(s) 461, 464
BseXI GCAGC 2 cut(s) 299, 363
BseYI CCCAGC 2 cut(s) 196, 290
BshFI GGCC 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 17
BsnI GGCC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 17
BspANI GGCC 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 235
BsrI ACTGG 2 cut(s) 65, 436
BssECI CCNNGG 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 104
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 3 cut(s) 23, 198, 334
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 361
BstV1I GCAGC 2 cut(s) 299, 363
BstV2I GAAGAC 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 257
BsuRI GGCC 1 cut(s) 338
BtgI CCRYGG 1 cut(s) 256
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 3 cut(s) 23, 198, 334
Csp6I GTAC 1 cut(s) 355
CviAII CATG 3 cut(s) 73, 220, 358
CviQI GTAC 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco32I GATATC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 401
EcoRV GATATC 1 cut(s) 298
FaeI CATG 3 cut(s) 76, 223, 361
FaiI YATR 6 cut(s) 74, 177, 221, 252, 359, 390
FatI CATG 3 cut(s) 72, 219, 357
Fnu4HI GCNGC 2 cut(s) 288, 377
FokI GGATG 3 cut(s) 10, 205, 341
Fsp4HI GCNGC 2 cut(s) 288, 377
FspBI CTAG 1 cut(s) 372
GluI GCNGC 2 cut(s) 288, 377
GsaI CCCAGC 2 cut(s) 200, 294
HaeIII GGCC 1 cut(s) 338
Hin1II CATG 3 cut(s) 76, 223, 361
HinfI GANTC 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 4 cut(s) 317, 326, 401, 440
HpyAV CCTTC 4 cut(s) 44, 268, 376, 449
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 3 cut(s) 225, 268, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 3 cut(s) 76, 223, 361
Lsp1109I GCAGC 2 cut(s) 299, 363
LweI GCATC 3 cut(s) 32, 183, 255
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 317
MboII GAAGA 6 cut(s) 91, 121, 145, 173, 497, 503
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 1 cut(s) 28
MnlI CCTC 8 cut(s) 89, 107, 118, 361, 415, 439, 442, 445
MseI TTAA 2 cut(s) 417, 508
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 193
NlaIII CATG 3 cut(s) 76, 223, 361
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 317
NspI RCATGY 1 cut(s) 361
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 2 cut(s) 289, 378
PspFI CCCAGC 2 cut(s) 196, 290
PspN4I GGNNCC 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 2 cut(s) 417, 508
SatI GCNGC 2 cut(s) 288, 377
SduI GDGCHC 1 cut(s) 17
SetI ASST 6 cut(s) 150, 279, 292, 399, 415, 460
SfaNI GCATC 3 cut(s) 32, 183, 255
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 372
TaiI ACGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 477
TasI AATT 1 cut(s) 28
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 417, 508
Tru9I TTAA 2 cut(s) 417, 508
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 2 cut(s) 287, 376
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 504
TspGWI ACGGA 1 cut(s) 245
XceI RCATGY 1 cut(s) 361
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.