Rh4BG040700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003208
Physical Location & Seq
Forward (+)
7291920 .. 7292432
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG040700.1

Sequence Viewer

Length: 387 bp
ATGCACAAATCCCTTGGGAAAAAACCTCGTCAATGGCAGATCCTCCATGGTCCGAAACAGCTCCGGCCCATCCCTCTCGGTCCACAAGTCAAACCCTCCCGATCTCCGGAACGGATATGCCAAGACCTTAACCTGCTCATCAGCGCTGACGGAGAACAAATTGGGAGGCTCCTCGACGGTCTCCCAGGGGCGCTCGAGCTCGTACACGGAGGCTTTGAGCTCGGCCCGCTTTCGCATCTCGTAGATTTGGCGCTCGCTGCAGAGGCCGGCCTTGAGGAGTTGCTTGGCTTTCTTGGCCTACATGCGCTTCCACTACCACTTGGATACGCCTTTGGGGAAGGTTCTGGGCACGTCGCCCATTCGGATGAATGTGGGCTTTGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.64

Weight (kDa)

5.93

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 141
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 1 cut(s) 227
AclWI GGATC 1 cut(s) 34
AfaI GTAC 1 cut(s) 204
AfeI AGCGCT 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 106
AjiI CACGTC 1 cut(s) 352
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 3 cut(s) 61, 199, 220
AluI AGCT 3 cut(s) 61, 199, 220
Alw21I GWGCWC 2 cut(s) 201, 222
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 194
Aor13HI TCCGGA 1 cut(s) 106
Aor51HI AGCGCT 1 cut(s) 145
AoxI GGCC 5 cut(s) 65, 223, 264, 268, 295
ApeKI GCWGC 1 cut(s) 257
AspLEI GCGC 4 cut(s) 146, 193, 253, 307
AspS9I GGNCC 4 cut(s) 50, 66, 80, 224
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 2 cut(s) 50, 80
BaeGI GKGCMC 1 cut(s) 351
BanII GRGCYC 2 cut(s) 201, 222
Bbv12I GWGCWC 2 cut(s) 201, 222
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 186
BciVI GTATCC 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 258
BfoI RGCGCY 3 cut(s) 147, 194, 254
BfuAI ACCTGC 1 cut(s) 141
BfuI GTATCC 1 cut(s) 317
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 2 cut(s) 50, 80
BmeT110I CYCGRG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 352
BmgT120I GGNCC 4 cut(s) 50, 66, 80, 224
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 4 cut(s) 13, 46, 184, 185
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 266
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 4 cut(s) 13, 46, 184, 185
BseGI GGATG 2 cut(s) 69, 370
BseLI CCNNNNNNNGG 1 cut(s) 106
BseRI GAGGAG 2 cut(s) 161, 290
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 5 cut(s) 67, 225, 266, 270, 297
BsiHKAI GWGCWC 2 cut(s) 201, 222
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 3 cut(s) 64, 107, 267
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 185
BsnI GGCC 5 cut(s) 67, 225, 266, 270, 297
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 3 cut(s) 201, 222, 351
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 2 cut(s) 39, 101
Bsp19I CCATGG 1 cut(s) 46
BspACI CCGC 1 cut(s) 227
BspANI GGCC 5 cut(s) 67, 225, 266, 270, 297
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 170
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 4 cut(s) 13, 46, 184, 185
BssMI GATC 2 cut(s) 39, 101
BssT1I CCWWGG 2 cut(s) 13, 46
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 179
BstC8I GCNNGC 3 cut(s) 227, 255, 268
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 2 cut(s) 69, 370
BstH2I RGCGCY 3 cut(s) 147, 194, 254
BstHHI GCGC 4 cut(s) 146, 193, 253, 307
BstKTI GATC 2 cut(s) 42, 104
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 2 cut(s) 39, 101
BstMWI GCNNNNNNNGC 4 cut(s) 226, 257, 263, 294
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 5 cut(s) 67, 225, 266, 270, 297
BtgI CCRYGG 1 cut(s) 46
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 2 cut(s) 69, 370
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 3 cut(s) 227, 255, 268
CfoI GCGC 4 cut(s) 146, 193, 253, 307
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 4 cut(s) 50, 66, 80, 224
Csp6I GTAC 1 cut(s) 203
CviAII CATG 2 cut(s) 47, 302
CviQI GTAC 1 cut(s) 203
DpnI GATC 2 cut(s) 41, 103
DpnII GATC 2 cut(s) 39, 101
Ecl136II GAGCTC 2 cut(s) 199, 220
Eco130I CCWWGG 2 cut(s) 13, 46
Eco24I GRGCYC 2 cut(s) 201, 222
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 50, 80
Eco47III AGCGCT 1 cut(s) 145
Eco53kI GAGCTC 2 cut(s) 199, 220
Eco88I CYCGRG 1 cut(s) 194
EcoICRI GAGCTC 2 cut(s) 199, 220
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 2 cut(s) 13, 46
EcoT38I GRGCYC 2 cut(s) 201, 222
ErhI CCWWGG 2 cut(s) 13, 46
FaeI CATG 2 cut(s) 50, 305
FaiI YATR 3 cut(s) 48, 118, 303
FatI CATG 2 cut(s) 46, 301
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 2 cut(s) 56, 377
FriOI GRGCYC 2 cut(s) 201, 222
FseI GGCCGGCC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 258
GlaI GCGC 4 cut(s) 145, 192, 252, 306
GluI GCNGC 1 cut(s) 258
HaeII RGCGCY 3 cut(s) 147, 194, 254
HaeIII GGCC 5 cut(s) 67, 225, 266, 270, 297
HapII CCGG 3 cut(s) 64, 107, 267
HhaI GCGC 4 cut(s) 146, 193, 253, 307
Hin1II CATG 2 cut(s) 50, 305
Hin6I GCGC 4 cut(s) 144, 191, 251, 305
HinP1I GCGC 4 cut(s) 144, 191, 251, 305
HpaII CCGG 3 cut(s) 64, 107, 267
Hpy166II GTNNAC 2 cut(s) 83, 205
Hpy188I TCNGA 2 cut(s) 54, 364
Hpy188III TCNNGA 2 cut(s) 99, 107
Hpy8I GTNNAC 2 cut(s) 83, 205
Hpy99I CGWCG 2 cut(s) 179, 356
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 2 cut(s) 4, 260
HpyF10VI GCNNNNNNNGC 4 cut(s) 226, 257, 263, 294
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 2 cut(s) 50, 305
HspAI GCGC 4 cut(s) 144, 191, 251, 305
Kpn2I TCCGGA 1 cut(s) 106
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 39, 101
LmnI GCTCC 2 cut(s) 66, 174
LpnPI CCDG 7 cut(s) 77, 120, 146, 171, 198, 280, 330
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 244
MaeII ACGT 1 cut(s) 351
MalI GATC 2 cut(s) 41, 103
MboI GATC 2 cut(s) 39, 101
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 3 cut(s) 201, 222, 351
MluCI AATT 1 cut(s) 159
MnlI CCTC 9 cut(s) 36, 53, 84, 106, 159, 182, 203, 256, 268
MroI TCCGGA 1 cut(s) 106
MroNI GCCGGC 1 cut(s) 266
MseI TTAA 2 cut(s) 129, 385
MslI CAYNNNNRTG 1 cut(s) 363
MspI CCGG 3 cut(s) 64, 107, 267
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 4 cut(s) 226, 257, 263, 294
NaeI GCCGGC 1 cut(s) 268
NcoI CCATGG 1 cut(s) 46
NdeII GATC 2 cut(s) 39, 101
NgoMIV GCCGGC 1 cut(s) 266
NlaIII CATG 2 cut(s) 50, 305
NlaIV GGNNCC 1 cut(s) 170
NmeAIII GCCGAG 1 cut(s) 201
NspI RCATGY 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 194
PasI CCCWGGG 1 cut(s) 185
PdiI GCCGGC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 259
Psp124BI GAGCTC 2 cut(s) 201, 222
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 4 cut(s) 50, 66, 80, 224
PspXI VCTCGAGB 1 cut(s) 194
PstI CTGCAG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 39
RigI GGCCGGCC 1 cut(s) 270
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 363
SacI GAGCTC 2 cut(s) 201, 222
SaqAI TTAA 2 cut(s) 129, 385
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 39, 101
Sau96I GGNCC 4 cut(s) 50, 66, 80, 224
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 3 cut(s) 201, 222, 351
SetI ASST 8 cut(s) 28, 63, 129, 135, 201, 222, 343, 354
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 194
SinI GGWCC 2 cut(s) 50, 80
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 194, 272
SmoI CTYRAG 2 cut(s) 194, 272
Sse9I AATT 1 cut(s) 159
SsiI CCGC 1 cut(s) 227
SstI GAGCTC 2 cut(s) 201, 222
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 2 cut(s) 13, 46
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 1 cut(s) 354
TaqI TCGA 2 cut(s) 174, 195
TaqII GACCGA 1 cut(s) 68
TasI AATT 1 cut(s) 159
Tru1I TTAA 2 cut(s) 129, 385
Tru9I TTAA 2 cut(s) 129, 385
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 381
TspGWI ACGGA 3 cut(s) 127, 165, 222
VpaK11BI GGWCC 2 cut(s) 50, 80
XceI RCATGY 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.